mRNA_H-elongata_contig84188.16036.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig84188.16036.1
Unique NamemRNA_H-elongata_contig84188.16036.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig84188.16036.1 vs. uniprot
Match: A0A7S0QH02_9CRYP (Alanine--tRNA ligase (Fragment) n=1 Tax=Cryptomonas curvata TaxID=233186 RepID=A0A7S0QH02_9CRYP)

HSP 1 Score: 123 bits (308), Expect = 3.670e-34
Identity = 53/59 (89.83%), Postives = 56/59 (94.92%), Query Frame = 1 
Query:    1 MNQFKPIFLGQTDPASPLAALRRVVNSQKCIRAGGKHNDLEDVGKDVYHHTFFEMLGTW 177
            MNQFKPIFLGQ DP+SP+A+LRR VNSQKCIRAGGKHNDLEDVGKD YHHTFFEMLGTW
Sbjct:   54 MNQFKPIFLGQIDPSSPMASLRRAVNSQKCIRAGGKHNDLEDVGKDTYHHTFFEMLGTW 112
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BLAST of mRNA_H-elongata_contig84188.16036.1 vs. uniprot
Match: A0A834FHM7_ORYME (Alanine--tRNA ligase n=2 Tax=Oryzias melastigma TaxID=30732 RepID=A0A834FHM7_ORYME)

HSP 1 Score: 119 bits (297), Expect = 1.790e-32
Identity = 50/59 (84.75%), Postives = 54/59 (91.53%), Query Frame = 1 
Query:    1 MNQFKPIFLGQTDPASPLAALRRVVNSQKCIRAGGKHNDLEDVGKDVYHHTFFEMLGTW 177
            MNQFKP+FLG  DP SP+AA RRVVNSQKC+RAGGKHNDLEDVG+DVYHHTFFEMLG W
Sbjct:   76 MNQFKPVFLGTVDPRSPMAAYRRVVNSQKCVRAGGKHNDLEDVGRDVYHHTFFEMLGNW 134
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BLAST of mRNA_H-elongata_contig84188.16036.1 vs. uniprot
Match: A0A7S3XMY7_HETAK (Alanine--tRNA ligase (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XMY7_HETAK)

HSP 1 Score: 124 bits (310), Expect = 1.580e-31
Identity = 53/59 (89.83%), Postives = 57/59 (96.61%), Query Frame = 1 
Query:    1 MNQFKPIFLGQTDPASPLAALRRVVNSQKCIRAGGKHNDLEDVGKDVYHHTFFEMLGTW 177
            MNQFKPIFLGQTDP+SPLAAL+R VN+QKCIRAGGKHNDLEDVG+D YHHTFFEMLGTW
Sbjct:  107 MNQFKPIFLGQTDPSSPLAALKRAVNTQKCIRAGGKHNDLEDVGRDTYHHTFFEMLGTW 165
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BLAST of mRNA_H-elongata_contig84188.16036.1 vs. uniprot
Match: A0A086QSX5_TOXGO (Alanine--tRNA ligase (Fragment) n=1 Tax=Toxoplasma gondii MAS TaxID=943118 RepID=A0A086QSX5_TOXGO)

HSP 1 Score: 115 bits (287), Expect = 2.000e-31
Identity = 50/59 (84.75%), Postives = 54/59 (91.53%), Query Frame = 1 
Query:    1 MNQFKPIFLGQTDPASPLAALRRVVNSQKCIRAGGKHNDLEDVGKDVYHHTFFEMLGTW 177
            MNQFKPIFLGQ D +SPL+ LRRV ++QKCIRAGGKHNDLEDVGKDVYHHTFFEMLG W
Sbjct:   65 MNQFKPIFLGQIDRSSPLSKLRRVADTQKCIRAGGKHNDLEDVGKDVYHHTFFEMLGNW 123
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BLAST of mRNA_H-elongata_contig84188.16036.1 vs. uniprot
Match: D8LCV6_ECTSI (Alanine--tRNA ligase n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LCV6_ECTSI)

HSP 1 Score: 123 bits (309), Expect = 2.160e-31
Identity = 52/59 (88.14%), Postives = 57/59 (96.61%), Query Frame = 1 
Query:    1 MNQFKPIFLGQTDPASPLAALRRVVNSQKCIRAGGKHNDLEDVGKDVYHHTFFEMLGTW 177
            MNQFKP+FLGQTDP+SPLA L+R VNSQKCIRAGGKHNDL+DVG+DVYHHTFFEMLGTW
Sbjct:  194 MNQFKPVFLGQTDPSSPLAGLKRAVNSQKCIRAGGKHNDLDDVGRDVYHHTFFEMLGTW 252
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BLAST of mRNA_H-elongata_contig84188.16036.1 vs. uniprot
Match: A0A7S0SRE6_9STRA (Alanine--tRNA ligase (Fragment) n=1 Tax=Chromulina nebulosa TaxID=96789 RepID=A0A7S0SRE6_9STRA)

HSP 1 Score: 119 bits (298), Expect = 2.380e-31
Identity = 51/59 (86.44%), Postives = 54/59 (91.53%), Query Frame = 1 
Query:    1 MNQFKPIFLGQTDPASPLAALRRVVNSQKCIRAGGKHNDLEDVGKDVYHHTFFEMLGTW 177
            MNQFKPIF+G  DP+SPLA L+R VNSQKCIRAGGKHNDLEDVGKD YHHTFFEMLGTW
Sbjct:   68 MNQFKPIFIGTVDPSSPLAELKRAVNSQKCIRAGGKHNDLEDVGKDTYHHTFFEMLGTW 126
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BLAST of mRNA_H-elongata_contig84188.16036.1 vs. uniprot
Match: A0A7R9U3E4_9STRA (Alanine--tRNA ligase (Fragment) n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9U3E4_9STRA)

HSP 1 Score: 115 bits (287), Expect = 3.040e-31
Identity = 49/59 (83.05%), Postives = 53/59 (89.83%), Query Frame = 1 
Query:    1 MNQFKPIFLGQTDPASPLAALRRVVNSQKCIRAGGKHNDLEDVGKDVYHHTFFEMLGTW 177
            MNQFKPIF+G+ DP+SPLA L R VNSQKCIRAGGKHNDL+DVG D YHHTFFEMLGTW
Sbjct:   18 MNQFKPIFVGKVDPSSPLAKLERAVNSQKCIRAGGKHNDLDDVGLDTYHHTFFEMLGTW 76
[Close]
BLAST of mRNA_H-elongata_contig84188.16036.1 vs. uniprot
Match: A0A7S0HEE2_9CRYP (Alanine--tRNA ligase (Fragment) n=1 Tax=Hanusia phi TaxID=3032 RepID=A0A7S0HEE2_9CRYP)

HSP 1 Score: 115 bits (289), Expect = 4.090e-31
Identity = 49/59 (83.05%), Postives = 54/59 (91.53%), Query Frame = 1 
Query:    1 MNQFKPIFLGQTDPASPLAALRRVVNSQKCIRAGGKHNDLEDVGKDVYHHTFFEMLGTW 177
            MNQFKPIFLGQ DP S +A+L+R VN+QKCIRAGGKHNDL+DVGKD YHHTFFEMLGTW
Sbjct:   71 MNQFKPIFLGQADPNSKMASLKRAVNTQKCIRAGGKHNDLDDVGKDTYHHTFFEMLGTW 129
[Close]
BLAST of mRNA_H-elongata_contig84188.16036.1 vs. uniprot
Match: UPI00155EC04F (alanine--tRNA ligase, mitochondrial-like n=1 Tax=Etheostoma cragini TaxID=417921 RepID=UPI00155EC04F)

HSP 1 Score: 113 bits (283), Expect = 6.270e-31
Identity = 48/59 (81.36%), Postives = 54/59 (91.53%), Query Frame = 1 
Query:    1 MNQFKPIFLGQTDPASPLAALRRVVNSQKCIRAGGKHNDLEDVGKDVYHHTFFEMLGTW 177
            MNQFKPIFLG+ DP S +A+ RRVVNSQKC+RAGGKHNDLEDVG+D+YH TFFEMLGTW
Sbjct:   77 MNQFKPIFLGRADPRSEMASYRRVVNSQKCVRAGGKHNDLEDVGRDLYHQTFFEMLGTW 135
[Close]
BLAST of mRNA_H-elongata_contig84188.16036.1 vs. uniprot
Match: A0A482S8J8_9ARCH (Alanine--tRNA ligase n=1 Tax=archaeon TaxID=1906665 RepID=A0A482S8J8_9ARCH)

HSP 1 Score: 117 bits (294), Expect = 7.090e-31
Identity = 51/59 (86.44%), Postives = 54/59 (91.53%), Query Frame = 1 
Query:    1 MNQFKPIFLGQTDPASPLAALRRVVNSQKCIRAGGKHNDLEDVGKDVYHHTFFEMLGTW 177
            MNQFKPIFLG  DP+S LA+L+RV NSQKCIRAGGKHNDLEDVGKD YHHTFFEMLGTW
Sbjct:   50 MNQFKPIFLGTVDPSSSLASLKRVANSQKCIRAGGKHNDLEDVGKDTYHHTFFEMLGTW 108
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig84188.16036.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7S0QH02_9CRYP3.670e-3489.83Alanine--tRNA ligase (Fragment) n=1 Tax=Cryptomona... [more]
A0A834FHM7_ORYME1.790e-3284.75Alanine--tRNA ligase n=2 Tax=Oryzias melastigma Ta... [more]
A0A7S3XMY7_HETAK1.580e-3189.83Alanine--tRNA ligase (Fragment) n=1 Tax=Heterosigm... [more]
A0A086QSX5_TOXGO2.000e-3184.75Alanine--tRNA ligase (Fragment) n=1 Tax=Toxoplasma... [more]
D8LCV6_ECTSI2.160e-3188.14Alanine--tRNA ligase n=2 Tax=Ectocarpus TaxID=2879... [more]
A0A7S0SRE6_9STRA2.380e-3186.44Alanine--tRNA ligase (Fragment) n=1 Tax=Chromulina... [more]
A0A7R9U3E4_9STRA3.040e-3183.05Alanine--tRNA ligase (Fragment) n=1 Tax=Pinguiococ... [more]
A0A7S0HEE2_9CRYP4.090e-3183.05Alanine--tRNA ligase (Fragment) n=1 Tax=Hanusia ph... [more]
UPI00155EC04F6.270e-3181.36alanine--tRNA ligase, mitochondrial-like n=1 Tax=E... [more]
A0A482S8J8_9ARCH7.090e-3186.44Alanine--tRNA ligase n=1 Tax=archaeon TaxID=190666... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig84188contigH-elongata_contig84188:2068..2247 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score122.9
Seed ortholog evalue5.2e-26
Seed eggNOG ortholog2880.D8LCV6
KEGG rclassRC00055,RC00523
KEGG koko:K01872
KEGG ReactionR03038
KEGG Pathwayko00970,map00970
KEGG ModuleM00359,M00360
EggNOG free text desc.alanyl-tRNA aminoacylation
EggNOG OGsCOG0013@1,KOG0188@2759
EC6.1.1.7
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko01007,ko03016
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size180
Cds size180
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931247.3728724-CDS-H-elongata_contig84188:2067..22471622931247.3728724-CDS-H-elongata_contig84188:2067..2247Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig84188 2068..2247 -
1691679758.492212-CDS-H-elongata_contig84188:2067..22471691679758.492212-CDS-H-elongata_contig84188:2067..2247Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig84188 2068..2247 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig84188.16036.1prot_H-elongata_contig84188.16036.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig84188 2068..2247 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig84188.16036.1

>prot_H-elongata_contig84188.16036.1 ID=prot_H-elongata_contig84188.16036.1|Name=mRNA_H-elongata_contig84188.16036.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=60bp
MNQFKPIFLGQTDPASPLAALRRVVNSQKCIRAGGKHNDLEDVGKDVYHH
TFFEMLGTW*
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mRNA from alignment at H-elongata_contig84188:2068..2247-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig84188.16036.1 ID=mRNA_H-elongata_contig84188.16036.1|Name=mRNA_H-elongata_contig84188.16036.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=180bp|location=Sequence derived from alignment at H-elongata_contig84188:2068..2247- (Himanthalia elongata Himel1 dioecious)
ATGAATCAGTTCAAGCCGATATTCTTGGGCCAGACTGACCCGGCGAGCCC
TCTAGCGGCCCTCCGGAGGGTCGTCAACAGCCAGAAGTGCATCAGGGCCG
GGGGCAAGCACAACGACCTCGAGGACGTGGGCAAGGACGTGTACCACCAC
ACTTTCTTTGAAATGCTGGGCACTTGGTGA
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Coding sequence (CDS) from alignment at H-elongata_contig84188:2068..2247-

>mRNA_H-elongata_contig84188.16036.1 ID=mRNA_H-elongata_contig84188.16036.1|Name=mRNA_H-elongata_contig84188.16036.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=360bp|location=Sequence derived from alignment at H-elongata_contig84188:2068..2247- (Himanthalia elongata Himel1 dioecious)
ATGAATCAGTTCAAGCCGATATTCTTGGGCCAGACTGACCCGGCGAGCCC
TCTAGCGGCCCTCCGGAGGGTCGTCAACAGCCAGAAGTGCATCAGGGCCG
GGGGCAAGCACAACGACCTCGAGGACGTGGGCAAGGACGTGTACCACCAC
ACTTTCTTTGAAATGCTGGGCACTTGGTGAATGAATCAGTTCAAGCCGAT
ATTCTTGGGCCAGACTGACCCGGCGAGCCCTCTAGCGGCCCTCCGGAGGG
TCGTCAACAGCCAGAAGTGCATCAGGGCCGGGGGCAAGCACAACGACCTC
GAGGACGTGGGCAAGGACGTGTACCACCACACTTTCTTTGAAATGCTGGG
CACTTGGTGA
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