mRNA_H-elongata_contig84185.16034.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig84185.16034.1
Unique NamemRNA_H-elongata_contig84185.16034.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig84185.16034.1 vs. uniprot
Match: A0A6H5KK66_9PHAE (Imidazole acetol-phosphate transaminase n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KK66_9PHAE)

HSP 1 Score: 132 bits (331), Expect = 5.130e-35
Identity = 64/86 (74.42%), Postives = 75/86 (87.21%), Query Frame = 1
Query:    4 ERTRLQIILRSFDFVREVKESEANFVLVQMDNAFEVYKRMAENGIVVRFRGNALHCKDCLRITVGTPEENNRLLELLKETVAAVSA 261
            ER RLQ  LR + FV+EVKES+ANF LVQ+D+A E+YKRMA NG+VVRFRGN LHCKDCLR+TVGT EENNRLLELL++TVA +SA
Sbjct:  314 ERIRLQEALRRYSFVKEVKESDANFFLVQVDHAQEIYKRMANNGVVVRFRGNELHCKDCLRVTVGTAEENNRLLELLEKTVATISA 399          
BLAST of mRNA_H-elongata_contig84185.16034.1 vs. uniprot
Match: A0A836C9P4_9STRA (Imidazole acetol-phosphate transaminase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C9P4_9STRA)

HSP 1 Score: 101 bits (252), Expect = 1.620e-23
Identity = 50/85 (58.82%), Postives = 64/85 (75.29%), Query Frame = 1
Query:    1 QERTRLQIILRSFDFVREVKESEANFVLVQMDNAFEVYKRMAENGIVVRFRGNALHCKDCLRITVGTPEENNRLLELLKETVAAV 255
            ++R +L   LR+  +VR V  S+ANF LV++++A  +Y  MAENG+VVRFRGN LHC DCLRITVGT EEN +LLELL+ TV  V
Sbjct:  321 EQRDKLMETLRNEPYVRRVLPSDANFFLVEIEHAHTIYLHMAENGVVVRFRGNELHCTDCLRITVGTAEENAKLLELLRATVKGV 405          
BLAST of mRNA_H-elongata_contig84185.16034.1 vs. uniprot
Match: A0A6V1XHV7_HETAK (Imidazole acetol-phosphate transaminase n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1XHV7_HETAK)

HSP 1 Score: 97.1 bits (240), Expect = 6.530e-22
Identity = 48/87 (55.17%), Postives = 62/87 (71.26%), Query Frame = 1
Query:    4 ERTRLQIILRSFDFVREVKESEANFVLVQMDNAFEVYKRMAENGIVVRFRGNALHCKDCLRITVGTPEENNRLLELLKETVAAVSAA 264
            ER R+   L +   V +V  S+ANFVL Q+D+A  +YK MAENG VVRFRGN LHC DC+R TVGT EEN+++LE+L+ T A  + A
Sbjct:  298 ERARVMAALEAMPAVHKVHPSDANFVLFQIDHAQAIYKDMAENGCVVRFRGNELHCTDCIRATVGTAEENDKMLEMLEATHAKFATA 384          
BLAST of mRNA_H-elongata_contig84185.16034.1 vs. uniprot
Match: UPI0009E5AE7C (uncharacterized protein LOC110054690 n=1 Tax=Orbicella faveolata TaxID=48498 RepID=UPI0009E5AE7C)

HSP 1 Score: 91.3 bits (225), Expect = 1.300e-21
Identity = 40/77 (51.95%), Postives = 63/77 (81.82%), Query Frame = 1
Query:   28 LRSFDFVREVKESEANFVLVQMDNAFEVYKRMA-ENGIVVRFRGNALHCKDCLRITVGTPEENNRLLELLKETVAAV 255
            L+    VR++  S++NF+L+++D+A ++YK+MA E G+V+R++GN +HCKDC+RITVGTPE+N  LL+ LK+TVA +
Sbjct:   57 LKKLPTVRKIFPSDSNFILLRIDHAQKIYKKMASEKGVVIRYQGNKIHCKDCVRITVGTPEQNRVLLDTLKKTVAEI 133          
BLAST of mRNA_H-elongata_contig84185.16034.1 vs. uniprot
Match: A0A0L0FHM3_9EUKA (Imidazole acetol-phosphate transaminase n=1 Tax=Sphaeroforma arctica JP610 TaxID=667725 RepID=A0A0L0FHM3_9EUKA)

HSP 1 Score: 93.6 bits (231), Expect = 9.190e-21
Identity = 39/77 (50.65%), Postives = 61/77 (79.22%), Query Frame = 1
Query:   28 LRSFDFVREVKESEANFVLVQMDNAFEVYKRMAENGIVVRFRGNALHCKDCLRITVGTPEENNRLLELLKETVAAVS 258
            L+  + VR++  ++ANF+LVQ+D++ EVYKRMA+ G+V+R+RG+  HC DC+RIT+GT +EN ++L LL+E  A +S
Sbjct:  280 LQQMETVRKIHPTDANFLLVQIDHSLEVYKRMADRGVVIRYRGDQTHCDDCVRITIGTADENEKMLSLLREIAAELS 356          
BLAST of mRNA_H-elongata_contig84185.16034.1 vs. uniprot
Match: A0A6C1P946_9BACT (Histidinol-phosphate aminotransferase n=1 Tax=Balneolaceae bacterium TaxID=2053516 RepID=A0A6C1P946_9BACT)

HSP 1 Score: 93.6 bits (231), Expect = 9.680e-21
Identity = 43/81 (53.09%), Postives = 63/81 (77.78%), Query Frame = 1
Query:    4 ERTRLQIILRSFDFVREVKESEANFVLVQMDNAFEVYKRMAENGIVVRFRGNALHCKDCLRITVGTPEENNRLLELLKETV 246
            ERTRL   L   + ++++  S+ANF+LV+M+NA +VY+R+A  GI+VR+RG+ LHC +CLRITVGTP+ENN L+  L+E +
Sbjct:  280 ERTRLAESLAQINGIQKIFPSDANFLLVRMNNALDVYRRLAGMGIIVRYRGDQLHCDNCLRITVGTPDENNTLISALREVL 360          
BLAST of mRNA_H-elongata_contig84185.16034.1 vs. uniprot
Match: A0A3M6TIJ9_POCDA (Imidazole acetol-phosphate transaminase n=2 Tax=Pocillopora damicornis TaxID=46731 RepID=A0A3M6TIJ9_POCDA)

HSP 1 Score: 92.8 bits (229), Expect = 2.700e-20
Identity = 41/81 (50.62%), Postives = 64/81 (79.01%), Query Frame = 1
Query:   28 LRSFDFVREVKESEANFVLVQMDNAFEVYKRMA-ENGIVVRFRGNALHCKDCLRITVGTPEENNRLLELLKETVAAVSAAP 267
            L     VR++  S++NFV +++D+A+E+YK+MA E G+V+R++G+ +HCKDC+RITVGT EEN+ LL+ LK+T+A +  AP
Sbjct:  320 LEKIPTVRKIFPSDSNFVFLRIDHAYEIYKKMASEKGVVIRYQGSKVHCKDCVRITVGTSEENDELLKTLKKTIAELDEAP 400          
BLAST of mRNA_H-elongata_contig84185.16034.1 vs. uniprot
Match: A0A1V9ZWB1_9STRA (Imidazole acetol-phosphate transaminase n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1V9ZWB1_9STRA)

HSP 1 Score: 90.9 bits (224), Expect = 1.400e-19
Identity = 41/70 (58.57%), Postives = 56/70 (80.00%), Query Frame = 1
Query:   28 LRSFDFVREVKESEANFVLVQMDNAFEVYKRMAENGIVVRFRGNALHCKDCLRITVGTPEENNRLLELLK 237
            L++F FV++V  S++NFVL Q  NAF+VYK MAE+G+V+R+RGN L   DCLR T+GTPEEN ++LEL +
Sbjct:  330 LQAFPFVQKVYASDSNFVLFQCSNAFKVYKEMAESGVVIRYRGNQLLLDDCLRATIGTPEENQKMLELFE 399          
BLAST of mRNA_H-elongata_contig84185.16034.1 vs. uniprot
Match: A0A521BXL3_9BACT (Histidinol-phosphate aminotransferase n=1 Tax=Aliifodinibius sediminis TaxID=1214077 RepID=A0A521BXL3_9BACT)

HSP 1 Score: 88.2 bits (217), Expect = 9.360e-19
Identity = 41/80 (51.25%), Postives = 60/80 (75.00%), Query Frame = 1
Query:    1 QERTRLQIILRSFDFVREVKESEANFVLVQMDNAFEVYKRMAENGIVVRFRGNALHCKDCLRITVGTPEENNRLLELLKE 240
            ++R+ L+  L     VR +  SEANF+LV++D+A ++Y+++A+ GI+VR+RGN  HC D LRITVGTPEEN RL+  LK+
Sbjct:  276 KQRSTLRQQLEQIAIVRHIYPSEANFLLVRVDHARKIYQKLADRGIIVRYRGNEPHCDDTLRITVGTPEENERLISALKQ 355          
BLAST of mRNA_H-elongata_contig84185.16034.1 vs. uniprot
Match: A0A1V9YIJ6_9STRA (Imidazole acetol-phosphate transaminase n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9YIJ6_9STRA)

HSP 1 Score: 88.6 bits (218), Expect = 9.730e-19
Identity = 42/79 (53.16%), Postives = 58/79 (73.42%), Query Frame = 1
Query:    4 ERTRLQIILRSFDFVREVKESEANFVLVQMDNAFEVYKRMAENGIVVRFRGNALHCKDCLRITVGTPEENNRLLELLKE 240
            E+TR+   L++  FV++V  S+ANFVL +  NAF VYK MAE G+V+R+RGN L   DCLR T+G+P+EN+R+L L  E
Sbjct:  323 EKTRVIAALQALPFVQQVYASDANFVLFKCSNAFRVYKEMAEAGVVIRYRGNQLLLDDCLRATIGSPDENDRMLALFAE 401          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig84185.16034.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KK66_9PHAE5.130e-3574.42Imidazole acetol-phosphate transaminase n=2 Tax=Ec... [more]
A0A836C9P4_9STRA1.620e-2358.82Imidazole acetol-phosphate transaminase n=1 Tax=Tr... [more]
A0A6V1XHV7_HETAK6.530e-2255.17Imidazole acetol-phosphate transaminase n=1 Tax=He... [more]
UPI0009E5AE7C1.300e-2151.95uncharacterized protein LOC110054690 n=1 Tax=Orbic... [more]
A0A0L0FHM3_9EUKA9.190e-2150.65Imidazole acetol-phosphate transaminase n=1 Tax=Sp... [more]
A0A6C1P946_9BACT9.680e-2153.09Histidinol-phosphate aminotransferase n=1 Tax=Baln... [more]
A0A3M6TIJ9_POCDA2.700e-2050.62Imidazole acetol-phosphate transaminase n=2 Tax=Po... [more]
A0A1V9ZWB1_9STRA1.400e-1958.57Imidazole acetol-phosphate transaminase n=1 Tax=Th... [more]
A0A521BXL3_9BACT9.360e-1951.25Histidinol-phosphate aminotransferase n=1 Tax=Alii... [more]
A0A1V9YIJ6_9STRA9.730e-1953.16Imidazole acetol-phosphate transaminase n=1 Tax=Ac... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig84185contigH-elongata_contig84185:329..883 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score132.5
Seed ortholog evalue9.9e-29
Seed eggNOG ortholog2880.D7FPJ8
Preferred nameHIS5
KEGG rclassRC00006,RC00888,RC00945
KEGG koko:K00817,ko:K01814
KEGG ReactionR00694,R00734,R03243,R04640
KEGG Pathwayko00340,ko00350,ko00360,ko00400,ko00401,ko00960,ko01100,ko01110,ko01130,ko01230,map00340,map00350,map00360,map00400,map00401,map00960,map01100,map01110,map01130,map01230
KEGG ModuleM00026
GOsGO:0000105,GO:0003674,GO:0003824,GO:0004400,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006082,GO:0006520,GO:0006547,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008483,GO:0008652,GO:0009058,GO:0009507,GO:0009532,GO:0009536,GO:0009570,GO:0009987,GO:0010035,GO:0010038,GO:0010045,GO:0016053,GO:0016740,GO:0016769,GO:0018130,GO:0019438,GO:0019752,GO:0034641,GO:0042221,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044281,GO:0044283,GO:0044422,GO:0044424,GO:0044434,GO:0044435,GO:0044444,GO:0044446,GO:0044464,GO:0046394,GO:0046483,GO:0050896,GO:0052803,GO:0071704,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607
EggNOG free text desc.histidinol-phosphate transaminase activity
EggNOG OGsCOG0079@1,KOG0633@2759
EC2.6.1.9,5.3.1.16
COG Functional cat.E
BiGG ReactioniMM904.YIL116W,iND750.YIL116W
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko01007
Hectar predicted targeting categoryother localisation
Exons2
Model size270
Cds size270
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931247.234303-CDS-H-elongata_contig84185:328..4181622931247.234303-CDS-H-elongata_contig84185:328..418Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig84185 329..418 +
1691679758.4421225-CDS-H-elongata_contig84185:328..4181691679758.4421225-CDS-H-elongata_contig84185:328..418Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig84185 329..418 +
1622931247.2573268-CDS-H-elongata_contig84185:703..8831622931247.2573268-CDS-H-elongata_contig84185:703..883Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig84185 704..883 +
1691679758.4584963-CDS-H-elongata_contig84185:703..8831691679758.4584963-CDS-H-elongata_contig84185:703..883Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig84185 704..883 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig84185.16034.1prot_H-elongata_contig84185.16034.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig84185 329..883 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig84185.16034.1

>prot_H-elongata_contig84185.16034.1 ID=prot_H-elongata_contig84185.16034.1|Name=mRNA_H-elongata_contig84185.16034.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=90bp
QERTRLQIILRSFDFVREVKESEANFVLVQMDNAFEVYKRMAENGIVVRF
RGNALHCKDCLRITVGTPEENNRLLELLKETVAAVSAAP*
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mRNA from alignment at H-elongata_contig84185:329..883+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig84185.16034.1 ID=mRNA_H-elongata_contig84185.16034.1|Name=mRNA_H-elongata_contig84185.16034.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=555bp|location=Sequence derived from alignment at H-elongata_contig84185:329..883+ (Himanthalia elongata Himel1 dioecious)
CAGGAGCGCACGAGATTGCAGATAATACTGCGGAGCTTCGACTTTGTTCG AGAGGTGAAGGAATCTGAGGCCAACTTCGTCCTCGTTCAGGTAAGATATA TTCAAAGTACTGTCAAAAGAGTTTTACCTGACATGAACTTCGAGATGACA TAACAAAGGCCTATTTATCTGGCATCATCAGAGATCGCCTACACAAACAC CCCAGTATCTCTCCGAGCATCGTCTGTGTAGCTTGCTACCTAATCGTTTT CATCTCGTCAACGCCGATATAAACAAAGGACGTATGTGGATATAAAATGT CGTCGATATTCTCGCACTGGGTGATGTTTTGTCTTTTTGTTTCGCCCATA TTTCCCAAAAACGTCGTTACCCAAGATGGACAACGCGTTTGAAGTATACA AGCGAATGGCGGAAAATGGAATCGTCGTCAGATTCCGGGGGAACGCACTA CACTGCAAGGACTGTCTTCGGATAACGGTTGGGACGCCGGAAGAAAATAA CCGCCTTCTAGAACTTCTCAAGGAGACAGTCGCGGCTGTTTCGGCTGCGC CATAG
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Coding sequence (CDS) from alignment at H-elongata_contig84185:329..883+

>mRNA_H-elongata_contig84185.16034.1 ID=mRNA_H-elongata_contig84185.16034.1|Name=mRNA_H-elongata_contig84185.16034.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=540bp|location=Sequence derived from alignment at H-elongata_contig84185:329..883+ (Himanthalia elongata Himel1 dioecious)
CAGGAGCGCACGAGATTGCAGATAATACTGCGGAGCTTCGACTTTGTTCG
AGAGGTGAAGGAATCTGAGGCCAACTTCGTCCTCGTTCAGCAGGAGCGCA
CGAGATTGCAGATAATACTGCGGAGCTTCGACTTTGTTCGAGAGGTGAAG
GAATCTGAGGCCAACTTCGTCCTCGTTCAGATGGACAACGCGTTTGAAGT
ATACAAGCGAATGGCGGAAAATGGAATCGTCGTCAGATTCCGGGGGAACG
CACTACACTGCAAGGACTGTCTTCGGATAACGGTTGGGACGCCGGAAGAA
AATAACCGCCTTCTAGAACTTCTCAAGGAGACAGTCGCGGCTGTTTCGGC
TGCGCCATAGATGGACAACGCGTTTGAAGTATACAAGCGAATGGCGGAAA
ATGGAATCGTCGTCAGATTCCGGGGGAACGCACTACACTGCAAGGACTGT
CTTCGGATAACGGTTGGGACGCCGGAAGAAAATAACCGCCTTCTAGAACT
TCTCAAGGAGACAGTCGCGGCTGTTTCGGCTGCGCCATAG
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