mRNA_H-elongata_contig84153.16029.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig84153.16029.1 vs. uniprot
Match: A0A2R6RYD4_ACTCC (Endonuclease n=2 Tax=Actinidia chinensis var. chinensis TaxID=1590841 RepID=A0A2R6RYD4_ACTCC) HSP 1 Score: 245 bits (626), Expect = 7.570e-66 Identity = 199/659 (30.20%), Postives = 307/659 (46.59%), Query Frame = 1
Query: 1 CVHC---SESRVRRYAVPKSTENRTDWGAGRLFIDLSGPFHDTSLGGNIFIMLCIDVFTRFKMVRFLKHKSDVTNALRDIIIDYFAPEGVKIGVIRTDGGGEWHGQ-FLSFLSKLEIKRESTPPYTSQYNGTVERALGLLRDKTVVLLRGVMEGKSDRLWAEAMAYACGMWNRCISSSLDSGTSPYELWYGRRPT-FDNIPPFGTVGYYD---------------------------------QILNRQAVTW------------HLPTGGTTHRRL--PVRRTKTTGYTSTSSTLEVVPEEPEEETPEIQPRDDLSER--SEXXXXXXXSGEQ-------------------LDPEPTTMGEAQASSEWPQWKRVIAREMGGQTARGVWQVVERPKGKTVLGTRVVFKRKIDKDGRIEKYKCRLVAQGFRQVKGIHYEESSSPTPAQASISMVLGMIATLGWEARQLDVDMAYLEAEVEEEIYVELPEAYR-DSRKHVGV-LKQAMYGLVHPGLLW*KTFGIELEVKGFQRSQGDPCVFRRIFHGVVVVVIVVYVDDLLVASATKRDGEQAVRDLCSCFPIKDLGKASYYLGCHITRDRNSGTLTFDQHQYIHTMAERFGVTKTR--IIPPVAGGKALSKSDSPQTDAEVEEMRQIPY 1746
C HC ++RV+ TE D+ + D+ GP + SLGG+ + + +D F+R V ++HK +V G KI +R+D GGE+ F SK I R T T Q NG ER L DK ++ G S WAEA+ YA + NR S++++ G +P E+W G+ T +D++ FG Y+ +I+N + VT+ +L T L PV TKT T+++ P+EE+ +I DL E S+ S Q ++ P T +A +E P+WKR + EM W++VE PKGK +G + ++ +K D G ++K RLVA+G+ Q +GI Y E SP +SI ++L ++A E QLDV A+L ++EEEIY+ P ++ ++H+ LK+++YGL W K F + ++ G+ RSQ D CV+ R ++ +++YVDD+L+AS +K + ++ L F +KDLG+A LG I RDR GT+ Q QY+ + +RFG+ + + P+A LS S SP T+ E + M IPY
Sbjct: 470 CEHCVLGKQTRVKFGTAIHQTEGILDY----VHSDVWGPSKNASLGGSRYFVTFVDDFSRRVWVYTMRHKDEVLEIFLKWKKMIETQTGRKIKKLRSDNGGEYRSDPFFDVCSKEGIVRHFTIKGTPQQNGVAERMNRTLVDKVRCMICNA--GLSKAFWAEAINYAAHLTNRLPSTAIE-GKTPMEVWSGKCATDYDSLHIFGCPAYFHVKEDKLDPRAKKAIFVGFSTGVKGYRLWCPETKKIVNSRDVTFDESVMMKNSEKENLSPISTQQVELVSPVVPTKTV------QTVDI----PDEESDDIDTTPDLKEAQSSQPAESIATSRPQRVIRRPARYTDTVAYALPVIEGVPCTYKDAVQGTENPKWKRAMDEEMKSLHKNQTWELVELPKGKKAIGCKWIYGKKEDTQG--IRFKARLVAKGYAQKEGIDYNEVFSPVVKHSSIRILLALVAQFDLELAQLDVKTAFLHGDLEEEIYMSQPAGFQVPGKEHLACRLKKSLYGLKQSPRQWYKRFDLFMDEHGYTRSQFDHCVYFRKLQDGSMIYLLLYVDDMLIASKSKVEIDRLKAQLSREFEMKDLGEAKKILGMEIKRDRVKGTVWLTQSQYLKKVLQRFGIDSSTKPVSTPLASHFRLSASMSPHTEDERKHMENIPY 1109
BLAST of mRNA_H-elongata_contig84153.16029.1 vs. uniprot
Match: A0A7N2KXD4_QUELO (Uncharacterized protein n=1 Tax=Quercus lobata TaxID=97700 RepID=A0A7N2KXD4_QUELO) HSP 1 Score: 238 bits (606), Expect = 3.460e-63 Identity = 187/633 (29.54%), Postives = 298/633 (47.08%), Query Frame = 1
Query: 1 CVHCSESRVRRYAVPKSTENRTDWGAGRLFIDLSGPFHDTSLGGNIFIMLCIDVFTRFKMVRFLKHKSDVTNALRDI--IIDYFAPEGVKIGVIRTDGGGEWHG-QFLSFLSKLEIKRESTPPYTSQYNGTVERALGLLRDKTVV-LLRGVMEGKSDRL--WAEAMAYACGMWNRCISSSLDSGTSPYELWYGRRPTFDNIPPFGTVGYYDQILNRQA-----------------------VTWHLPTGGTTHRRLPV---------------RRTKTTGYTSTSSTLEVVPEEPEEETPEIQPRDDLSERS-EXXXXXXXSGEQLDPEPTTMGEAQASSEWPQWKRVIAREMGGQTARGVWQVVERPKGKTVLGTRVVFKRKIDKDGRIEKYKCRLVAQGFRQVKGIHYEESSSPTPAQASISMVLGMIATLGWEARQLDVDMAYLEAEVEEEIYVELPEAY--RDSRKHVGVLKQAMYGLVHPGLLW*KTFGIELEVKGFQRSQGDPCVFRRIFHGVVVVVIVVYVDDLLVASATKRDGEQAVRD---LCSCFPIKDLGKASYYLGCHITRDRNSGTLTFDQHQYIHTMAERFGVTKTRIIP-PVAGGKALSKSDSPQTDAEVEEMRQIPY 1746
C HC + +R K+T R + + D+ GP + + G + + ID +TR+ V + HKS+ + R +++ + +K +RTD G E+ QF + I R+ T PYTSQ NG ER R++T++ ++R +M + + W +A+ A + NR S S+ S +PYELW G++ +N+ P+G+ GY +R + L + + R + + S S+ LEV P++P+ P R ++ R E Q D EP + EA +SS +W + + EM VW +V+ P G+ +G + V K K D IE+YK RLVA+G+ Q +G+ YEE+ SP AS+ ++L ++A L E Q+DV A+L E++EEIY++ P + + V LK+++YGL W F + GF + D CV+ + G +++ +YVDD+L+A D E + L S F +KD+G+A Y LG I RDR+ L Q YI + ERF + + I PVA ++LS P+T E E+M +PY
Sbjct: 810 CEHCLVGKSKRKPFGKAT--RASFPLQLIHSDICGPMNVRARHGGFYFITFIDDYTRYGHVYLISHKSEALDCFRRYMRLVENQLDKSIK--ALRTDRGREYLSEQFKELCDEKGIARQLTMPYTSQQNGVAER-----RNRTLLEMVRSMMAQANLPISYWGDALLTAAYILNRVPSKSVSS--TPYELWTGKKLDLNNLRPWGSTGYVHNTSHRYGKLGPRGKKCIFIRYSEHSKGYVLIGEQLDGSEMMDQEVDAPSRLVEDKEEILETPRDSGSDSQPSGSTPLEVDPQQPQ---PRRSNRGNIPRRRFEIEGEAFMIASQDDDEPKNVQEALSSSVSNEWMKAMNDEMESMRTNQVWDLVDLPSGRKAIGNKWVLKIKRKADRSIERYKARLVAKGYTQKEGVDYEETFSPVVRFASVRLILAIVANLNLELYQMDVKTAFLNGELDEEIYMDQPIGFVTKGQEHKVCKLKRSIYGLKQSSRQWYLRFHRAVLTNGFTMIEEDHCVYVKRSKG-SFIILSLYVDDILLAG---NDMEMIIATKGWLSSNFEMKDMGEADYILGVKILRDRSKKLLGLSQQTYIKKVLERFQMHNCKPIDTPVAKNESLSLDMCPKTQDEKEKMASVPY 1424
BLAST of mRNA_H-elongata_contig84153.16029.1 vs. uniprot
Match: A0A5A7QRB1_STRAF (Gag-pol polyprotein n=2 Tax=Striga asiatica TaxID=4170 RepID=A0A5A7QRB1_STRAF) HSP 1 Score: 236 bits (603), Expect = 6.650e-63 Identity = 188/643 (29.24%), Postives = 300/643 (46.66%), Query Frame = 1
Query: 1 CVHCSESRVRRYAVPKSTENRTDWGAGRLFIDLSGPFHDTSLGGNIFIMLCIDVFTRFKMVRFLKHKSDVTNALRDIIIDYFAPEGVKIGVIRTDGGGEW-HGQFLSFLSKLEIKRESTPPYTSQYNGTVERALGLLRDKTVV-LLRGVMEGKS--DRLWAEAMAYACGMWNRCISSSLDSGTSPYELWYGRRPTFDNIPPFGT---------------------VGY------------YDQ---------ILNRQAVTWHLPTGGTTHRRL--------PVRRTKTTGYTSTSSTLEVVPEEPEEETPEIQPRDDLSERSEXXXXXXXSGEQ----LDPEPTTMGEAQASSEWPQWKRVIAREMGGQTARGVWQVVERPKGKTVLGTRVVFKRKIDKDGRIEKYKCRLVAQGFRQVKGIHYEESSSPTPAQASISMVLGMIATLGWEARQLDVDMAYLEAEVEEEIYVELPEAY-RDSRKH-VGVLKQAMYGLVHPGLLW*KTFGIELEVKGFQRSQGDPCVFRRIFHGVVVVVIVVYVDDLLVASATKRDGEQAVRDLCSCFPIKDLGKASYYLGCHITRDRNSGTLTFDQHQYIHTMAERFGVTKTRI-IPPVAGGKALSKSDSPQTDAEVEEMRQIPY 1746
C C E ++ + + R+ G + DL GP + GG + + ID ++RF V L KS+ ++ G I +R+D GGE+ G+F ++LS+ I+ + T P T Q NG ER R++T++ ++R +M D W A+ A + N S S+D T+PYE+W GR+P+F +G+ VGY DQ L + H P L P + T+ T+T T V P + P R +S + S + L+ +P T EA + W + EMG + VW +VE P G +G + ++KRK DG+++ +K RLVA+G+ Q++GI Y+E+ SP SI ++L + A + +E Q+DV A+L ++E+IY++ PE + + R+H V L +++YGL W F ++ GF + + CV+++I G VVV +V+YVDD+L+ +K++ L F +KDLG+A + LG + RDR L Q YI T+ RF + ++ + P G LSK SP+T E+EEM+ +PY
Sbjct: 464 CESCLEGKMAKRPFT-AKGYRSQEVLGLIHSDLCGPMSIQARGGFEYYVSFIDDYSRFGYVYLLHRKSECFEKFKEYRAVVEKLHGKCIKSLRSDRGGEYLFGEFRTYLSEAGIESQLTAPGTPQQNGVAER-----RNRTLMEMVRSMMSYSRLPDSFWGLALETASYILNMVPSKSVD--TTPYEMWKGRKPSFSQFRVWGSPAHVLVQEPGKLEKRSEARVFVGYPKGTKGGLFYSPEDQKVIVSTNARFLEEDYIMNHKPASRLVLEELRGEIDGSPPSAQVDTSHNTATRHTESV----PVQTVPRRSGR--VSHLPDRWIGLGESSDSVPGGLESDPRTYDEALQDKDADSWNVAMKAEMGSMDSNQVWDLVELPDGVRPIGCKWIYKRKRGLDGKVQTFKARLVAKGYTQIEGIDYDETFSPVAMLKSIRILLAVAAHMDYEVWQMDVKTAFLNGNLQEDIYMQQPEGFIAEGREHLVCKLNRSIYGLKQASRSWNIRFDEVIQSYGFTQCPDEHCVYKKI-SGSVVVFLVLYVDDILLIGNSKKELSDVKVWLSKQFDMKDLGEAGHILGIRLIRDRKKRMLCLSQSSYIDTVLARFSMQDSKKGMLPFRHGIPLSKEMSPKTSKEIEEMKTVPY 1091
BLAST of mRNA_H-elongata_contig84153.16029.1 vs. uniprot
Match: A0A4Y2GYT7_ARAVE (Retrovirus-related Pol polyprotein from transposon TNT 1-94 (Fragment) n=1 Tax=Araneus ventricosus TaxID=182803 RepID=A0A4Y2GYT7_ARAVE) HSP 1 Score: 229 bits (585), Expect = 1.300e-62 Identity = 166/562 (29.54%), Postives = 265/562 (47.15%), Query Frame = 1
Query: 1 CVHCSESRVRRYAVPKSTENRTDWGAGRLFIDLSGPFHDTSLGGNIFIMLCIDVFTRFKMVRFLKHKSDVTNALRDIIIDYFAPEGVKIGVIRTDGGGEWHGQFLS-FLSKLEIKRESTPPYTSQYNGTVERALGLLRDKTVVLLRGVMEGKSDRLWAEAMAYACGMWNRCISSSLDSGTSPYELWYGRRPTFDNIPPFGTVGY-YDQILNRQAVTWHLPTG---GTTHRRLPVRRTKTTGYTSTSSTLEVVPEEP---EEETPEIQPRDDLSERSEXXXXXXXSGEQLDP-EPTTMGEAQASSEWPQWKRVIAREMGGQTARGVWQVVERPKGKTVLGTRVVFKRKIDKDGRIEKYKCRLVAQGFRQVKGIHYEESSSPTPAQASISMVLGMIATLGWEARQLDVDMAYLEAEVEEEIYVELPEAYRDSRKHVGVLK--QAMYGLVHPGLLW*KTFGIELEVKGFQRSQGDPCVFRRIFHGVVVVVIVVYVDDLLVASATKRDGEQAVRDLCSCFPIKDLGKASYYLGCHITRDRNSGTLTFDQHQYIHTMAERFGVTKTR 1653
C+HC ++++ + PK + R + DL GP S+ G +I+ +D ++R+ M+ L K +V + L++ I G + V+R+D GGE+ G+ + FL + I + T PY+ Q NG ER L + T LL R WAEA A + NR G +PYELW +P +I FG Y Y Q R+ + G G +R R S T++ + P ++E E+Q +D+ +++ ++ E E + E +W EM W++V P GK V+G R FK K D G IE+YK RLVAQGF Q G Y+E+ +P +I L A +D+ A+L +E+E+Y+ PE Y ++ + V K +A+YGL W G L GF++S+ DPC+F+ +G + +IV YVDDLL+A + D + +++L + +K+LG+ +YYLG +I R + G +Q I + E+F + + +
Sbjct: 80 CIHCIKNKLSEFPYPKEAKYRATHPLDLVHSDLCGPMPTQSVSGKCYILTFVDDYSRYSMIYLLSKKDEVLSKLKEYIAMTRNKFGRTLKVLRSDNGGEYIGKEIEDFLKEQGIVHQLTVPYSPQLNGVSERKNRSLIEMTRCLLSEA--NLPQRFWAEAAMTATYLQNRLPIKP--KGKTPYELWTNHKPNLSHIRVFGCKAYAYIQKQKRRKLDSKAIEGIFLGYDYRSKGYRIYLGDNKIMISRTVKFIENPPPYAKKEAKELQKQDETTQQLVELELEHEENHSMEEGEINERTEMENPYEKQKWIESTKEEMESLQKNETWKLVTPPSGKKVIGCRWTFKAKYDSKGNIERYKARLVAQGFSQKFGTDYDETFAPVVTYTTIRTFLAAAAYKNLNVTHVDIKTAFLHGNLEDEVYMSQPEGYIEAGQEQKVCKLNKAIYGLKQAARAWHLKIGESLIKYGFEQSKADPCLFKFANNGNPMYIIV-YVDDLLIAGKDE-DIRKIIKELEEEYELKNLGEVNYYLGINIERTKE-GNFALNQKNKIEEIVEKFNLKEAK 634
BLAST of mRNA_H-elongata_contig84153.16029.1 vs. uniprot
Match: A0A8J5ZH56_9ROSI (Integrase catalytic domain-containing protein n=1 Tax=Gossypium anomalum TaxID=47600 RepID=A0A8J5ZH56_9ROSI) HSP 1 Score: 234 bits (597), Expect = 4.060e-62 Identity = 186/605 (30.74%), Postives = 285/605 (47.11%), Query Frame = 1
Query: 1 CVHCSESRVRRYAVPKSTENRTDWGAGRLFIDLSGPFHDTSLGGNIFIMLCIDVFTRFKMVRFLKHKSDVTNALRDIIIDYFAPEGVKIGVIRTDGGGEWHGQFLSFLSKLE-IKRESTPPYTSQYNGTVERALGLLRDKTVVLLRGVMEGKSDRLWAEAMAYACGMWNRCISSSLDSGTSPYELWYGRRPTFDNIPPFGTVGYYDQ-------------ILNRQAVTWHLPTGGTTHRRLPVRRTKTTGYTSTSSTLEVVP---EEPEEETPEIQPRDDLSERSEXXXXXXXSGEQLDP--EPTTMGEAQASSEWPQWKRVIAREMGGQTARGVWQVVERPKGKTVLGTRVVFKRKIDKDGRIE-KYKCRLVAQGFRQVKGIHYEESSSPTPAQASISMVLGMIATLGWEARQLDVDMAYLEAEVEEEIYVELPEAYRDSRK--HVGVLKQAMYGLVHPGLLW*KTFGIELEVKGFQRSQGDPCVFRRIFHGVVVVVIVVYVDDLLVASATKRDGEQAVRDLCSCFPIKDLGKASYYLGCHITRDRNSGTLTFDQHQYIHTMAERFGVTKTR-IIPPVAGGKALSKSDSPQTDAEVEEMRQIPY 1746
C HC + +R + N + + DL GP S GG +++ ID F+R FLK KSDV +A + I G +I +RTD G E+ + L K E I R T +T Q NG ER + +K +L KS WAEA + AC + NR +S +++ T P E+W G + ++ FG Y L +A +R++ + R T+ L + +E ++ EI+P +E ++ E +D EP+ EA + + +W + EM W +V+ PKGK + + VFK+K G E KYK RLVA+G+ QV G+ + + SP +SI +LG++A E QLDV +A+L E+EE+IY++ PE + S K +V +LK+++YGL W K F + F+RS D CV+ + + V +++YVDD+L+A+ K + + L F +KDLG A LG I RDR + L Q YI + RF + + + P+A LS + SPQ+D E+E M +PY
Sbjct: 469 CEHCVFGKQKRVRFTRGIHNTKET-LEYIHSDLWGPSRVPSRGGANYMLTFIDDFSRKVWAFFLKQKSDVFSAFKSWKIMIEKQTGKQIKYLRTDNGLEFCSDEFNRLCKSEGIVRHLTVRHTPQQNGVAERMNRTIMEKVRCMLSNANLPKS--FWAEAASTACFLINRSLSVAIEKKT-PQEVWSGNPANYSDLKIFGCPAYAHVNNGKLEPRSIKCVFLGYKAGVKGYKLWCPENRKVVISRDVVFDETAMLPNLSLKDCSNKENQKTKREIKPPKKYAE-ADLVAYALNVAEDIDANQEPSNYSEAISCEDSEKWMFAMQEEMESLHKNKTWDLVKLPKGKKTVRCKWVFKKKEGTPGVEEPKYKARLVAKGYSQVPGVDFTDVFSPVVKHSSIRALLGIVAMHDLELEQLDVKIAFLHGELEEDIYMQQPEGFTVSEKEDYVCLLKKSLYGLKQSPRQWYKRFDSFMTSHDFKRSSFDSCVYFKKNNNGSFVYLLLYVDDMLIAAKDKGEIRKVKAQLSEEFEMKDLGPAKKILGMEILRDRKTSKLYLSQKGYIEKLLCRFNMRSAKPVSTPLAAHFRLSSALSPQSDDEIEYMSHVPY 1068
BLAST of mRNA_H-elongata_contig84153.16029.1 vs. uniprot
Match: A0A8J6DEC3_9ROSI (Integrase catalytic domain-containing protein n=2 Tax=Gossypium anomalum TaxID=47600 RepID=A0A8J6DEC3_9ROSI) HSP 1 Score: 232 bits (592), Expect = 1.080e-61 Identity = 191/624 (30.61%), Postives = 293/624 (46.96%), Query Frame = 1
Query: 1 CVHCSESRVRRYAVPKSTENRTDWGAGRLFIDLSGPFHDTSLGGNIFIMLCIDVFTRFKMVRFLKHKSDVTNALRDIIIDYFAPEGVKIGVIRTDGGGEWHGQFLSFLSKLEIKRESTPPYTSQYNGTVERALGLLRDKTVVLLRGVMEGKSDRLWAEAMAYACGMWNRCISSSLDSGTSPYELWYGRRPT-FDNIPPFGTVGYY-------DQILNR---QAVT--------WHLPTG------GTTHRRLPVRRTKTTGYTSTSSTL-------EVVPEEPEEETPE----IQPRDDLSERSEXXXXXXXSGEQLDPE-PTTMGEAQASSEWPQWKRVIAREMGGQTARGVWQVVERPKGKTVLGTRVVFKRKIDKDGRIE-KYKCRLVAQGFRQVKGIHYEESSSPTPAQASISMVLGMIATLGWEARQLDVDMAYLEAEVEEEIYVELPEAYRDS--RKHVGVLKQAMYGLVHPGLLW*KTFGIELEVKGFQRSQGDPCVFRRIFHGVVVVVIVVYVDDLLVASATKRDGEQAVRDLCSCFPIKDLGKASYYLGCHITRDRNSGTLTFDQHQYIHTMAERFGVTK--TRIIPPVAGGKALSKSDSPQTDAEVEEMRQIPY 1746
C HC + +R + N T + D+ GP SLGG + + +D F+R V ++ K +V G KI +RTD GGE+ F + TP Q NG ER L +K +L GK + WAEA+ YA + NR SS+L+ T P E+W G+ T +D++ FG+ YY D + + +T W L T T P + TS+T EV+ +EP TPE +PR ++ + + +D + P T EA S E +WK + EM W++ + PKGK +G + VF +K + + +YK RLVA+G+ Q +GI Y + SP +SI ++L ++A L E QLDV A+L E+EEEIY+ PE Y D+ R V L +++YGL W K F + + + RS+ D CV+ + H + +++YVDD+L+AS ++++ ++ L F +KDLG+A LG I+RDR G L +Q QY+ + + FGV + + P+A L+ SP+T+ E E M ++PY
Sbjct: 463 CEHCVLGKQKRVKFGTAIHN-TKGILEYVHSDVWGPSKTPSLGGKHYFVTFVDDFSRRVWVYTMRTKDEVLGVFLKWKTMIENQTGKKIKRLRTDSGGEYKSD--PFFDVCQEYVRDTP----QQNGVAERMNRTLLEKVRCMLSNAGLGK--QFWAEAVTYAGHLVNRLPSSALERKT-PMEVWSGKPATDYDSLHVFGSTAYYHVKESKLDPRVKKALFMGITSGVKGFRLWCLDTKKMICSRDVTFDESPTLKKVADEDIQTSNTPQQELEVEEVLTQEPLS-TPEPVAVARPRREIRRPARFTDMVAYALPVVDDDIPVTYQEAMQSLESDKWKSAMDEEMQSLRKNNTWELAQLPKGKRAIGCKWVFAKKDGSPSKKDVRYKARLVAKGYAQKEGIDYNDVFSPVVKHSSIRILLALVAQLNLELAQLDVKTAFLHGELEEEIYMTQPEGYEDAGGRNWVCKLNKSLYGLKQSPRQWYKRFDSFMRRRKYTRSKYDNCVYLQKLHDRSFIYLLLYVDDMLIASNSQKEIDKLKAQLNEEFEMKDLGEAKKILGMEISRDRQRGKLCLNQKQYLKKVLQCFGVNEYTKHVSTPLASHLKLNAQLSPKTEEEREYMAKVPY 1075
BLAST of mRNA_H-elongata_contig84153.16029.1 vs. uniprot
Match: A0A8J5YWQ4_9ROSI (Integrase catalytic domain-containing protein n=1 Tax=Gossypium anomalum TaxID=47600 RepID=A0A8J5YWQ4_9ROSI) HSP 1 Score: 231 bits (588), Expect = 6.570e-61 Identity = 186/605 (30.74%), Postives = 283/605 (46.78%), Query Frame = 1
Query: 1 CVHCSESRVRRYAVPKSTENRTDWGAGRLFIDLSGPFHDTSLGGNIFIMLCIDVFTRFKMVRFLKHKSDVTNALRDIIIDYFAPEGVKIGVIRTDGGGEWHGQFLSFLSKLE-IKRESTPPYTSQYNGTVERALGLLRDKTVVLLRGVMEGKSDRLWAEAMAYACGMWNRCISSSLDSGTSPYELWYGRRPTFDNIPPFGTVGYYDQ-------------ILNRQAVTWHLPTGGTTHRRLPVRRTKTTGYTSTSSTLEVVP---EEPEEETPEIQPRDDLSERSEXXXXXXXSGEQLDP--EPTTMGEAQASSEWPQWKRVIAREMGGQTARGVWQVVERPKGKTVLGTRVVFKRKIDKDGRIE-KYKCRLVAQGFRQVKGIHYEESSSPTPAQASISMVLGMIATLGWEARQLDVDMAYLEAEVEEEIYVELPEAYRDSRK--HVGVLKQAMYGLVHPGLLW*KTFGIELEVKGFQRSQGDPCVFRRIFHGVVVVVIVVYVDDLLVASATKRDGEQAVRDLCSCFPIKDLGKASYYLGCHITRDRNSGTLTFDQHQYIHTMAERFGVTKTR-IIPPVAGGKALSKSDSPQTDAEVEEMRQIPY 1746
C HC + +R + N + + DL GP S GG +++ ID F+R FLK KSDV +A + I G +I +RTD G E+ + L K E I R T +T Q NG ER + +K +L KS WAEA + AC + NR S +++ T P E+W G + ++ FG Y L +A +R++ + R T+ L + +E ++ EI+P +E ++ E +D EP+ EA + + +W + EM W +V+ PKGK + + VFK+K G E KYK RLVA+G+ QV G+ + + SP +SI +LG++A E QLDV A+L E+EE+IY++ PE + S K +V +LK+++YGL W K F + F+RS D CV+ + + V +++YVDD+L+A+ K + + L F +KDLG A LG I RDR + L Q YI + RF + + + P+A LS + SPQ+D E+E M +PY
Sbjct: 606 CEHCVFGKQKRVRFTRGIHNTKET-LEYIHSDLWGPSRVPSRGGANYMLTFIDDFSRKVWAFFLKQKSDVFSAFKSWKIMIEKQTGKQIKYLRTDNGLEFCSDEFNRLCKSEGIVRHLTVRHTPQQNGVAERMNRTIMEKVRCMLSDANLPKS--FWAEAASTACFLINRSPSVAIEKKT-PQEVWSGNPANYSDLKIFGCPAYAHVNNGKLEPRSIKCVFLGYKAGVKGYKLWCPENRKVVISRDVVFDETAMLPNLSLKDSSNKENQKTKREIKPPKKYAE-ADLVAYALNVAEDIDANQEPSNYSEAISCEDSEKWMFAMQEEMESLHKNKTWDLVKLPKGKKTVRCKWVFKKKEGTPGVEEPKYKARLVAKGYSQVPGVDFTDVFSPVVKHSSIRALLGIVAMHDLELEQLDVKTAFLHGELEEDIYMQQPEGFTVSEKEDYVCLLKKSLYGLKQSPRQWYKRFDSFMTSHDFKRSSFDSCVYFKKNNDGSFVYLLLYVDDMLIATKDKGEIRKVKAQLSEEFEMKDLGPAKKILGMEILRDRKTSKLYLSQKGYIEKLLCRFNMRSAKPVSTPLAAHFRLSSALSPQSDDEIEYMSHVPY 1205
BLAST of mRNA_H-elongata_contig84153.16029.1 vs. uniprot
Match: A0A8J5XRB5_9ROSI (Integrase catalytic domain-containing protein n=1 Tax=Gossypium anomalum TaxID=47600 RepID=A0A8J5XRB5_9ROSI) HSP 1 Score: 226 bits (577), Expect = 6.630e-61 Identity = 190/652 (29.14%), Postives = 294/652 (45.09%), Query Frame = 1
Query: 1 CVHCSESRVRRYAVPKSTENRTDWGAGRLFIDLSGPFHDTSLGGNIFIMLCIDVFTRFKMVRFLKHKSDVTNALRDIIIDYFAPEGVKIGVIRTDGGGEWHGQ-FLSFLSKLEIKRESTPPYTSQYNGTVERALGLLRDKTVVLLRGVMEGKSDRLWAEAMAYACGMWNRCISSSLDSGTSPYELWYGRRPT-FDNIPPFGTVGYYD---------------------------------QILNRQAVTWH------------LPTGGTTH--------------RRLPVRRTKTTGYTSTSSTLEVVPEEPEEETPE----IQPRDDLSERSEXXXXXXXSGEQLDPE-PTTMGEAQASSEWPQWKRVIAREMGGQTARGVWQVVERPKGKTVLGTRVVFKRKIDKDGRIEKYKCRLVAQGFRQVKGIHYEESSSPTPAQASISMVLGMIATLGWEARQLDVDMAYLEAEVEEEIYVELPEAYRDS--RKHVGVLKQAMYGLVHPGLLW*KTFGIELEVKGFQRSQGDPCVFRRIFHGVVVVVIVVYVDDLLVASATKRDGEQAVRDLCSCFPIKDLGKASYYLGCHITRDRNSGTLTFDQHQYIHTMAERFGVTKT--RIIPPVAGGKALSKSDSPQTDAEVEEMRQIPY 1746
C HC + +R + N T + D+ GP SLGG + + +D F+R V ++ K +V G KI +RTD GGE+ F + I R T T Q NG ER L +K +L GK + WAEA+ YA + NR SS+L+ T P E+W G+ T +D++ FG+ YY +++ + VT+ + T T R PV ++ + EV+ +EP TPE +PR ++ + + +D + P T EA S E +WK + EM W++ + PKGK +G + VF +K D R YK RLVA+ + Q +GI Y + SP +SI ++L ++A L E QLDV A+L +E+EE+IY+ PE Y D+ R V L +++YGL W K F + + + RS+ D CV+ + H + +++YVDD+L+AS ++++ ++ L F +KDLG+A LG I+RDR G L Q QY+ + + FGV + + P+A L+ SP+T+ E E M ++PY
Sbjct: 31 CEHCVLGKQKRVKFGTAIHN-TKGILEYVHSDVWGPSKTPSLGGKHYFVTFVDDFSRRVWVYTMRTKDEVLGVFLKWKTMIENQTGKKIKRLRTDNGGEYKSDPFFDVCQEYGIVRHFTVRDTPQQNGVAERMNRTLLEKVRCMLSNAGLGK--QFWAEAVTYAGHLVNRLPSSALERKT-PMEVWSGKPATDYDSLHVFGSTAYYHVKESKLDPRAKKALFMGITSGVKGFRLWCLDTKKMICSRDVTFDESPTLKKVTDEDIQTSDTPQQVECTLKQVEFEQVRICPVNKSNSPATMEELEVEEVLTQEPLS-TPEPVAVARPRREIHRPARFTDMVAYALPVVDDDIPVTYQEAMQSLESDKWKSAMDEEMQSLRKNNTWELAQLPKGKRAIGCKWVFAKK---DVR---YKARLVAKSYAQKEGIDYNDVFSPVVKHSSIRILLALVAQLNLELAQLDVKTAFLHSELEEKIYMTQPEGYEDTGGRNWVCKLNKSLYGLKQSPRQWYKRFDSFMRRQKYTRSKYDNCVYLQKLHDRSFIYLLLYVDDMLIASKSQKEIDKLKAQLNEEFEMKDLGEAKMILGMEISRDRQRGKLCLKQKQYLKKVLQCFGVNENTKHVSIPLASHLKLNAQLSPKTEEEKEYMAKVPY 671
BLAST of mRNA_H-elongata_contig84153.16029.1 vs. uniprot
Match: UPI001C97B5BC (DDE-type integrase/transposase/recombinase n=2 Tax=Actinobacteria TaxID=201174 RepID=UPI001C97B5BC) HSP 1 Score: 228 bits (580), Expect = 1.000e-60 Identity = 178/635 (28.03%), Postives = 283/635 (44.57%), Query Frame = 1
Query: 1 CVHCSESRVRRYAVPKSTENRTDWGAGRLFIDLSGPFHDTSLGGNIFIMLCIDVFTRFKMVRFLKHKSDVTNALRDIIIDYFAPEGVKIGVIRTDGGGEW-HGQFLSFLSKLEIKRESTPPYTSQYNGTVERALGLLRDKTVVLLRGVMEGKSDRLWAEAMAYACGMWNRCISSSLDSGTSPYELWYGRRPTFDNIPPFGTVGYYDQILNRQAVTWHLPTGGTTHRRLPVRRTKTTGY---------------------------------------TSTSSTLEVVPEEPEEETPEIQPRDDLSERS----------EXXXXXXXSGEQLDPEPTTMGEAQASSEWPQWKRVIAREMGGQTARGVWQVVERPKGKTVLGTRVVFKRKIDKDGRIEKYKCRLVAQGFRQVKGIHYEESSSPTPAQASISMVLGMIATLGWEARQLDVDMAYLEAEVEEEIYVELPEAYRDSRKHVGV--LKQAMYGLVHPGLLW*KTFGIELEVKGFQRSQGDPCVFRRIFHGVVVVVIVVYVDDLLVASATKRDGEQAVRDLCSCFPIKDLGKASYYLGCHITRDRNSGTLTFDQHQYIHTMAERFGVTKT-RIIPPVAGGKALSKSDSPQTDAEVEEMRQIPY 1746
C C ++ + +E D G + D+ GP + + GG + + D +R V +KHKS+ ++ + G I +R+D GGE+ +FL L++ I + TPP T Q NG ER L D +L S W A+ A + NR S S+ +PYE+WYG++P+ ++ +G+V Y + N+ A + P ++ GY ST + P E E QP S E ++ +PTT A + +W++ + EM + VW +V P+G +G + ++KRKI DG++E YK RLVA+G+ Q +G+ YE++ SP SI ++L + A +E Q+DV A+L +EE++Y+E P+ + S + V L++++YGL W F ++ GF ++ +PCV++++ G V +V+YVDD+L+ L S F +KDLG A+Y LG I RDR+ L Q YI + +RF + + R + P G LSK SP+TD E E M +IPY
Sbjct: 158 CEPCLMGKMTKSPFTGHSERAGDI-LGLIHSDVCGPLNKVARGGFTYFITFTDDHSRLGTVYLMKHKSESFEKFKEYRAEVEKQTGKSIKALRSDRGGEYLTTEFLDHLTEAGILSQWTPPGTPQLNGVSERRNRTLMDMVRSMLS--YTDMSISFWGYALETAAYLLNRVPSKSVPK--TPYEMWYGKKPSLKHLRVWGSVAY---VKNQNATKLEARSSKCRFVGYPK---ESLGYYFYHTSEEKVFVSKFAKFLEKEFIQEGGKGQVIDLEELSESTQINTDTTPAPVEAEPTGTQPLRRSGRVSAPPVRYGYLHEMREELFLGDKEHPDDPTTYEGAMLDIDSTRWQQAMESEMDSMYSNQVWTLVNPPEGIVPIGCKWIYKRKIGSDGKVETYKARLVAKGYNQKQGVDYEDTFSPVAMLKSIRILLAIAAHYDYEICQMDVKTAFLNGNIEEDLYMEQPKGFVSSGEDHKVCKLQRSIYGLKQASRSWNIRFNEAVKSFGFLQNMDEPCVYKKV-SGSAVTFLVLYVDDILIIGNDVGMISSIKLWLSSNFSMKDLGDATYILGIKIYRDRSKRLLGLSQSMYIDKILKRFSMENSKRGLLPFRHGIHLSKDMSPKTDQEREHMSKIPY 780
BLAST of mRNA_H-elongata_contig84153.16029.1 vs. uniprot
Match: A0A438HJ91_VITVI (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Vitis vinifera TaxID=29760 RepID=A0A438HJ91_VITVI) HSP 1 Score: 228 bits (582), Expect = 2.220e-60 Identity = 175/653 (26.80%), Postives = 291/653 (44.56%), Query Frame = 1
Query: 1 CVHCSESRVRRYAVPKSTENRTDWGAGRLFIDLSGPFHDTSLGGNIFIMLCIDVFTRFKMVRFLKHKSDVTNALRDIIIDYFAPEGVKIGVIRTDGGGEWHGQ-----------FLSFLSKLEIKRESTPPYTSQYNGTVERALGLLRDKTVVLLRGVMEGKS--DRLWAEAMAYACGMWNRCISSSLDSGTSPYELWYGRRPTFDNIPPFGT------VGYYDQ----------------------------ILNRQAVTWHLPTGGTTHRRLPVRRTKTTGYTSTSSTLEVVP--------------EEPEEETPEIQPRDDLSERSEXXXXXXXSGEQ-------LDPEPTTMGEAQASSEWPQWKRVIAREMGGQTARGVWQVVERPKGKTVLGTRVVFKRKIDKDGRIEKYKCRLVAQGFRQVKGIHYEESSSPTPAQASISMVLGMIATLGWEARQLDVDMAYLEAEVEEEIYVELPEAY--RDSRKHVGVLKQAMYGLVHPGLLW*KTFGIELEVKGFQRSQGDPCVFRRIFHGVVVVVIVVYVDDLLVASATKRDGEQAVRDLCSCFPIKDLGKASYYLGCHITRDRNSGTLTFDQHQYIHTMAERFGVTKTRI-IPPVAGGKALSKSDSPQTDAEVEEMRQIPY 1746
C+ C + + + K NR + D+ GPF S G + + ID ++R+ + + KS + ++ + KI +R+D GGE++G+ F +L + I + T P T NG ER L+D ++R ++ + + LW EA+ A + NR S ++ +PYELW ++P+ ++ +G +YD + + V + G H T TLE+ P ++P+E ++ R ER Q L+ +P ++ + + SS +W + EM GVW ++E PKG +G + +FK K D G I +YK RLVA+GF Q +GI Y+E+ SP ++ S +++ ++A E Q+DV A+L ++E IY+ PE + +DS++ V LK+++YGL W + F + GF+ + D C++ + F G +++V+YVDD+L+AS+ + R L S F +KDLG AS+ LG I RDR+ G L Q YI + RFG++ PVA G S P+ + E ++M + PY
Sbjct: 263 CIECIKGKQTN--MRKKNANRCSDVLELIHTDICGPFPTPSWNGQQYFITFIDDYSRYGYLYLIHEKSQSLDVFKNFKAEVENQLSKKIKAVRSDRGGEYYGRYDGSGEQRPGPFAKYLMECGIVPQYTMPGTPSQNGVAERRNRTLKD----MVRSMISHSTLPESLWGEAIKTAVYILNRVPSKAV--AKTPYELWTSKKPSIRHLHVWGYSERSRGFKFYDPSTRSFFETGNAKFIEDVELSGREPLRKVVFEEEFVNIPIIAAGHGHIMFNDTIQNVQSITGIQDTLEIPPAQVMEPIQVHQEVTQQPQEPQVQVPLRRSTRERRSTISDDYVVYLQEHEFDMGLEDDPISVSQVKQSSNSEKWIEAMKDEMKSMKDNGVWDLIELPKGVKPIGCKWIFKTKRDSKGNIVRYKARLVAKGFTQKEGIDYKETFSPVSSKDSFRIIMALVAHYDLELHQMDVKTAFLNGNIDETIYMVQPENFESKDSKQLVCRLKRSIYGLKQASRQWYRKFDQVITSFGFKENTVDQCIYLK-FSGSKFIILVLYVDDILLASSDVGLLHETKRFLSSKFDMKDLGNASFVLGIQIHRDRSRGILGLSQKAYIDKVLSRFGMSNCAPGDTPVAKGDKFSLHQCPKNELEKKDMERFPY 906 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig84153.16029.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig84153.16029.1 >prot_H-elongata_contig84153.16029.1 ID=prot_H-elongata_contig84153.16029.1|Name=mRNA_H-elongata_contig84153.16029.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=395bp MLCIDVFTRFKMVRFLKHKSDVTNALRDIIIDYFAPEGVKIGVIRTDGGGback to top mRNA from alignment at H-elongata_contig84153:13..2374- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig84153.16029.1 ID=mRNA_H-elongata_contig84153.16029.1|Name=mRNA_H-elongata_contig84153.16029.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=2362bp|location=Sequence derived from alignment at H-elongata_contig84153:13..2374- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig84153:13..2374- >mRNA_H-elongata_contig84153.16029.1 ID=mRNA_H-elongata_contig84153.16029.1|Name=mRNA_H-elongata_contig84153.16029.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=2370bp|location=Sequence derived from alignment at H-elongata_contig84153:13..2374- (Himanthalia elongata Himel1 dioecious)back to top |