mRNA_H-elongata_contig84160.16030.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig84160.16030.1
Unique NamemRNA_H-elongata_contig84160.16030.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig84160.16030.1 vs. uniprot
Match: A0A6H5L6R7_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L6R7_9PHAE)

HSP 1 Score: 146 bits (369), Expect = 6.140e-38
Identity = 76/150 (50.67%), Postives = 101/150 (67.33%), Query Frame = 1
Query:    1 PNIFKEAMSLSRAAYWKEAAKKEIQSLKNHGVYEIVPISFVPSFQKIVGTRWVNKIKADGTCKSRLVVQGLPQVPGIKNGGTFTSVCRLQSIRMMVAIAAELGFEIYMIDVQTAFLNADVDEEVFVKMTPGYERINKAGVSLAKILKKSL 450
            PN  K+AM L     WK A  KEI+SL++  VY++VP + VP    ++G++WV K+K + T K+RLV +G  QVPG   GGTF  VCRLQSIRM+ AIAAE   ++  +DV+TAFL AD++E VFV+M PGYE  N   + L   L+KSL
Sbjct:  302 PNTCKKAMELPETKLWKAATDKEIKSLQDLKVYKLVPRTDVPLGHNVIGSKWVFKVKPENTHKARLVAKGWNQVPGRDCGGTFAPVCRLQSIRMVFAIAAEKDLDVIQLDVKTAFLYADIEENVFVEMAPGYEAKNMEELQLVMKLEKSL 451          
BLAST of mRNA_H-elongata_contig84160.16030.1 vs. uniprot
Match: A0A6H5KWT4_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KWT4_9PHAE)

HSP 1 Score: 137 bits (345), Expect = 4.790e-35
Identity = 73/151 (48.34%), Postives = 96/151 (63.58%), Query Frame = 1
Query:    1 PNIFKEAMSLSRAAYWKEAAKKEIQSLKNHGVYEIVPISFVPSFQKIVGTRWVNKIKADGTCKSRLVVQGLPQVPGIKNGGTFTSVCRLQSIRMMVAIAAELGFEIYMIDVQTAFLNADVDEEVFVKMTPGYERINKAGVSLAKILKKSLY 453
            P   +EA ++     W  AA++EI SLK   V+++VP + VP  +K + ++WV K KADG+ K RLVVQG  QVPG+  G TF  VCRLQSIRM+   A +   E+  +DV TAFL AD+ E VFV+  PG+E  NK G  L   L+KSLY
Sbjct:   50 PQTIEEARAMPDGEQWNTAAEREIASLKERQVHKLVPRTAVPPGRKRIKSKWVFKRKADGSFKGRLVVQGWNQVPGLDYGSTFAPVCRLQSIRMLACTAVQFNLELDQMDVSTAFLYADILENVFVEQPPGFEVKNKDGGDLVMQLQKSLY 200          
BLAST of mRNA_H-elongata_contig84160.16030.1 vs. uniprot
Match: A0A6H5JIN1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JIN1_9PHAE)

HSP 1 Score: 134 bits (337), Expect = 1.540e-33
Identity = 71/151 (47.02%), Postives = 95/151 (62.91%), Query Frame = 1
Query:    1 PNIFKEAMSLSRAAYWKEAAKKEIQSLKNHGVYEIVPISFVPSFQKIVGTRWVNKIKADGTCKSRLVVQGLPQVPGIKNGGTFTSVCRLQSIRMMVAIAAELGFEIYMIDVQTAFLNADVDEEVFVKMTPGYERINKAGVSLAKILKKSLY 453
            P   +EA ++     W  AA++EI SLK   V+++VP + VP  +K + +RWV K K DG+ K RLV QG  QVPG+  G T+  VCRLQSIRM+  IA +   E+  +DV TAFL AD+ E VFV+  PG+E  +K G  L   L+KSLY
Sbjct:  836 PRTIEEARAMPDGEQWNAAAEREIASLKERQVFKLVPRTAVPPGRKRIKSRWVFKRKVDGSFKGRLVAQGWNQVPGLDCGSTYAPVCRLQSIRMLACIAVQFNLELDQMDVSTAFLYADILENVFVEQPPGFEVKDKDGGDLVMQLQKSLY 986          
BLAST of mRNA_H-elongata_contig84160.16030.1 vs. uniprot
Match: A0A6H5KAG6_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KAG6_9PHAE)

HSP 1 Score: 133 bits (334), Expect = 3.830e-33
Identity = 67/152 (44.08%), Postives = 101/152 (66.45%), Query Frame = 1
Query:    1 PNIFKEAMSLSRAAYWKEAAKKEIQSLKNHGVYEIVPISFVPSFQKIVGTRWVNKIKADGTCKSRLVVQGLPQVPGIKNGGTFTSVCRLQSIRMMVAIAAELGFEIYMIDVQTAFLNADVDEEVFVKMTPGYERINKA-GVSLAKILKKSLY 453
            PN +K+AM+  ++  W++A  KE+ SL +H V +++P+S VP+   ++GTRWV ++K DG  K+R+VVQG  Q  GI    TF  VC++ S R+++AIAA  G+ +  +DVQTAFLN  + E+V+    PG+E+I  + G  L   LKKSLY
Sbjct:  644 PNTYKQAMNSPQSTEWEQAMLKELASLDDHDVADLIPVSSVPAGCSVIGTRWVYRVKTDGRFKARVVVQGWAQQHGIDCFTTFAPVCKIGSQRLLLAIAAAQGWPVIAMDVQTAFLNGKLSEDVYTYQAPGFEKIESSTGKPLVWKLKKSLY 795          
BLAST of mRNA_H-elongata_contig84160.16030.1 vs. uniprot
Match: A0A6H5KJH6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJH6_9PHAE)

HSP 1 Score: 132 bits (332), Expect = 7.360e-33
Identity = 69/151 (45.70%), Postives = 94/151 (62.25%), Query Frame = 1
Query:    1 PNIFKEAMSLSRAAYWKEAAKKEIQSLKNHGVYEIVPISFVPSFQKIVGTRWVNKIKADGTCKSRLVVQGLPQVPGIKNGGTFTSVCRLQSIRMMVAIAAELGFEIYMIDVQTAFLNADVDEEVFVKMTPGYERINKAGVSLAKILKKSLY 453
            P   +EA +   A  W  AA++E++SL +  VY++VP S VP  +K + ++WV K KADGT K R+V QG  QVPG+  G T+  VCR+QS+RM+  I  E       +DV TAFL AD+ EEVFV+  PG+E  +K G  +   L KSLY
Sbjct: 1151 PRTIQEARASPDATKWNAAAEREMKSLSDRKVYKLVPRSAVPPERKRIKSKWVFKRKADGTFKGRVVAQGWNQVPGLDCGSTYAPVCRIQSVRMVACITVEFNLIFDQMDVSTAFLYADIQEEVFVEQPPGFEVKDKDGGDMVMKLNKSLY 1301          
BLAST of mRNA_H-elongata_contig84160.16030.1 vs. uniprot
Match: A0A6H5J842_9PHAE (Gag-Pol-p199 n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J842_9PHAE)

HSP 1 Score: 132 bits (332), Expect = 7.390e-33
Identity = 69/151 (45.70%), Postives = 94/151 (62.25%), Query Frame = 1
Query:    1 PNIFKEAMSLSRAAYWKEAAKKEIQSLKNHGVYEIVPISFVPSFQKIVGTRWVNKIKADGTCKSRLVVQGLPQVPGIKNGGTFTSVCRLQSIRMMVAIAAELGFEIYMIDVQTAFLNADVDEEVFVKMTPGYERINKAGVSLAKILKKSLY 453
            P   +EA +   A  W  AA++E++SL +  VY++VP S VP  +K + ++WV K KADGT K R+V QG  QVPG+  G T+  VCR+QS+RM+  I  E       +DV TAFL AD+ EEVFV+  PG+E  +K G  +   L KSLY
Sbjct: 1316 PRTIQEARASPDATKWNAAAEREMKSLSDRKVYKLVPRSAVPPERKRIKSKWVFKRKADGTFKGRVVAQGWNQVPGLDCGSTYAPVCRIQSVRMVACITVEFNLIFDQMDVSTAFLYADIQEEVFVEQPPGFEVKDKDGGDMVMKLNKSLY 1466          
BLAST of mRNA_H-elongata_contig84160.16030.1 vs. uniprot
Match: A0A6H5KL37_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KL37_9PHAE)

HSP 1 Score: 132 bits (331), Expect = 9.370e-33
Identity = 70/151 (46.36%), Postives = 94/151 (62.25%), Query Frame = 1
Query:    1 PNIFKEAMSLSRAAYWKEAAKKEIQSLKNHGVYEIVPISFVPSFQKIVGTRWVNKIKADGTCKSRLVVQGLPQVPGIKNGGTFTSVCRLQSIRMMVAIAAELGFEIYMIDVQTAFLNADVDEEVFVKMTPGYERINKAGVSLAKILKKSLY 453
            P   +EA ++     W  AA++EI SLK   VY++VP + VP  +K + ++WV K KA G+ K RLV QG  QVPG+  G T+  VCR QSIRM+  IA +   E+  +DV TAFL AD+ E VFV+  PG+E  +K G  L   L+KSLY
Sbjct:  459 PRTIEEARAMPDGEQWNAAAEREIASLKERQVYKLVPRTAVPPGRKRIKSKWVFKRKAGGSFKGRLVAQGWNQVPGLDCGNTYAPVCRFQSIRMLACIAVQFNLELDQMDVSTAFLYADILENVFVEQPPGFEVKDKDGGDLVMQLQKSLY 609          
BLAST of mRNA_H-elongata_contig84160.16030.1 vs. uniprot
Match: A0A6H5KCZ9_9PHAE (Integrase catalytic domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KCZ9_9PHAE)

HSP 1 Score: 128 bits (322), Expect = 1.080e-31
Identity = 70/152 (46.05%), Postives = 98/152 (64.47%), Query Frame = 1
Query:    1 PNIFKEAMSLSRAAYWKEAAKKEIQSLKNHGVYEIVPISFVPSFQKIVGTRWVNKIKADGTCKSRLVVQGLPQVPGIKNGGTFTSVCRLQSIRMMVAIAAELGFEIYMIDVQTAFLNADVDEEVFVKMTPGYERINKA-GVSLAKILKKSLY 453
            P  ++EAM    A  WK A  KEI+SLK+H V ++VP+  +P   K +G+RW+ K+KA G  K+RL+VQG  Q  GI  GGT+  V R  S  + +AIAAE G+++  +DV TAFL + V+EEV+V+   GYE  ++  G+ L   LKKSLY
Sbjct:  326 PTTYQEAMRSMDADQWKAAMDKEIRSLKDHDVADLVPVQRLPPGAKPIGSRWLYKMKATGVMKARLIVQGWGQRHGIDCGGTYGPVSRFSSQLVFMAIAAERGYDVETMDVVTAFLQSKVEEEVYVRQAKGYEITDEVTGLPLVMKLKKSLY 477          
BLAST of mRNA_H-elongata_contig84160.16030.1 vs. uniprot
Match: A0A6H5KY84_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KY84_9PHAE)

HSP 1 Score: 129 bits (323), Expect = 1.180e-31
Identity = 70/152 (46.05%), Postives = 99/152 (65.13%), Query Frame = 1
Query:    1 PNIFKEAMSLSRAAYWKEAAKKEIQSLKNHGVYEIVPISFVPSFQKIVGTRWVNKIKADGTCKSRLVVQGLPQVPGIKNGGTFTSVCRLQSIRMMVAIAAELGFEIYMIDVQTAFLNADVDEEVFVKMTPGYERINKA-GVSLAKILKKSLY 453
            P  ++EAM    A  WK A  KE++SLK+H V ++VPI  +P   K +G+RW+ K+KA G  K+RL+VQG  Q  GI  GGT+  V R  S  +++AIAAE G+ +  +DV TAFL ++V+EEV+V+   GYE  ++  G+ L   LKKSLY
Sbjct:  890 PTTYQEAMRSMDADQWKAAMDKEMKSLKDHDVADLVPIQSLPPGAKPIGSRWLYKMKATGVMKARLIVQGWGQRHGIDCGGTYAPVSRFSSQLVLMAIAAERGYVVETMDVVTAFLQSNVEEEVYVRQAKGYEITDEVTGLPLVMKLKKSLY 1041          
BLAST of mRNA_H-elongata_contig84160.16030.1 vs. uniprot
Match: A0A6H5JVC8_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JVC8_9PHAE)

HSP 1 Score: 120 bits (302), Expect = 3.890e-31
Identity = 66/140 (47.14%), Postives = 92/140 (65.71%), Query Frame = 1
Query:   37 AAYWKEAAKKEIQSLKNHGVYEIVPISFVPSFQKIVGTRWVNKIKADGTCKSRLVVQGLPQVPGIKNGGTFTSVCRLQSIRMMVAIAAELGFEIYMIDVQTAFLNADVDEEVFVKMTPGYERINKA-GVSLAKILKKSLY 453
            A  WK A  KE++SLK+H V ++VPI  +P   K +G+RW+ K+KA G  K+RL VQG  Q  GI  GGT+  V R  S  +++AIAAE G+ +  +DV TAFL ++V+EEV+V+   GYE  ++  G+ L   LKKSLY
Sbjct:    6 ADQWKAAMDKEMRSLKDHDVADLVPIQSLPPGAKPIGSRWLYKMKATGVMKARLTVQGWGQRYGIDYGGTYAPVSRFSSQLVLMAIAAERGYVVETMDVVTAFLQSNVEEEVYVRQAKGYEITDEVTGLPLVMKLKKSLY 145          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig84160.16030.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5L6R7_9PHAE6.140e-3850.67Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5KWT4_9PHAE4.790e-3548.34Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JIN1_9PHAE1.540e-3347.02Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KAG6_9PHAE3.830e-3344.08Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5KJH6_9PHAE7.360e-3345.70Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5J842_9PHAE7.390e-3345.70Gag-Pol-p199 n=1 Tax=Ectocarpus sp. CCAP 1310/34 T... [more]
A0A6H5KL37_9PHAE9.370e-3346.36Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5KCZ9_9PHAE1.080e-3146.05Integrase catalytic domain-containing protein (Fra... [more]
A0A6H5KY84_9PHAE1.180e-3146.05Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5JVC8_9PHAE3.890e-3147.14Reverse transcriptase Ty1/copia-type domain-contai... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig84160contigH-elongata_contig84160:1540..1998 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeFungi
Seed ortholog score102.4
Seed ortholog evalue1.8e-19
Seed eggNOG ortholog27289.XP_003672078.1
EggNOG free text desc.Tkp5 protein
EggNOG OGs38DPC@33154,3NUZ7@4751,3QNZW@4890,3RTT4@4891,3S0WE@4893,COG2801@1,KOG0017@2759
COG Functional cat.L
Best tax levelSaccharomycetaceae
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons1
Model size459
Cds size438
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931246.8465421-CDS-H-elongata_contig84160:1539..19771622931246.8465421-CDS-H-elongata_contig84160:1539..1977Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig84160 1540..1977 -
1691679758.2552855-CDS-H-elongata_contig84160:1539..19771691679758.2552855-CDS-H-elongata_contig84160:1539..1977Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig84160 1540..1977 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931246.8697128-UTR-H-elongata_contig84160:1977..19981622931246.8697128-UTR-H-elongata_contig84160:1977..1998Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig84160 1978..1998 -
1691679758.2786462-UTR-H-elongata_contig84160:1977..19981691679758.2786462-UTR-H-elongata_contig84160:1977..1998Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig84160 1978..1998 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig84160.16030.1prot_H-elongata_contig84160.16030.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig84160 1540..1977 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig84160.16030.1

>prot_H-elongata_contig84160.16030.1 ID=prot_H-elongata_contig84160.16030.1|Name=mRNA_H-elongata_contig84160.16030.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=146bp
MSLSRAAYWKEAAKKEIQSLKNHGVYEIVPISFVPSFQKIVGTRWVNKIK
ADGTCKSRLVVQGLPQVPGIKNGGTFTSVCRLQSIRMMVAIAAELGFEIY
MIDVQTAFLNADVDEEVFVKMTPGYERINKAGVSLAKILKKSLYVL
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mRNA from alignment at H-elongata_contig84160:1540..1998-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig84160.16030.1 ID=mRNA_H-elongata_contig84160.16030.1|Name=mRNA_H-elongata_contig84160.16030.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=459bp|location=Sequence derived from alignment at H-elongata_contig84160:1540..1998- (Himanthalia elongata Himel1 dioecious)
CCAAATATCTTTAAGGAGGCGATGAGTCTTTCGAGAGCAGCGTATTGGAA GGAAGCCGCAAAAAAGGAAATTCAAAGTCTGAAGAACCACGGCGTCTACG AGATAGTACCGATATCCTTTGTCCCTTCTTTTCAAAAGATAGTCGGTACT CGGTGGGTAAATAAAATCAAGGCGGACGGTACATGTAAAAGCCGTCTGGT TGTGCAAGGATTGCCTCAAGTCCCTGGTATCAAAAATGGGGGTACTTTCA CTTCCGTCTGTAGGCTGCAAAGCATTCGCATGATGGTGGCGATTGCGGCA GAGCTAGGTTTCGAAATTTACATGATCGACGTCCAAACGGCATTTCTAAA CGCCGATGTGGACGAGGAAGTTTTCGTCAAGATGACACCCGGATACGAGC GCATCAACAAGGCTGGAGTTTCCTTGGCGAAGATACTTAAGAAAAGCCTG TACGTACTC
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Coding sequence (CDS) from alignment at H-elongata_contig84160:1540..1998-

>mRNA_H-elongata_contig84160.16030.1 ID=mRNA_H-elongata_contig84160.16030.1|Name=mRNA_H-elongata_contig84160.16030.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=876bp|location=Sequence derived from alignment at H-elongata_contig84160:1540..1998- (Himanthalia elongata Himel1 dioecious)
ATGAGTCTTTCGAGAGCAGCGTATTGGAAGGAAGCCGCAAAAAAGGAAAT
TCAAAGTCTGAAGAACCACGGCGTCTACGAGATAGTACCGATATCCTTTG
TCCCTTCTTTTCAAAAGATAGTCGGTACTCGGTGGGTAAATAAAATCAAG
GCGGACGGTACATGTAAAAGCCGTCTGGTTGTGCAAGGATTGCCTCAAGT
CCCTGGTATCAAAAATGGGGGTACTTTCACTTCCGTCTGTAGGCTGCAAA
GCATTCGCATGATGGTGGCGATTGCGGCAGAGCTAGGTTTCGAAATTTAC
ATGATCGACGTCCAAACGGCATTTCTAAACGCCGATGTGGACGAGGAAGT
TTTCGTCAAGATGACACCCGGATACGAGCGCATCAACAAGGCTGGAGTTT
CCTTGGCGAAGATACTTAAGAAAAGCCTGTACGTACTCATGAGTCTTTCG
AGAGCAGCGTATTGGAAGGAAGCCGCAAAAAAGGAAATTCAAAGTCTGAA
GAACCACGGCGTCTACGAGATAGTACCGATATCCTTTGTCCCTTCTTTTC
AAAAGATAGTCGGTACTCGGTGGGTAAATAAAATCAAGGCGGACGGTACA
TGTAAAAGCCGTCTGGTTGTGCAAGGATTGCCTCAAGTCCCTGGTATCAA
AAATGGGGGTACTTTCACTTCCGTCTGTAGGCTGCAAAGCATTCGCATGA
TGGTGGCGATTGCGGCAGAGCTAGGTTTCGAAATTTACATGATCGACGTC
CAAACGGCATTTCTAAACGCCGATGTGGACGAGGAAGTTTTCGTCAAGAT
GACACCCGGATACGAGCGCATCAACAAGGCTGGAGTTTCCTTGGCGAAGA
TACTTAAGAAAAGCCTGTACGTACTC
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