mRNA_H-elongata_contig84174.16031.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig84174.16031.1 vs. uniprot
Match: D8LAY6_ECTSI (Nephroretinin 4 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LAY6_ECTSI) HSP 1 Score: 360 bits (925), Expect = 1.460e-111 Identity = 173/212 (81.60%), Postives = 194/212 (91.51%), Query Frame = 1
Query: 1 VYDDQYQGSLCEIWHVVVQARLRMDVHALLGQQSPTDLIVRGDRYSRKVRAFSSAPAEVAFEPDSTFQLVPGAYNRVEMRFQPLSIGSRRIHVHIVDVESMEIVGAWLATATAMPPVVTKSYEVDLPLGRACHKRIAYSNSWSSTKLFRLASSNPSILRPRYESLEVAGNGTGYFRLWFAALGEISTRKEAFLFVNDIKGQSEECLLIRVRG 636
VYDD YQGSL E WHV+VQARLRMDVH+LLGQQSP DLIVRGDRYSRKVRAFSS PAEV+FEP + FQLVPGAYNRVE+RF+PLS GSR+IHVH+VDV+SMEIVGAWLATATAMPPV+TKSY+V+LPLGRACHKRIAYSN W++T+LFRLASS+P ILRPRYESLEVAG GTG+ RLWFAA G + RKEAFLFVND +GQ+EECLLI +RG
Sbjct: 2829 VYDDHYQGSLYETWHVIVQARLRMDVHSLLGQQSPADLIVRGDRYSRKVRAFSSCPAEVSFEPANAFQLVPGAYNRVELRFRPLSTGSRKIHVHLVDVDSMEIVGAWLATATAMPPVITKSYDVELPLGRACHKRIAYSNPWNTTRLFRLASSDPRILRPRYESLEVAGGGTGFLRLWFAAPGGTNVRKEAFLFVNDSEGQNEECLLICMRG 3040
BLAST of mRNA_H-elongata_contig84174.16031.1 vs. uniprot
Match: A0A836CDE8_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CDE8_9STRA) HSP 1 Score: 234 bits (596), Expect = 5.860e-75 Identity = 117/211 (55.45%), Postives = 151/211 (71.56%), Query Frame = 1
Query: 1 VYDDQYQGSLCEIWHVVVQARLRMDVHALLGQQSPTDLIVRGDRYSRKVRAFSSAPAEVAFEPDSTFQLVPGAYNRVEMRFQPLSIGSRRIHVHIVDVESMEIVGAWLATATAMPPVVTKSYEVDLPLGRACHKRIAYSNSWSSTKLFRLASSNPSILRPRYESLEVAGNGTGYFRLWFAALGEISTRKEAFLFVNDIKGQSEECLLIRVR 633
++DD+ + L EIWHV+V +RLR+DVHA LGQ S +L+VRGDRYSR+VR FSSAP + F+P +TFQLV GAYNRV H+VDV++ E+VGAWLATATA+PPVVTK+ E+DLP+G+ HKRIAY+N WS + FRL SS+ +++ PR+ LE A GTG+ RLW A + + E FLFVND Q+EECLLIR+R
Sbjct: 13 LHDDRDRTRLYEIWHVMVHSRLRLDVHATLGQASAANLVVRGDRYSRRVRCFSSAPGDCEFDPPTTFQLVSGAYNRV----------------HMVDVDTQELVGAWLATATALPPVVTKTNELDLPVGKESHKRIAYANPWSQARAFRLRSSDETVMAPRHGGLEAAAGGTGFIRLWLHA-PDAAGSAEVFLFVNDENDQNEECLLIRMR 206
BLAST of mRNA_H-elongata_contig84174.16031.1 vs. uniprot
Match: A0A835YU49_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YU49_9STRA) HSP 1 Score: 241 bits (614), Expect = 9.370e-70 Identity = 121/226 (53.54%), Postives = 156/226 (69.03%), Query Frame = 1
Query: 1 VYDDQYQGSLCEIWHVVVQARLRMDVHALLGQQSPTDLIVRGDRYSRKVRAFSSAPAEVAFEPDSTFQLVPGAYNRVEMRFQPLSIGSRRIHVHIVDVESMEIVGAWLATATAMPPVVTKSYEVDLPLGRACHKRIAYSNSWSSTKLFRLASSNPSILRPRYESLE----------------------VAGNGTGYFRLWFAALGEISTRKEAFLFVNDIKGQSEE 612
+YDD+ + L EIWHV+V +RLR+DVHA LGQ S DL+VRGDRYSR+VR F+SAPA+ F+P STFQLV GAYNRV+MR++P G +I VH+VDV++ E+VGAWLATATA+PPVVTK+YE+DLP+G+ HKRIAY+N W + FRL SS+ +++ PR+ LE VA GTG+ RLW A + + E FLFVND Q+EE
Sbjct: 3058 LYDDRDRTRLYEIWHVMVHSRLRLDVHATLGQASAADLVVRGDRYSRRVRCFTSAPADCEFDPPSTFQLVSGAYNRVDMRYRPTRTGGSKIQVHMVDVDTQELVGAWLATATALPPVVTKTYELDLPVGKESHKRIAYANPWLQARAFRLRSSDETVMAPRHGGLEXXXXXXXXXXXXXXXXXXXXXXVAAGGTGFIRLWLHA-PDAAGSAEVFLFVNDENDQNEE 3282
BLAST of mRNA_H-elongata_contig84174.16031.1 vs. uniprot
Match: A0A7S2QW27_9STRA (Hypothetical protein n=2 Tax=Triparma pacifica TaxID=91992 RepID=A0A7S2QW27_9STRA) HSP 1 Score: 217 bits (553), Expect = 1.440e-61 Identity = 93/210 (44.29%), Postives = 153/210 (72.86%), Query Frame = 1
Query: 1 VYDDQYQGSLCEIWHVVVQARLRMDVHALLGQQSPTDLIVRGDRYSRKVRAFSSAPAEVAFEPDSTFQLVPGAYNRVEMRFQPLSIGSRRIHVHIVDVESMEIVGAWLATATAMPPVVTKSYEVDLPLGRACHKRIAYSNSWSSTKLFRLASSNPSILRPRYESLEVAGNGTGYFRLWFAALGEISTRKEAFLFVNDIKGQSEECLLIRV 630
VYDD YQG + E WHVVVQ+RLR+DV+A +GQ +P++L+++GD+++R+V +SS+PAE F+P FQLVPGA+NR ++F+ GS++IH+H+VD+++ E+V AWL T + PV+TK Y+V +P+G C K+++++N W T+ ++L SS+P++++PR ++++ GY RL+F + + T +E LFVND + +EE L++V
Sbjct: 2261 VYDDHYQGVVHECWHVVVQSRLRLDVNAAVGQSTPSELVIQGDKFARRVMVYSSSPAETFFDPSRPFQLVPGAFNRAAVKFRMKQAGSKKIHIHMVDLDTKELVCAWLVTVNSALPVITKVYDVQVPIGVGCSKKLSFTNQWDRTRRYKLMSSDPAVMKPRNPTVDIEPRAIGYMRLYFNPIDVVGT-EEVILFVNDEQDMNEEAFLLKV 2469
BLAST of mRNA_H-elongata_contig84174.16031.1 vs. uniprot
Match: A0A7S2HFZ8_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2HFZ8_9STRA) HSP 1 Score: 202 bits (513), Expect = 3.580e-61 Identity = 92/213 (43.19%), Postives = 138/213 (64.79%), Query Frame = 1
Query: 1 VYDDQYQGSLCEIWHVVVQARLRMDVHALLGQQSPTDLIVRGDRYSRKVRAFSSAPAEVAFEPDSTFQLVPGAYNRVEMRFQPLSI-GSRRIHVHIVDVESMEIVGAWLATATAMPPVVTKSYEVDLPLGRACHKRIAYSNSWSSTKLFRLASSNPSILRPRYESLEVAGNGTGYFRLWFAALGEISTRKEAFLFVNDIKGQSEECLLIRVRG 636
+YDD+Y L EIWHV V +RLR D+ A LGQ SP +L+VRGD Y R+V+A+SS P E+ F P F L P YN++E+R+ P G RR+HVH+VD+++ E+V AW+ T A PP +TK Y+VD+ +G HK++++ N WS +LFRL S++P+++RP+ + LE+ + +L+ + E +L VND + Q+EEC I +
Sbjct: 85 IYDDRYSARLNEIWHVTVASRLRKDIQATLGQASPMELVVRGDGYRRRVKAYSSEPREIKFLPADVFHLAPQQYNKLELRWTPFGTDGMRRVHVHLVDIQTGELVCAWIVTTVATPPAITKDYQVDVAVGEGSHKKVSFDNPWSRHRLFRLRSTDPNVMRPKTDELEIPPRDRAFIKLYISPFLRPGFA-EVYLLVNDEEDQNEECFRIVINA 296
BLAST of mRNA_H-elongata_contig84174.16031.1 vs. uniprot
Match: A0A7S1XUC6_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1XUC6_9STRA) HSP 1 Score: 205 bits (521), Expect = 2.770e-57 Identity = 102/218 (46.79%), Postives = 144/218 (66.06%), Query Frame = 1
Query: 1 VYDDQYQGSLCEIWHVVVQARLRMDVHALLGQQSPTDLIVRGDRYSRKVRAFSSAPAEVAFEPDSTFQLVPGAYNRVEMRFQPLSIGS--RRIHVHIVDVESMEIVGAWLATATAMPPVVTKSYEVDLPLGRACHKRIAYSNSWSSTKLFRLASSNPSILRPRYESLEVAGNGTGYFRLWFAALGEI---STRKEAFLFVNDIKGQSEECLLIRVRGI 639
VY D YQ L E+WHV V ARLR+D+HA GQ DL+VRGD ++R+VRA+SS P EV+F+ F LV G+YNR+ +R++P + S +RI VH++D ++ ++V W+ATAT PVVT++++VD+ + KRI YSN WS + F+L SSNP ++RPR LEV +GY RL A G+ +E LFVND + +EEC L+R+RG+
Sbjct: 1342 VYRDPYQAQLRELWHVHVNARLRLDLHATAGQAVTADLVVRGDSFTRRVRAYSSLPKEVSFDQAGEFALVAGSYNRIGLRYRPTGLSSVTKRISVHLIDADTQQLVCGWIATATTAAPVVTRTFDVDVTVDDEASKRIPYSNPWSRRRAFKLISSNPGLVRPRSARLEVEARASGYIRL--ALNGDAIDAGAVEEVLLFVNDDEDNTEECFLLRLRGV 1557
BLAST of mRNA_H-elongata_contig84174.16031.1 vs. uniprot
Match: T0RSH2_SAPDV (Uncharacterized protein n=1 Tax=Saprolegnia diclina (strain VS20) TaxID=1156394 RepID=T0RSH2_SAPDV) HSP 1 Score: 200 bits (509), Expect = 1.200e-55 Identity = 94/210 (44.76%), Postives = 139/210 (66.19%), Query Frame = 1
Query: 1 VYDDQYQGSLCEIWHVVVQARLRMDVHALLGQQSPTDLIVRGDRYSRKVRAFSSAPAEVAFEPDSTFQLVPGAYNRVEMRFQPLSIGSRRIHVHIVDVESMEIVGAWLATATAMPPVVTKSYEVDLPLGRACHKRIAYSNSWSSTKLFRLASSNPSILRPRYESLEVAGNGTGYFRLWFAALGEISTRKEAFLFVNDIKGQSEECLLIRV 630
+YDD Y L EIW + +Q+ +R+D+HA +GQ +LIV+GD R+V FSS P E+ F+P FQL+P A+NR+E+RF + + +++I VH+VDV+S ++VGAWL T P+VTK ++V LP G K+I+Y N W + F L S++PSI++PR L++ GNG GY RL FA + K+ +LF+ND + Q+EECLL +
Sbjct: 3407 LYDDMYHARLHEIWRIHIQSMMRLDLHATMGQGVQNELIVKGDAMPRRVSCFSSHPTELQFKPSGIFQLIPHAFNRIEVRFATMQVCAKQIVVHVVDVDSRDLVGAWLLNTTVSEPIVTKVFDVTLPTGVPVLKKISYRNPWDEDRSFVLRSNDPSIMKPREPRLQLQGNGDGYLRLAFAP-HSLPCSKKVYLFINDHQDQNEECLLFHL 3615
BLAST of mRNA_H-elongata_contig84174.16031.1 vs. uniprot
Match: A0A7S2C1Z8_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2C1Z8_9STRA) HSP 1 Score: 197 bits (500), Expect = 1.860e-54 Identity = 95/213 (44.60%), Postives = 137/213 (64.32%), Query Frame = 1
Query: 1 VYDDQYQGSLCEIWHVVVQARLRMDVHALLGQQSPTDLIVRGDRYSRKVRAFSSAPAEVAFEPDSTFQLVPGAYNRVEMRFQPLSI-GSRRIHVHIVDVESMEIVGAWLATATAMPPVVTKSYEVDLPLGRACHKRIAYSNSWSSTKLFRLASSNPSILRPRYESLEVAGNGTGYFRLWFAALGEISTRKEAFLFVNDIKGQSEECLLIRVRG 636
++DD ++ L EIWHV+V +RLR DV A LGQ SP + V GD + R VRA++S E F P S FQLVP A N + F PL G+R+ HVH+VDV++ ++V AW+ T A PP VTK Y+VD+ +G A HK+I+Y N W+ + ++L SS+P+++RP+ L++ +G + RL+ A L R E FL VND +GQ+E+C + V
Sbjct: 1646 IFDDPWRCRLSEIWHVIVASRLRKDVQAKLGQASPIEFTVPGDNHLRHVRAYASNELETRFLPSSVFQLVPNAVNSFKASFTPLGAPGTRKTHVHLVDVDTKQLVAAWILTCVAAPPQVTKDYDVDVRVGEAAHKKISYENPWNRRRSYQLMSSDPNVMRPKVNELQIQPHGREFMRLYIAPLDRAG-RVEVFLMVNDERGQNEDCFRVIVNA 1857
BLAST of mRNA_H-elongata_contig84174.16031.1 vs. uniprot
Match: A0A6G0XXV1_9STRA (Uncharacterized protein n=2 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0XXV1_9STRA) HSP 1 Score: 197 bits (500), Expect = 1.930e-54 Identity = 99/210 (47.14%), Postives = 138/210 (65.71%), Query Frame = 1
Query: 1 VYDDQYQGSLCEIWHVVVQARLRMDVHALLGQQSPTDLIVRGDRYSRKVRAFSSAPAEVAFEPDSTFQLVPGAYNRVEMRFQPLSIGSRRIHVHIVDVESMEIVGAWLATATAMPPVVTKSYEVDLPLGRACHKRIAYSNSWSSTKLFRLASSNPSILRPRYESLEVAGNGTGYFRLWFAALGEISTRKEAFLFVNDIKGQSEECLLIRV 630
+Y+D Y L EIW + VQA LR+D+ A +GQ +LI++GD R+VR +SS P EV F PD FQL+P A+NR+E+ F + I ++I V++VDV+S E+VG+WL T PVVTK ++V LPLG K+I+Y N W +LF L SS+PSI++PR L + G G G+ RL FA I+ K+ +LF+ND Q+EECLL+ V
Sbjct: 3075 LYEDMYHARLFEIWRICVQAMLRLDLQASMGQGVRNELIIKGDTMPRRVRCYSSQPHEVQFNPDRIFQLLPHAFNRIELLFCSMEIRIKQIVVNLVDVDSYELVGSWLLNTTTTEPVVTKVFDVTLPLGVPVLKKISYRNPWDDDRLFILRSSDPSIMKPRERKLLLPGYGDGFLRLAFAP-HSIACSKKVYLFINDGSDQNEECLLLHV 3283
BLAST of mRNA_H-elongata_contig84174.16031.1 vs. uniprot
Match: A0A067CRA1_SAPPC (Uncharacterized protein n=1 Tax=Saprolegnia parasitica (strain CBS 223.65) TaxID=695850 RepID=A0A067CRA1_SAPPC) HSP 1 Score: 196 bits (498), Expect = 3.580e-54 Identity = 93/210 (44.29%), Postives = 137/210 (65.24%), Query Frame = 1
Query: 1 VYDDQYQGSLCEIWHVVVQARLRMDVHALLGQQSPTDLIVRGDRYSRKVRAFSSAPAEVAFEPDSTFQLVPGAYNRVEMRFQPLSIGSRRIHVHIVDVESMEIVGAWLATATAMPPVVTKSYEVDLPLGRACHKRIAYSNSWSSTKLFRLASSNPSILRPRYESLEVAGNGTGYFRLWFAALGEISTRKEAFLFVNDIKGQSEECLLIRV 630
+YDD Y L EIW + +Q+ +R+D+HA +GQ +LI++GD R+V FSS P E+ F P FQL+P A+NR+E+RF + + +++I VH+VDV+S ++VGAWL T PVVTK ++V LP G K+I+Y N W + F L S++ SI++PR L++ GNG GY RL FA + K+ +LF+ND + Q+EECLL +
Sbjct: 3252 LYDDMYHARLHEIWRIQIQSMMRLDLHATMGQGVQNELIIKGDAMPRRVSCFSSHPNELQFNPSGIFQLIPHAFNRIEVRFATMQVCAKQIVVHVVDVDSRDLVGAWLLNTTVSEPVVTKVFDVTLPTGVPVLKKISYRNPWDEDRNFVLRSNDASIMKPREPRLQLRGNGDGYLRLAFAP-HSLPCSKKVYLFINDHQDQNEECLLFHL 3460 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig84174.16031.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig84174.16031.1 >prot_H-elongata_contig84174.16031.1 ID=prot_H-elongata_contig84174.16031.1|Name=mRNA_H-elongata_contig84174.16031.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=214bp VYDDQYQGSLCEIWHVVVQARLRMDVHALLGQQSPTDLIVRGDRYSRKVRback to top mRNA from alignment at H-elongata_contig84174:159..1646+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig84174.16031.1 ID=mRNA_H-elongata_contig84174.16031.1|Name=mRNA_H-elongata_contig84174.16031.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1488bp|location=Sequence derived from alignment at H-elongata_contig84174:159..1646+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig84174:159..1646+ >mRNA_H-elongata_contig84174.16031.1 ID=mRNA_H-elongata_contig84174.16031.1|Name=mRNA_H-elongata_contig84174.16031.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1284bp|location=Sequence derived from alignment at H-elongata_contig84174:159..1646+ (Himanthalia elongata Himel1 dioecious)back to top |