mRNA_H-elongata_contig8459.16065.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig8459.16065.1
Unique NamemRNA_H-elongata_contig8459.16065.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig8459.16065.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig8459contigH-elongata_contig8459:2392..3109 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size244
Cds size243
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931250.5353894-CDS-H-elongata_contig8459:2392..24761622931250.5353894-CDS-H-elongata_contig8459:2392..2476Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig8459 2393..2476 -
1691679759.777858-CDS-H-elongata_contig8459:2392..24761691679759.777858-CDS-H-elongata_contig8459:2392..2476Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig8459 2393..2476 -
1622931250.5538468-CDS-H-elongata_contig8459:2950..31091622931250.5538468-CDS-H-elongata_contig8459:2950..3109Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig8459 2951..3109 -
1691679759.7872608-CDS-H-elongata_contig8459:2950..31091691679759.7872608-CDS-H-elongata_contig8459:2950..3109Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig8459 2951..3109 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig8459.16065.1prot_H-elongata_contig8459.16065.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig8459 2393..3109 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig8459.16065.1

>prot_H-elongata_contig8459.16065.1 ID=prot_H-elongata_contig8459.16065.1|Name=mRNA_H-elongata_contig8459.16065.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=81bp
EDLALESFGGIVFNGVPLDGCYTINPTYNVSGYYPYFAGPVEDGVAILFV
NEYNGTGEHLGLFWSLGVYESGVVDVVCLLD
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mRNA from alignment at H-elongata_contig8459:2392..3109-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig8459.16065.1 ID=mRNA_H-elongata_contig8459.16065.1|Name=mRNA_H-elongata_contig8459.16065.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=718bp|location=Sequence derived from alignment at H-elongata_contig8459:2392..3109- (Himanthalia elongata Himel1 dioecious)
GAGGACCTAGCGCTGGAGAGTTTTGGGGGCATCGTGTTTAACGGCGTGCC
TTTGGATGGATGCTACACGATCAACCCAACTTATAATGTTTCTGGATATT
ATCCGTACTTCGCTGGACCCGTGGAAGATGGAGTGGCGATCCTATTCGTC
AATGAGTATGCAAGTATCAATCCCTTGATCATTACCTTTGTTACATTCCA
AGTTTTACGTTGGGGGACCTCTTGAGTATATCAGTATTCACGGATTAACA
GTCCTCGGGGATTACTCGCTATTCGCAGCCAACCCAAGTTCCGCCATTCT
TTCTTTTTTTGACAGTTGTGTGATCACTCAGTTTTGTAACGAACGTTGCG
CCATCGCTGCTCCGAGACAGCGCACCCCGGAATTCAAGCTCTACTGTTGC
CTGATAGCACCAACTTGGCTTTTGATGCACAATATCGCCGGGGCTTTAAA
ACTAAGGAGGGGCTAGAGCTGTAAACGTTCGTCCCCTTGGAAAAAGAGCT
GGTGTATGAATCTCGAAAGCTAGGGAATTGGAACAATGTGTGTGCCACTT
TTCCAGGGGCCAACCTGGAATAAATAGCGTTAACCCTGCACGCATGTATC
CGGCTACCCATTGCTGCCGGTGTTTTCCACCAGAACGGTACGGGTGAACA
TTTGGGGCTGTTCTGGTCTTTGGGAGTCTACGAAAGCGGCGTCGTAGATG
TGGTGTGTTTGCTTGACC
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Coding sequence (CDS) from alignment at H-elongata_contig8459:2392..3109-

>mRNA_H-elongata_contig8459.16065.1 ID=mRNA_H-elongata_contig8459.16065.1|Name=mRNA_H-elongata_contig8459.16065.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=486bp|location=Sequence derived from alignment at H-elongata_contig8459:2392..3109- (Himanthalia elongata Himel1 dioecious)
GAGGACCTAGCGCTGGAGAGTTTTGGGGGCATCGTGTTTAACGGCGTGCC
TTTGGATGGATGCTACACGATCAACCCAACTTATAATGTTTCTGGATATT
ATCCGTACTTCGCTGGACCCGTGGAAGATGGAGTGGCGATCCTATTCGTC
AATGAGTATGAGGACCTAGCGCTGGAGAGTTTTGGGGGCATCGTGTTTAA
CGGCGTGCCTTTGGATGGATGCTACACGATCAACCCAACTTATAATGTTT
CTGGATATTATCCGTACTTCGCTGGACCCGTGGAAGATGGAGTGGCGATC
CTATTCGTCAATGAGTATAACGGTACGGGTGAACATTTGGGGCTGTTCTG
GTCTTTGGGAGTCTACGAAAGCGGCGTCGTAGATGTGGTGTGTTTGCTTG
ACAACGGTACGGGTGAACATTTGGGGCTGTTCTGGTCTTTGGGAGTCTAC
GAAAGCGGCGTCGTAGATGTGGTGTGTTTGCTTGAC
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