mRNA_H-elongata_contig8429.16044.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig8429.16044.1
Unique NamemRNA_H-elongata_contig8429.16044.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
[Close]
BLAST of mRNA_H-elongata_contig8429.16044.1 vs. uniprot
Match: D7FM89_ECTSI (Flagellar outer arm dynein 14 kDa light chain LC5 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FM89_ECTSI)

HSP 1 Score: 170 bits (431), Expect = 6.970e-53
Identity = 77/104 (74.04%), Postives = 91/104 (87.50%), Query Frame = 1 
Query:    4 VNSSDELDKITADNKDKLVVIDYSTTWCGPCKMVLPKYEALAEQYSQSVFLKVIGDSSSEASVLMKREGVRSVPSFHFWKGGKKIDSVQGANEEDLEEALRGLH 315
            + S  ELDK+T+DNKDKLVV+DYSTTWCGPCKM+LPK+E LAEQYS +VF+KVIGDS+++AS LMKREGVRSVPSFHFWK GKK++ V GANEE LE+ LR  H
Sbjct:   20 IGSFAELDKLTSDNKDKLVVVDYSTTWCGPCKMILPKFEKLAEQYSDAVFVKVIGDSTNDASQLMKREGVRSVPSFHFWKDGKKVEKVNGANEEALEQTLRDFH 123
[Close]
BLAST of mRNA_H-elongata_contig8429.16044.1 vs. uniprot
Match: A0A6H5K2L8_9PHAE (Thioredoxin domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K2L8_9PHAE)

HSP 1 Score: 170 bits (431), Expect = 2.390e-52
Identity = 77/104 (74.04%), Postives = 91/104 (87.50%), Query Frame = 1 
Query:    4 VNSSDELDKITADNKDKLVVIDYSTTWCGPCKMVLPKYEALAEQYSQSVFLKVIGDSSSEASVLMKREGVRSVPSFHFWKGGKKIDSVQGANEEDLEEALRGLH 315
            + S  ELDK+T+DNKDKLVV+DYSTTWCGPCKM+LPK+E LAEQYS +VF+KVIGDS+++AS LMKREGVRSVPSFHFWK GKK++ V GANEE LE+ LR  H
Sbjct:   59 IGSFAELDKLTSDNKDKLVVVDYSTTWCGPCKMILPKFEKLAEQYSDAVFVKVIGDSTNDASQLMKREGVRSVPSFHFWKDGKKVEKVNGANEEALEQTLRDFH 162
[Close]
BLAST of mRNA_H-elongata_contig8429.16044.1 vs. uniprot
Match: A0A7S0Z4I3_9CRYP (Hypothetical protein n=1 Tax=Hemiselmis tepida TaxID=464990 RepID=A0A7S0Z4I3_9CRYP)

HSP 1 Score: 144 bits (364), Expect = 2.900e-42
Identity = 63/101 (62.38%), Postives = 83/101 (82.18%), Query Frame = 1 
Query:    4 VNSSDELDKITADNKDKLVVIDYSTTWCGPCKMVLPKYEALAEQYSQSVFLKVIGDSSSEASVLMKREGVRSVPSFHFWKGGKKIDSVQGANEEDLEEALR 306
            + ++ ELD +   + DKLVVIDYSTTWCGPCK+V PKYEAL++ Y+ +VFLK IGDSS+EA+ LMKREG+RSVP+FHFWKGG+K++ + GAN E LE  ++
Sbjct:   51 ITTAGELDDVVKSSGDKLVVIDYSTTWCGPCKIVAPKYEALSDVYTDAVFLKCIGDSSAEATALMKREGIRSVPAFHFWKGGEKVEVIAGANVEALENTIK 151
[Close]
BLAST of mRNA_H-elongata_contig8429.16044.1 vs. uniprot
Match: A0A7S1MTD0_HEMAN (Hypothetical protein n=2 Tax=Hemiselmis andersenii TaxID=464988 RepID=A0A7S1MTD0_HEMAN)

HSP 1 Score: 144 bits (364), Expect = 3.170e-42
Identity = 63/101 (62.38%), Postives = 83/101 (82.18%), Query Frame = 1 
Query:    4 VNSSDELDKITADNKDKLVVIDYSTTWCGPCKMVLPKYEALAEQYSQSVFLKVIGDSSSEASVLMKREGVRSVPSFHFWKGGKKIDSVQGANEEDLEEALR 306
            + ++ ELD +   + DKLVVIDYSTTWCGPCK+V PKYEAL+E Y+ +VFLK IGDSS++A+ LMKREG+RSVP+FHFWKGG+K++ + GAN E LE  ++
Sbjct:   54 ITTAGELDDVVKSSGDKLVVIDYSTTWCGPCKIVAPKYEALSEVYTDAVFLKCIGDSSADATALMKREGIRSVPAFHFWKGGEKVEVIAGANVEALENTIK 154
[Close]
BLAST of mRNA_H-elongata_contig8429.16044.1 vs. uniprot
Match: A0A835ZHZ2_9STRA (Flagellar outer arm dynein 14 kDa light chain LC5 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZHZ2_9STRA)

HSP 1 Score: 142 bits (359), Expect = 1.520e-41
Identity = 66/102 (64.71%), Postives = 79/102 (77.45%), Query Frame = 1 
Query:    1 QVNSSDELDKITADNKDKLVVIDYSTTWCGPCKMVLPKYEALAEQYSQSVFLKVIGDSSSEASVLMKREGVRSVPSFHFWKGGKKIDSVQGANEEDLEEALR 306
            +V+S + LDK  A     LVV+DYSTTWCGPCK++ PKYE L+ +Y+ +VFLKVIGDSS  A+ LMKREGVRSVPSFHFWK GKK+D V GAN E LE  +R
Sbjct:   47 EVDSEEALDKTIAAAGSGLVVVDYSTTWCGPCKVIFPKYEELSNKYTNAVFLKVIGDSSQAATKLMKREGVRSVPSFHFWKDGKKVDQVNGANSEALETTIR 148
[Close]
BLAST of mRNA_H-elongata_contig8429.16044.1 vs. uniprot
Match: B8BVB7_THAPS (Thioredoxin f n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8BVB7_THAPS)

HSP 1 Score: 136 bits (343), Expect = 3.330e-39
Identity = 63/101 (62.38%), Postives = 79/101 (78.22%), Query Frame = 1 
Query:    4 VNSSDELDKITADNKDKLVVIDYSTTWCGPCKMVLPKYEALAEQYSQSVFLKVIGDSSSEASVLMKREGVRSVPSFHFWKGGKKIDSVQGANEEDLEEALR 306
            VNS  E D   +   DKLVVIDYSTTWCGPCK++ PK++ L++QY  SVF+KVIGD+S +AS LMKREGVRSVPSFH++K G K+D V GAN E +E A++
Sbjct:   41 VNSEAEFDAKVSGAGDKLVVIDYSTTWCGPCKVIAPKFDELSDQYPDSVFIKVIGDASPDASKLMKREGVRSVPSFHYFKNGSKVDVVNGANAEAIEAAIK 141
[Close]
BLAST of mRNA_H-elongata_contig8429.16044.1 vs. uniprot
Match: A0A6U0YZC0_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A6U0YZC0_9STRA)

HSP 1 Score: 137 bits (344), Expect = 4.020e-39
Identity = 63/102 (61.76%), Postives = 83/102 (81.37%), Query Frame = 1 
Query:    1 QVNSSDELDKITADNKDKLVVIDYSTTWCGPCKMVLPKYEALAEQYSQSVFLKVIGDSSSEASVLMKREGVRSVPSFHFWKGGKKIDSVQGANEEDLEEALR 306
            +V+S  E D++ A + D LVV+DYSTTWCGPCK++ PK+ AL+++  Q+VFLKV+GDSS+EAS LMKREGVRSVPSFHFWK  ++++ V GAN E LE +LR
Sbjct:   58 EVSSEAEFDQVMASSGDALVVVDYSTTWCGPCKVMEPKFVALSDETPQAVFLKVVGDSSAEASKLMKREGVRSVPSFHFWKNKERLEVVNGANTEALEGSLR 159
[Close]
BLAST of mRNA_H-elongata_contig8429.16044.1 vs. uniprot
Match: A0A6S9BEG3_9STRA (Hypothetical protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A6S9BEG3_9STRA)

HSP 1 Score: 134 bits (338), Expect = 2.360e-38
Identity = 60/100 (60.00%), Postives = 80/100 (80.00%), Query Frame = 1 
Query:    4 VNSSDELDKITADNKDKLVVIDYSTTWCGPCKMVLPKYEALAEQYSQSVFLKVIGDSSSEASVLMKREGVRSVPSFHFWKGGKKIDSVQGANEEDLEEAL 303
            ++S  + DK      D LVV+DYSTTWCGPCK++ PK++ L+EQYS +VF+KVIGD+S +AS LMKREGVRSVPSFH++KGG+K++ V GAN E +E A+
Sbjct:   48 IDSEAKFDKTIESAGDSLVVVDYSTTWCGPCKVIAPKFDELSEQYSDAVFVKVIGDASPDASKLMKREGVRSVPSFHYFKGGEKVEVVNGANAEAIEAAI 147
[Close]
BLAST of mRNA_H-elongata_contig8429.16044.1 vs. uniprot
Match: A0A7R9U0I5_9STRA (Hypothetical protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9U0I5_9STRA)

HSP 1 Score: 134 bits (338), Expect = 2.430e-38
Identity = 60/101 (59.41%), Postives = 80/101 (79.21%), Query Frame = 1 
Query:    1 QVNSSDELDKITADNKDKLVVIDYSTTWCGPCKMVLPKYEALAEQYSQSVFLKVIGDSSSEASVLMKREGVRSVPSFHFWKGGKKIDSVQGANEEDLEEAL 303
            ++  +D+ DK  +   D +VV+DYSTTWCGPCK++ P +  L+E++  +VFLKVIGDSS+EA+ LMKREGVRSVP+FHFWKGG+K+D V GAN + LE AL
Sbjct:   46 EIGDTDKFDKALSAAGDAVVVVDYSTTWCGPCKVIAPFFAELSEKHQDTVFLKVIGDSSAEATKLMKREGVRSVPAFHFWKGGEKVDIVSGANPDALEGAL 146
[Close]
BLAST of mRNA_H-elongata_contig8429.16044.1 vs. uniprot
Match: A0A7S1FX09_9STRA (Hypothetical protein n=1 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1FX09_9STRA)

HSP 1 Score: 132 bits (331), Expect = 3.170e-37
Identity = 60/101 (59.41%), Postives = 77/101 (76.24%), Query Frame = 1 
Query:    4 VNSSDELDKITADNKDKLVVIDYSTTWCGPCKMVLPKYEALAEQYSQSVFLKVIGDSSSEASVLMKREGVRSVPSFHFWKGGKKIDSVQGANEEDLEEALR 306
            + S    DK      D LVVIDYSTTWCGPCK++ PKY+ L+++Y  +VFLKVIGDSS++AS LMKREGVRSVPSFH++K G K++ V GAN E +E A++
Sbjct:   53 IGSEAAFDKTIGGAGDALVVIDYSTTWCGPCKVIAPKYDELSDKYPDAVFLKVIGDSSADASKLMKREGVRSVPSFHYYKNGNKVEVVNGANAEAIEAAIK 153
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig8429.16044.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FM89_ECTSI6.970e-5374.04Flagellar outer arm dynein 14 kDa light chain LC5 ... [more]
A0A6H5K2L8_9PHAE2.390e-5274.04Thioredoxin domain-containing protein n=1 Tax=Ecto... [more]
A0A7S0Z4I3_9CRYP2.900e-4262.38Hypothetical protein n=1 Tax=Hemiselmis tepida Tax... [more]
A0A7S1MTD0_HEMAN3.170e-4262.38Hypothetical protein n=2 Tax=Hemiselmis andersenii... [more]
A0A835ZHZ2_9STRA1.520e-4164.71Flagellar outer arm dynein 14 kDa light chain LC5 ... [more]
B8BVB7_THAPS3.330e-3962.38Thioredoxin f n=1 Tax=Thalassiosira pseudonana Tax... [more]
A0A6U0YZC0_9STRA4.020e-3961.76Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A6S9BEG3_9STRA2.360e-3860.00Hypothetical protein n=1 Tax=Ditylum brightwellii ... [more]
A0A7R9U0I5_9STRA2.430e-3859.41Hypothetical protein n=1 Tax=Pinguiococcus pyrenoi... [more]
A0A7S1FX09_9STRA3.170e-3759.41Hypothetical protein n=1 Tax=Corethron hystrix Tax... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig8429contigH-elongata_contig8429:6913..7991 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score171.0
Seed ortholog evalue2.9e-40
Seed eggNOG ortholog2880.D7FM89
Preferred nameTrx-f
KEGG koko:K01456,ko:K03671
KEGG Pathwayko04141,ko04621,ko05418,map04141,map04621,map05418
GOsGO:0000224,GO:0001558,GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005829,GO:0006464,GO:0006508,GO:0006511,GO:0006515,GO:0006516,GO:0006517,GO:0006807,GO:0006950,GO:0007275,GO:0007399,GO:0008150,GO:0008152,GO:0008361,GO:0009056,GO:0009057,GO:0009100,GO:0009987,GO:0010033,GO:0010243,GO:0010498,GO:0010721,GO:0010769,GO:0010771,GO:0010975,GO:0010977,GO:0015035,GO:0015036,GO:0016043,GO:0016491,GO:0016651,GO:0016667,GO:0016668,GO:0016787,GO:0016810,GO:0016811,GO:0019538,GO:0019725,GO:0019941,GO:0022008,GO:0022603,GO:0022604,GO:0030154,GO:0030163,GO:0030308,GO:0030433,GO:0031344,GO:0031345,GO:0032501,GO:0032502,GO:0032535,GO:0033554,GO:0034976,GO:0036211,GO:0036503,GO:0040008,GO:0042221,GO:0042592,GO:0043161,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043412,GO:0043632,GO:0044237,GO:0044238,GO:0044248,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044424,GO:0044444,GO:0044464,GO:0045454,GO:0045595,GO:0045596,GO:0045664,GO:0045665,GO:0045926,GO:0047134,GO:0048519,GO:0048523,GO:0048638,GO:0048640,GO:0048670,GO:0048671,GO:0048699,GO:0048731,GO:0048856,GO:0048869,GO:0050767,GO:0050768,GO:0050770,GO:0050771,GO:0050789,GO:0050793,GO:0050794,GO:0050896,GO:0051093,GO:0051128,GO:0051129,GO:0051239,GO:0051241,GO:0051603,GO:0051716,GO:0051960,GO:0051961,GO:0055114,GO:0060284,GO:0061387,GO:0065007,GO:0065008,GO:0071704,GO:0071840,GO:0090066,GO:0120035,GO:1901135,GO:1901136,GO:1901564,GO:1901565,GO:1901575,GO:1901698,GO:2000026
EggNOG free text desc.cell redox homeostasis
EggNOG OGsCOG0526@1,KOG0907@2759
EC3.5.1.52
COG Functional cat.CO
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko03110
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionflagellar outer arm dynein 14 kDa light chain LC5
Ec32 orthologEc-16_004650.1
Exons3
Model size318
Cds size318
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig8429.16044.1prot_H-elongata_contig8429.16044.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig8429 6913..7991 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931248.1723678-CDS-H-elongata_contig8429:6912..69751622931248.1723678-CDS-H-elongata_contig8429:6912..6975Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig8429 6913..6975 -
1691679758.7758288-CDS-H-elongata_contig8429:6912..69751691679758.7758288-CDS-H-elongata_contig8429:6912..6975Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig8429 6913..6975 -
1622931248.1941938-CDS-H-elongata_contig8429:7486..75821622931248.1941938-CDS-H-elongata_contig8429:7486..7582Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig8429 7487..7582 -
1691679758.7889526-CDS-H-elongata_contig8429:7486..75821691679758.7889526-CDS-H-elongata_contig8429:7486..7582Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig8429 7487..7582 -
1622931248.2120993-CDS-H-elongata_contig8429:7832..79911622931248.2120993-CDS-H-elongata_contig8429:7832..7991Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig8429 7833..7991 -
1691679758.7994053-CDS-H-elongata_contig8429:7832..79911691679758.7994053-CDS-H-elongata_contig8429:7832..7991Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig8429 7833..7991 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig8429.16044.1

>prot_H-elongata_contig8429.16044.1 ID=prot_H-elongata_contig8429.16044.1|Name=mRNA_H-elongata_contig8429.16044.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=106bp
QVNSSDELDKITADNKDKLVVIDYSTTWCGPCKMVLPKYEALAEQYSQSV
FLKVIGDSSSEASVLMKREGVRSVPSFHFWKGGKKIDSVQGANEEDLEEA
LRGLH*
back to top

mRNA from alignment at H-elongata_contig8429:6913..7991-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig8429.16044.1 ID=mRNA_H-elongata_contig8429.16044.1|Name=mRNA_H-elongata_contig8429.16044.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1079bp|location=Sequence derived from alignment at H-elongata_contig8429:6913..7991- (Himanthalia elongata Himel1 dioecious)
CAGGTGAATTCATCCGATGAGCTGGACAAGATCACCGCGGACAACAAGGA
CAAGCTTGTCGTCATTGACTACTCCACGACTTGGTGTGGTCCTTGTAAGA
TGGTGCTGCCCAAGTACGAGGCACTCGCCGAACAGTACTCACAATCGGTT
TTCCTAAAGGTTCGTCCGGGGCACCGCGCGTATGCCGTACCGCGACACTG
TTGTGTAGACCGCTCGCCGCCCTGACGACGCGCACGCCACATCACCGTCG
AACGCTTTCTCATGAGGGAAGACTAAATGGTCGAGTAATGGCGCAGTCCT
TGCTTCACAGTACATGATACTTCAGACTGCATGTGGCTTAGCCCGTCGGC
CGAAACAATCCCGCTTGGTCGCGCTGAGCTCTCGTATACACGGCGCACGA
TACGTGCAGGTGATCGGGGACAGTTCGAGCGAGGCGTCGGTGCTGATGAA
GAGGGAGGGCGTGAGATCGGTGCCTTCATTCCATTTCTGGAAAGGGGGTA
AAAAGGTGAAACGATTCTCAAGTTCTTCTCCTGATTCTCCGCCTAGGCTC
GTCTGACCCCACTCCCGCTTTAGACTCTACTTGGAGGCTGTGGCTCCCAA
GTTGCCACTCTTACGAGTATAGCTTTAATCATAAGGGATAGTTGGATTGA
TGTATTGTGTATGTAGGAGATTTTTCCATCCGAGTCAAGGGTTCGGAGGC
ATTATCTTCTGGTTGTCCTCGTGGAGTTGGATTACCGAAAAATAATCCAC
GAACTTGGGAGGGGGGGGCTATTGGGTTATAACCCCTCGTGCTAGATCGC
GTCCACTTAACATATATTTCACGTCCCTCCCCGTGCATTTCACGGGTCTG
GTAGCTCGCACTAGCTAGCTACGAATGGATTGTGTGGGAGAAATTTCAAC
TTTAGGGCCTTCAAGGCTACTTGCGCGATGTACAAGAGAGGATACGGGTA
CCGCTTTAGACCCAACAAGATCTCGATGCGTCCGCCTTGCTCTATTTTCG
GGATGTGCTGCAAAAGATTGATTCCGTGCAGGGGGCGAACGAGGAGGATC
TCGAGGAAGCTCTTCGCGGGCTACACTGA
back to top

Coding sequence (CDS) from alignment at H-elongata_contig8429:6913..7991-

>mRNA_H-elongata_contig8429.16044.1 ID=mRNA_H-elongata_contig8429.16044.1|Name=mRNA_H-elongata_contig8429.16044.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=636bp|location=Sequence derived from alignment at H-elongata_contig8429:6913..7991- (Himanthalia elongata Himel1 dioecious)
CAGGTGAATTCATCCGATGAGCTGGACAAGATCACCGCGGACAACAAGGA
CAAGCTTGTCGTCATTGACTACTCCACGACTTGGTGTGGTCCTTGTAAGA
TGGTGCTGCCCAAGTACGAGGCACTCGCCGAACAGTACTCACAATCGGTT
TTCCTAAAGCAGGTGAATTCATCCGATGAGCTGGACAAGATCACCGCGGA
CAACAAGGACAAGCTTGTCGTCATTGACTACTCCACGACTTGGTGTGGTC
CTTGTAAGATGGTGCTGCCCAAGTACGAGGCACTCGCCGAACAGTACTCA
CAATCGGTTTTCCTAAAGGTGATCGGGGACAGTTCGAGCGAGGCGTCGGT
GCTGATGAAGAGGGAGGGCGTGAGATCGGTGCCTTCATTCCATTTCTGGA
AAGGGGGTAAAAAGGTGATCGGGGACAGTTCGAGCGAGGCGTCGGTGCTG
ATGAAGAGGGAGGGCGTGAGATCGGTGCCTTCATTCCATTTCTGGAAAGG
GGGTAAAAAGATTGATTCCGTGCAGGGGGCGAACGAGGAGGATCTCGAGG
AAGCTCTTCGCGGGCTACACTGAATTGATTCCGTGCAGGGGGCGAACGAG
GAGGATCTCGAGGAAGCTCTTCGCGGGCTACACTGA
back to top