mRNA_H-elongata_contig84282.16042.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig84282.16042.1
Unique NamemRNA_H-elongata_contig84282.16042.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig84282.16042.1 vs. uniprot
Match: A0A6H5KJS1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJS1_9PHAE)

HSP 1 Score: 87.0 bits (214), Expect = 1.220e-15
Identity = 56/112 (50.00%), Postives = 71/112 (63.39%), Query Frame = 1 
Query:  619 PATEASGMSTMLTRGTNAAEALKARGARRAGLPALDAARDVATLGGTERQIASRTSALMRRMTEAGRKGRWREVLPALEEMLDQGLVSDGRPFTVAIKALGDNRQTDRALTL 954
            PA   +G ST      N+   +  R  R+  LPA D     A L    ++  S  +A MRRMTEAG++GRWR+V+PALEEML+ GLV+DGRP+TVAIKALGDN +   AL L
Sbjct:  155 PAGVTAGSSTTDANMQNSGTRIDERSRRK--LPAPDTP---ARLVVEAKKSTSAAAAFMRRMTEAGKRGRWRDVVPALEEMLNLGLVTDGRPYTVAIKALGDNGKAAEALKL 261
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BLAST of mRNA_H-elongata_contig84282.16042.1 vs. uniprot
Match: D7G0E7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0E7_ECTSI)

HSP 1 Score: 82.4 bits (202), Expect = 1.140e-13
Identity = 39/55 (70.91%), Postives = 48/55 (87.27%), Query Frame = 1 
Query:  763 RQIASRTSALMRRMTEAGRKGRWREVLPALEEMLDQGLVSDGRPFTVAIKALGDN 927
            ++ AS  +A MRRMTEAG++GRWR+V+PALEEM   GLV+DGRP+TVAIKALGDN
Sbjct:   30 KKSASAAAAFMRRMTEAGKRGRWRDVVPALEEMRSLGLVTDGRPYTVAIKALGDN 84
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig84282.16042.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KJS1_9PHAE1.220e-1550.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G0E7_ECTSI1.140e-1370.91Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig84282contigH-elongata_contig84282:810..2433 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score82.4
Seed ortholog evalue4.2e-13
Seed eggNOG ortholog2880.D7G0E7
EggNOG free text desc.endonuclease activity
EggNOG OGsKOG4197@1,KOG4197@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons3
Model size960
Cds size960
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig84282.16042.1prot_H-elongata_contig84282.16042.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig84282 810..2433 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931247.88651-CDS-H-elongata_contig84282:809..9421622931247.88651-CDS-H-elongata_contig84282:809..942Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig84282 810..942 -
1691679758.6718364-CDS-H-elongata_contig84282:809..9421691679758.6718364-CDS-H-elongata_contig84282:809..942Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig84282 810..942 -
1622931247.905039-CDS-H-elongata_contig84282:1494..19041622931247.905039-CDS-H-elongata_contig84282:1494..1904Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig84282 1495..1904 -
1691679758.6816835-CDS-H-elongata_contig84282:1494..19041691679758.6816835-CDS-H-elongata_contig84282:1494..1904Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig84282 1495..1904 -
1622931247.93496-CDS-H-elongata_contig84282:2016..24331622931247.93496-CDS-H-elongata_contig84282:2016..2433Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig84282 2017..2433 -
1691679758.6893835-CDS-H-elongata_contig84282:2016..24331691679758.6893835-CDS-H-elongata_contig84282:2016..2433Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig84282 2017..2433 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig84282.16042.1

>prot_H-elongata_contig84282.16042.1 ID=prot_H-elongata_contig84282.16042.1|Name=mRNA_H-elongata_contig84282.16042.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=320bp
LGQTAPPFPADSYPSLCCCLDCFILLNSQQAMSSRESKSLRYNVSTMLAF
GFPTTPTTSSAVHQPASIPQCCVRGPPRGIALAAGRDFDLATQRPALCPP
NHTIISWKRFPRRGGWPALGMAAEASTGDSGVGLVESKEVTTDKGARGEI
IGSRRDRHGAGWDSTSTRSTRGVGGEILAGTHDSNIATPSNGSDVFVWPG
LSTPTMPATEASGMSTMLTRGTNAAEALKARGARRAGLPALDAARDVATL
GGTERQIASRTSALMRRMTEAGRKGRWREVLPALEEMLDQGLVSDGRPFT
VAIKALGDNRQTDRALTLLQ
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mRNA from alignment at H-elongata_contig84282:810..2433-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig84282.16042.1 ID=mRNA_H-elongata_contig84282.16042.1|Name=mRNA_H-elongata_contig84282.16042.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1624bp|location=Sequence derived from alignment at H-elongata_contig84282:810..2433- (Himanthalia elongata Himel1 dioecious)
CTTGGCCAGACAGCACCTCCTTTCCCTGCCGACTCATATCCATCGCTATG
CTGCTGCCTTGATTGCTTCATTCTCTTAAACTCGCAACAAGCGATGTCTT
CTCGGGAGTCGAAATCACTGCGATACAATGTCAGCACCATGCTCGCGTTC
GGCTTTCCTACAACCCCGACCACGAGCAGCGCTGTGCATCAACCAGCCTC
AATCCCGCAGTGTTGTGTCCGGGGTCCACCACGGGGGATCGCTCTTGCTG
CCGGCCGTGACTTTGACCTTGCGACTCAACGACCAGCGCTGTGTCCTCCC
AATCACACCATCATCTCATGGAAGAGATTCCCTAGGAGGGGTGGCTGGCC
GGCCCTTGGAATGGCTGCAGAAGCTTCTACGGGAGATTCCGGGGTTGGCC
TGGTCGAGAGTAAAGAGGTAGGTGTAGTCGAGGAGGTTGTTGAATCATAT
TCGGCAGGCCTTAGAGAAGCAAGACTGGGGACTATACCCATCATTGTCGA
CCCGATCCTTGCCTGTTGTCCGTCCATAGGTGACTACAGACAAAGGCGCC
CGGGGTGAAATAATCGGCAGCAGAAGAGACCGCCATGGCGCTGGCTGGGA
TAGTACCAGTACCAGAAGCACCAGGGGTGTTGGTGGAGAGATACTTGCTG
GTACACATGACTCGAACATCGCGACACCCAGCAACGGATCCGATGTTTTC
GTCTGGCCTGGGTTGAGTACCCCGACAATGCCAGCAACTGAAGCGTCGGG
AATGTCGACAATGCTGACCAGAGGCACCAATGCAGCAGAAGCGTTGAAAG
CAAGGGGGGCAAGAAGAGCGGGGCTCCCGGCTCTTGATGCGGCTCGAGAT
GTGGCGACGCTTGGGGGAACGGAGCGGCAGATAGCCAGCAGGACTTCGGC
CCTCATGCGGCGCATGACCGAAGCTGGGAGAAAGGGCAGGTACTATTGCG
CTCTAATGTACAGTATAAAGCAGAAGTCTGGAAATCGCTCCCAGCGATCA
TATTTTTGACTCGCTCTTGCACCCTTTTCGATGAAAGCCTTAGGAACCAT
TAGCGCTGGATAAACCGTTTTACTGTAGTACTCATACCCCAGTTGCAGGG
GGGAAATGCGCCACGCAGGGATAAATTAGATTGCCCAAGGTTTCTTGTCC
GTGATGCGTTTTCCACCATTGTAGCGGTCTCTATCGAGGGATGAAATATT
GTCGCGCCCAAGGTCGATTTAGTTACTAGAGTGCTGCTAGGCCGGAGAGT
TCGAACGCTTTGGCCTGGAAGCTGCTATAGAAGAGCGATGCATCGAATAC
GGATGCCCTAGTGAGCCGTAGTAAGCTCGATTCCACTCGGCCCTCCGAGA
AAAGCGTCGGCAACGGACACATCCATCACGTGGAAGTGGGCAGACACCAG
CAGCATAGCTATTGTTAATAGTAGTGCGTGCCAAAGCGTACGATGGGTTC
TGCTGTATTCGAGGCTTGAAATCATCCTCTGGCCGTGAAAGGTGGCGCGA
GGTGCTGCCCGCATTGGAGGAGATGCTGGATCAGGGACTGGTCAGCGACG
GGCGGCCCTTCACGGTGGCCATCAAGGCGTTGGGGGATAACCGGCAGACG
GACCGAGCGTTGACGTTACTCCAG
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Coding sequence (CDS) from alignment at H-elongata_contig84282:810..2433-

>mRNA_H-elongata_contig84282.16042.1 ID=mRNA_H-elongata_contig84282.16042.1|Name=mRNA_H-elongata_contig84282.16042.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1920bp|location=Sequence derived from alignment at H-elongata_contig84282:810..2433- (Himanthalia elongata Himel1 dioecious)
CTTGGCCAGACAGCACCTCCTTTCCCTGCCGACTCATATCCATCGCTATG
CTGCTGCCTTGATTGCTTCATTCTCTTAAACTCGCAACAAGCGATGTCTT
CTCGGGAGTCGAAATCACTGCGATACAATGTCAGCACCATGCTCGCGTTC
GGCTTTCCTACAACCCCGACCACGAGCAGCGCTGTGCATCAACCAGCCTC
AATCCCGCAGTGTTGTGTCCGGGGTCCACCACGGGGGATCGCTCTTGCTG
CCGGCCGTGACTTTGACCTTGCGACTCAACGACCAGCGCTGTGTCCTCCC
AATCACACCATCATCTCATGGAAGAGATTCCCTAGGAGGGGTGGCTGGCC
GGCCCTTGGAATGGCTGCAGAAGCTTCTACGGGAGATTCCGGGGTTGGCC
TGGTCGAGAGTAAAGAGCTTGGCCAGACAGCACCTCCTTTCCCTGCCGAC
TCATATCCATCGCTATGCTGCTGCCTTGATTGCTTCATTCTCTTAAACTC
GCAACAAGCGATGTCTTCTCGGGAGTCGAAATCACTGCGATACAATGTCA
GCACCATGCTCGCGTTCGGCTTTCCTACAACCCCGACCACGAGCAGCGCT
GTGCATCAACCAGCCTCAATCCCGCAGTGTTGTGTCCGGGGTCCACCACG
GGGGATCGCTCTTGCTGCCGGCCGTGACTTTGACCTTGCGACTCAACGAC
CAGCGCTGTGTCCTCCCAATCACACCATCATCTCATGGAAGAGATTCCCT
AGGAGGGGTGGCTGGCCGGCCCTTGGAATGGCTGCAGAAGCTTCTACGGG
AGATTCCGGGGTTGGCCTGGTCGAGAGTAAAGAGGTGACTACAGACAAAG
GCGCCCGGGGTGAAATAATCGGCAGCAGAAGAGACCGCCATGGCGCTGGC
TGGGATAGTACCAGTACCAGAAGCACCAGGGGTGTTGGTGGAGAGATACT
TGCTGGTACACATGACTCGAACATCGCGACACCCAGCAACGGATCCGATG
TTTTCGTCTGGCCTGGGTTGAGTACCCCGACAATGCCAGCAACTGAAGCG
TCGGGAATGTCGACAATGCTGACCAGAGGCACCAATGCAGCAGAAGCGTT
GAAAGCAAGGGGGGCAAGAAGAGCGGGGCTCCCGGCTCTTGATGCGGCTC
GAGATGTGGCGACGCTTGGGGGAACGGAGCGGCAGATAGCCAGCAGGACT
TCGGCCCTCATGCGGCGCATGACCGAAGCTGGGAGAAAGGGCAGGTGACT
ACAGACAAAGGCGCCCGGGGTGAAATAATCGGCAGCAGAAGAGACCGCCA
TGGCGCTGGCTGGGATAGTACCAGTACCAGAAGCACCAGGGGTGTTGGTG
GAGAGATACTTGCTGGTACACATGACTCGAACATCGCGACACCCAGCAAC
GGATCCGATGTTTTCGTCTGGCCTGGGTTGAGTACCCCGACAATGCCAGC
AACTGAAGCGTCGGGAATGTCGACAATGCTGACCAGAGGCACCAATGCAG
CAGAAGCGTTGAAAGCAAGGGGGGCAAGAAGAGCGGGGCTCCCGGCTCTT
GATGCGGCTCGAGATGTGGCGACGCTTGGGGGAACGGAGCGGCAGATAGC
CAGCAGGACTTCGGCCCTCATGCGGCGCATGACCGAAGCTGGGAGAAAGG
GCAGGTGGCGCGAGGTGCTGCCCGCATTGGAGGAGATGCTGGATCAGGGA
CTGGTCAGCGACGGGCGGCCCTTCACGGTGGCCATCAAGGCGTTGGGGGA
TAACCGGCAGACGGACCGAGCGTTGACGTTACTCCAGGTGGCGCGAGGTG
CTGCCCGCATTGGAGGAGATGCTGGATCAGGGACTGGTCAGCGACGGGCG
GCCCTTCACGGTGGCCATCAAGGCGTTGGGGGATAACCGGCAGACGGACC
GAGCGTTGACGTTACTCCAG
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