mRNA_H-elongata_contig842.16038.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig842.16038.1
Unique NamemRNA_H-elongata_contig842.16038.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig842.16038.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig842contigH-elongata_contig842:14539..18459 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score68.2
Seed ortholog evalue3.1e-09
Seed eggNOG ortholog2880.D8LSS5
KEGG koko:K16547
EggNOG free text desc.protein localization to centrosome
EggNOG OGsKOG4378@1,KOG4378@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03036,ko04812
Hectar predicted targeting categoryother localisation
Exons3
Model size719
Cds size363
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig842.16038.1prot_H-elongata_contig842.16038.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig842 14573..18137 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931247.4959052-UTR-H-elongata_contig842:14538..145721622931247.4959052-UTR-H-elongata_contig842:14538..14572Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig842 14539..14572 +
1691679758.5347357-UTR-H-elongata_contig842:14538..145721691679758.5347357-UTR-H-elongata_contig842:14538..14572Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig842 14539..14572 +
1622931247.5487018-UTR-H-elongata_contig842:18137..184591622931247.5487018-UTR-H-elongata_contig842:18137..18459Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig842 18138..18459 +
1691679758.567638-UTR-H-elongata_contig842:18137..184591691679758.567638-UTR-H-elongata_contig842:18137..18459Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig842 18138..18459 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931247.5117586-CDS-H-elongata_contig842:14572..145901622931247.5117586-CDS-H-elongata_contig842:14572..14590Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig842 14573..14590 +
1691679758.5444171-CDS-H-elongata_contig842:14572..145901691679758.5444171-CDS-H-elongata_contig842:14572..14590Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig842 14573..14590 +
1622931247.52603-CDS-H-elongata_contig842:15605..156801622931247.52603-CDS-H-elongata_contig842:15605..15680Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig842 15606..15680 +
1691679758.5522332-CDS-H-elongata_contig842:15605..156801691679758.5522332-CDS-H-elongata_contig842:15605..15680Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig842 15606..15680 +
1622931247.5367882-CDS-H-elongata_contig842:17867..181371622931247.5367882-CDS-H-elongata_contig842:17867..18137Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig842 17868..18137 +
1691679758.5599306-CDS-H-elongata_contig842:17867..181371691679758.5599306-CDS-H-elongata_contig842:17867..18137Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig842 17868..18137 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig842.16038.1

>prot_H-elongata_contig842.16038.1 ID=prot_H-elongata_contig842.16038.1|Name=mRNA_H-elongata_contig842.16038.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=121bp
MSSASERPIRAIALSPGAQRVAAAGDAGDIEIWNTKDKRKMKADTVRQGS
PVTCVSFLESEARVAAGDVGGRVLVHRLKGLADEDEVRRMERIDRFGSGK
VAAASRHLPRRSRGRKGVRR*
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mRNA from alignment at H-elongata_contig842:14539..18459+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig842.16038.1 ID=mRNA_H-elongata_contig842.16038.1|Name=mRNA_H-elongata_contig842.16038.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=3921bp|location=Sequence derived from alignment at H-elongata_contig842:14539..18459+ (Himanthalia elongata Himel1 dioecious)
GGTGAAGCCCAGCGGGATTATCGTTCCGACCAAGATGTCGAGCGCATCCG
AGGTGAGGAAAAAGATGCGTGGGGCTGCATGCACCGTTCGGGACGATCAA
CTACCGGCGACCGTCGAGTGATGCACGCCTCTTTCGCGGCGGTGTTTTCC
CGTCCCCGCCCCCCCCCCTTATCGTATTTTCTTTTTTTCACAAGAATTAA
CGACAATGTTCGTCGGACGTGCAGCAGTACCCGCATCATTTTCGAACGCG
ATTTTGAGGCAGTGACCGGACGCGCCTCTGTAGCATGGCGTTTACTCGGT
ACCCCCTGCCTGAAATATGTCGGTGCATTCTCCCGTACATTTATGTCTCA
AACCACCCGGACGCTCATAAGACGAATTTCGGAGCTACTTCAAGTTAGGA
TGCCCTAGAGCAGTGAACCGTTTTTTAATGTCTTCCGGGAGATGCGTCTA
TTTGTGGCACGCGTCCGTTGCTGTCGATAGAGCCGCCCTAGAGAAACGAC
CCGCCACGATATCATCCCTAACGCTTTCTCGATTCAAGCGCAGGCGAACC
TCGCCTGCGGGCACTGATGACCAGAGTTTGTTATGGATGGAGGCATTTTG
GGTGACATACAGGGCAGAGCTATCTCATTTTTAGGGTGAAACGTACCTCG
GGGACGAAAATCATCATCCCCCCCCCGACCCCGTTTTTTTACAAGACACG
CCTCAAACAAAACATCGAAACCAGAGAGCAAGGAAGCAGCTTGTTGTTTC
TAGCAATATATTTTCAAAATTATTCACACGTGTGTGCTCTGTAGCTGTGT
GCGAGGTTAAATAATGCATTATGCGCCTGGACACCCATAAACTATCCCCT
GCCTCTGGATTCTTGTTCCACAACACCCCTCGGTCCCCAAAGACTGTTCG
AGGCTGAACCGTTTCAGTACGACGCACCGCGTTTCTCTCTAGGTGTCACG
TGTTAGGGTATTAAAGGGGCACCGCGTCTCCTTTTCGTCCTTCTCCGTCC
GCCTAGCTCCACGTCTCCCCCTGCCTTGCCTTGGCTGTGTGTCTGTCATG
TCCTTGGTCGGCACCAGCGCCCGATCCGAGCCATCGCGCTCAGCCCCGGA
GCACAAAGGGTGGCGGCCGCGGGGGATGCCGGTGACATAGAGGTAAGAGG
GGAGGGGGTTCGCGCTCGCAAAACGCGATGAAACTCGGAACTGCGGGCAA
AAGAGAGCAGCAGTCTGTCGTTAGAAACTTGAGTATTACAGGGGGGAAGC
AGGGAGGGAAACAATTAGGGTTTCTATCCATCATTTTTACTTTACCCGGG
CGGGGTAGTCTAGAAGTAGTATACTGTTGTACCCCTTGTCTAGAAGTAAT
ATACTGTTGTACCCCTTGTCTAGAAGTAGTATACTGTTGTACCCCTTGTC
TCGCGATGACTTCGGTAGCGAGTTCGGATCTTCAAGCGCGCGTAGAGTTC
CTTGGCAAATTCGGAATCTGTCAGGAATCGTGAGGAACCTTTGAAGTGAC
CCCTGTTTCTGTCCTCTGCAGCACGACCCAAAAGTCTTCACCGCTGCTGT
AGGGAGAAAAAAAGGCACAGGTGGCAGAACGTACACACGTCTGGAAGAGA
AAAAAAGGGACACAAAAGTGCGATCTAGAGCTAGCGTGTCGATATACTAA
ATATATTGAGTGATTGATTGGTTGATTTATCCACATATTATAGGGTTTCC
ACATGTCTTAAAAAGTGTATGAAAAGAAGACACTAAAGTGAAAAGAAACC
TGTCTGCCAGTGGCGGATCAATTTAGGTTCTTGTTCACTTTAGTGCATGT
TTTTCGTGTATTGTTTGTAACGCGTGGAAACCCTATAATATGTCGCTTTT
TCCGAGTATTAGTAGTATATACCACCATTACCATTTCCTTTTATATTGTA
TTGAAGAGTACGTTGAACGTTTTTTCCTTCCGGATGTTAGTTTTTCTACC
GTGAGACCAATATCAGCTGGATTTTGACATCAGCTTGTGTGAGAAAAAAA
AAAAGGAGAATTTTCTTCGCAACCGAAGAACACTATTAATACAGGACAGC
GACACAACTCAAGTCAGTCAGATAGTCTAGGTCTATCATGCACCAATCCC
GCTATTATAATTACAATTACTACATGCAGTATGATTATTATTATTAAAAG
ACATATGAACTCATTAGAACCCTCCGAACATCCACGCCTTCTTAGCACCA
TGAAAGGTGTAGTCCAGGGGACGAAGTTGAACGGGTCACCTCGTGGCGAC
GTCACACCCCGCTACAGGCACCACCAGGGGATAGGGGATGATTATAAATA
GCCACAAAAAATATCGTTAGGTCCATCCATCTGGTAACATCTAGTATAGT
CATATTTTTGTTGTTGTTGGTCACACATTTAGCAGAGTAACTTCATCGGG
ATTTGGTTGCCTTCTGCTCGTGGTCAGCTGAACAGAGGGAAAATAATTTT
TCCCTGTCCCCGTTCGCACCTGAAAATTTGATCTTATGGCTTGAGTTAGG
GGAAAAAGGGGCTGCAAAGAAATAGAGTTTACAAAAAAACTTCGAAGAAA
ACCGATGTTGATGAAAAATTTACTCTCCCCGCCGGTGTAAGGGTTTCGAA
AAGATGGATGGCGGGGAGGTGATGGACCAGCGGCCTCACCCGCGCGCAGT
TAAGGACTACATTAAGAAATTTGTTCTTTGCCACGAAGTTCAACACGAGT
ACAGCAGTACATGCGCGCCGGCCTCGGCACAGCGTAGGGTAGTCGCTCTC
CGGTTGATGTAAAGGGTCACCCGACGCAAACTGTCCGGACCATTTTCTCG
CCGATTTTTTTCTTTTGAAGCGGTTTAGTTTTGGGAGGCGGGTCTAGTTG
TGACTCTCCGCGTCGTTCGGTGCGCCCTTCTGTCGCGAGATGACTCATTT
GGGACGGCGCAGTTTTGCACGGACTCACAGTGATGGGCAAGACGCATTCG
AGATTGCTAAACAATAAAAATGATTCTGAGTTCCTCCTCACGCCGTCTGA
GCGCACGCGGGAGTAACGATTCTGCGTCGCAGTATAGCCTGAAGCAACTC
ACTTGACGTCACGCGAGGGCTCTTCGGATATCGGTTCTATTTAATACAGT
AAGAAAAAACACTCGATGTGCTAGAGCGTTTGCCATAAATTTCCAATAAA
AAAAAAGTATTTTTCCCAACGAACACATCATGCGCGCGCGAAGGCTCTGG
CTTTGTTTCGCTTGTGGAAACGCTTGGAGACGGGGGTAGACGTTTTCGTT
TAATTTCGTGCTTTATTTGGGAAAAATCGCTCCAAAATTCCCCCTGACCG
CTTTTTCGCGTTTGGCTGGCGTGTGCCAGATCTGGAACACGAAGGACAAG
AGGAAGATGAAGGCGGACACTGTCAGGCAAGGCAGCCCGGTGACGTGCGT
CTCGTTTCTCGAGAGCGAGGCTCGCGTGGCGGCGGGCGACGTTGGCGGCA
GAGTGCTGGTGCACCGCCTGAAAGGCCTGGCCGACGAGGACGAGGTGCGG
CGGATGGAGAGAATCGATCGATTTGGATCAGGCAAAGTGGCGGCGGCGTC
TCGCCACTTGCCGCGTCGATCGAGAGGAAGAAAGGGTGTACGTAGGTGAT
GAAACCTACCCTAGTGAATGTTGTATATACTATAAACTATCACTATATAG
CAGTATGGTGACACACCCAGGGGATATTATAGAAATTTACCCTCCCATCT
CCCCCTTCATTATCTCGACAACACAACACCAGCAGAGAGATGCCTAATAT
GCACACACCTGGTCTGCACGTGAAATTTTTCACATCTGGCAAAGCAAACT
TTCGCTAGCCACAAAATATGGCAACTACTTATTGTCCATCGTGAAGTAAG
ATTCCGAACCTAGGACTGCGCACCCAGGACTCCCCCTCGCGGGAGCTGGG
GTCTATGAATATGGGTTAGGG
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Coding sequence (CDS) from alignment at H-elongata_contig842:14539..18459+

>mRNA_H-elongata_contig842.16038.1 ID=mRNA_H-elongata_contig842.16038.1|Name=mRNA_H-elongata_contig842.16038.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=726bp|location=Sequence derived from alignment at H-elongata_contig842:14539..18459+ (Himanthalia elongata Himel1 dioecious)
ATGTCGAGCGCATCCGAGATGTCGAGCGCATCCGAGCGCCCGATCCGAGC
CATCGCGCTCAGCCCCGGAGCACAAAGGGTGGCGGCCGCGGGGGATGCCG
GTGACATAGAGCGCCCGATCCGAGCCATCGCGCTCAGCCCCGGAGCACAA
AGGGTGGCGGCCGCGGGGGATGCCGGTGACATAGAGATCTGGAACACGAA
GGACAAGAGGAAGATGAAGGCGGACACTGTCAGGCAAGGCAGCCCGGTGA
CGTGCGTCTCGTTTCTCGAGAGCGAGGCTCGCGTGGCGGCGGGCGACGTT
GGCGGCAGAGTGCTGGTGCACCGCCTGAAAGGCCTGGCCGACGAGGACGA
GGTGCGGCGGATGGAGAGAATCGATCGATTTGGATCAGGCAAAGTGGCGG
CGGCGTCTCGCCACTTGCCGCGTCGATCGAGAGGAAGAAAGGGTGTACGT
AGGTGAATCTGGAACACGAAGGACAAGAGGAAGATGAAGGCGGACACTGT
CAGGCAAGGCAGCCCGGTGACGTGCGTCTCGTTTCTCGAGAGCGAGGCTC
GCGTGGCGGCGGGCGACGTTGGCGGCAGAGTGCTGGTGCACCGCCTGAAA
GGCCTGGCCGACGAGGACGAGGTGCGGCGGATGGAGAGAATCGATCGATT
TGGATCAGGCAAAGTGGCGGCGGCGTCTCGCCACTTGCCGCGTCGATCGA
GAGGAAGAAAGGGTGTACGTAGGTGA
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