mRNA_H-elongata_contig84145.16027.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig84145.16027.1
Unique NamemRNA_H-elongata_contig84145.16027.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
[Close]
BLAST of mRNA_H-elongata_contig84145.16027.1 vs. uniprot
Match: A0A6H5JUX7_9PHAE (DDE Tnp4 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUX7_9PHAE)

HSP 1 Score: 139 bits (351), Expect = 1.660e-38
Identity = 59/89 (66.29%), Postives = 76/89 (85.39%), Query Frame = 1 
Query:    1 IVDNGYHKWRVTQEPTKYPLNKEEVNYIKTLESVRKEVECFFGIIKGRFRILKLPTLYRRKESIDNVFFTCCILHNMLHAYNGLDQLEE 267
            + DNGYHKW++  EP+KYPL+++++ + K LESVRK+VECFFGI+KGRFRILKL   Y+ +E IDNVFFTCCILHNMLH ++G+DQL E
Sbjct:  174 LDDNGYHKWQILIEPSKYPLSEDDLLFSKRLESVRKDVECFFGILKGRFRILKLAMAYQSQERIDNVFFTCCILHNMLHTFDGMDQLVE 262
[Close]
BLAST of mRNA_H-elongata_contig84145.16027.1 vs. uniprot
Match: A0A6H5JHI0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHI0_9PHAE)

HSP 1 Score: 139 bits (349), Expect = 1.150e-37
Identity = 58/89 (65.17%), Postives = 73/89 (82.02%), Query Frame = 1 
Query:    1 IVDNGYHKWRVTQEPTKYPLNKEEVNYIKTLESVRKEVECFFGIIKGRFRILKLPTLYRRKESIDNVFFTCCILHNMLHAYNGLDQLEE 267
            +VDNGYHKW++  EPTKYPL++ ++ + K LESVRK+VECFFGI+KG FRI K+   Y  +E IDNVFFTCCILHNMLH ++G+DQL E
Sbjct:  269 LVDNGYHKWKILMEPTKYPLSENDILFSKRLESVRKDVECFFGILKGCFRIQKVAMAYHEQERIDNVFFTCCILHNMLHTFDGMDQLVE 357
[Close]
BLAST of mRNA_H-elongata_contig84145.16027.1 vs. uniprot
Match: D7FSK2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FSK2_ECTSI)

HSP 1 Score: 135 bits (340), Expect = 3.160e-37
Identity = 57/89 (64.04%), Postives = 74/89 (83.15%), Query Frame = 1 
Query:    1 IVDNGYHKWRVTQEPTKYPLNKEEVNYIKTLESVRKEVECFFGIIKGRFRILKLPTLYRRKESIDNVFFTCCILHNMLHAYNGLDQLEE 267
            +VDNGYHKW++  EP+KYPL++ ++ + K LESVRK+VECFFGI+KGR RIL L   ++ +E IDNVFFTCCILHNMLH ++G+DQL E
Sbjct:  129 LVDNGYHKWQILIEPSKYPLSENDLLFSKRLESVRKDVECFFGILKGRLRILMLAMAFQSQERIDNVFFTCCILHNMLHTFDGMDQLVE 217
[Close]
BLAST of mRNA_H-elongata_contig84145.16027.1 vs. uniprot
Match: A0A6H5KNX4_9PHAE (DDE Tnp4 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KNX4_9PHAE)

HSP 1 Score: 136 bits (343), Expect = 1.950e-36
Identity = 59/89 (66.29%), Postives = 75/89 (84.27%), Query Frame = 1 
Query:    1 IVDNGYHKWRVTQEPTKYPLNKEEVNYIKTLESVRKEVECFFGIIKGRFRILKLPTLYRRKESIDNVFFTCCILHNMLHAYNGLDQLEE 267
            +VDNGYHKW++  EP+KYPL++ ++ + K LESVRK+VECFFGI+KGRFRILKL   Y+ +E IDNVFFTC ILHNMLH ++G+DQL E
Sbjct:  284 LVDNGYHKWQILIEPSKYPLSENDLLFSKRLESVRKDVECFFGILKGRFRILKLAMEYQSQERIDNVFFTCYILHNMLHTFDGMDQLVE 372
[Close]
BLAST of mRNA_H-elongata_contig84145.16027.1 vs. uniprot
Match: A0A6H5JTC6_9PHAE (DDE Tnp4 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JTC6_9PHAE)

HSP 1 Score: 130 bits (328), Expect = 5.870e-36
Identity = 55/89 (61.80%), Postives = 71/89 (79.78%), Query Frame = 1 
Query:    1 IVDNGYHKWRVTQEPTKYPLNKEEVNYIKTLESVRKEVECFFGIIKGRFRILKLPTLYRRKESIDNVFFTCCILHNMLHAYNGLDQLEE 267
            +VDNGYHKW     P+KYP+++ ++ + K LESVRK+VECFFGI+KG FRILKL   Y ++E IDNVFFTCCILHNMLH+Y+   ++EE
Sbjct:   86 LVDNGYHKWVTLIPPSKYPIDQNDLAFSKRLESVRKDVECFFGIVKGLFRILKLSIPYHKQEDIDNVFFTCCILHNMLHSYDNKSEMEE 174
[Close]
BLAST of mRNA_H-elongata_contig84145.16027.1 vs. uniprot
Match: A0A6H5JBE2_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JBE2_9PHAE)

HSP 1 Score: 134 bits (338), Expect = 1.330e-35
Identity = 58/92 (63.04%), Postives = 76/92 (82.61%), Query Frame = 1 
Query:    1 IVDNGYHKWRVTQEPTKYPLNKEEVNYIKTLESVRKEVECFFGIIKGRFRILKLPTLYRRKESIDNVFFTCCILHNMLHAYNGLDQLEEGID 276
            IVDNGYHKWR+  EP+KYPL++ ++ + K LESVRK+VECFFGI+K RFRILKL   Y+++E +D VFFTCCILHNMLH ++G+  LEE ++
Sbjct:  298 IVDNGYHKWRMLIEPSKYPLSEADLLFSKRLESVRKDVECFFGILKMRFRILKLAMTYQKQERLDYVFFTCCILHNMLHTHDGMGGLEEDVN 389
[Close]
BLAST of mRNA_H-elongata_contig84145.16027.1 vs. uniprot
Match: A0A6H5JAU4_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JAU4_9PHAE)

HSP 1 Score: 133 bits (335), Expect = 5.130e-35
Identity = 56/89 (62.92%), Postives = 72/89 (80.90%), Query Frame = 1 
Query:    1 IVDNGYHKWRVTQEPTKYPLNKEEVNYIKTLESVRKEVECFFGIIKGRFRILKLPTLYRRKESIDNVFFTCCILHNMLHAYNGLDQLEE 267
            +VDNGYHKW     P+KYP+++ ++ + K LESVRK+VECFFGI+KGRFRILKL   Y ++E IDNVFFTCCILHNMLH+Y+   ++EE
Sbjct:  327 LVDNGYHKWVTLIPPSKYPIDQNDLAFSKRLESVRKDVECFFGIVKGRFRILKLSIPYHKQEDIDNVFFTCCILHNMLHSYDNKSEMEE 415
[Close]
BLAST of mRNA_H-elongata_contig84145.16027.1 vs. uniprot
Match: A0A6H5JZL5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZL5_9PHAE)

HSP 1 Score: 125 bits (315), Expect = 6.650e-35
Identity = 54/89 (60.67%), Postives = 71/89 (79.78%), Query Frame = 1 
Query:    1 IVDNGYHKWRVTQEPTKYPLNKEEVNYIKTLESVRKEVECFFGIIKGRFRILKLPTLYRRKESIDNVFFTCCILHNMLHAYNGLDQLEE 267
            I     + W++  EP+KYPL++ ++ ++K LESVRK+VECFFGI+KGRFRILKL   Y+ +E IDNVFFTCCILHNMLH ++G+DQL E
Sbjct:   10 IALTASNNWQILIEPSKYPLSENDLLFLKRLESVRKDVECFFGILKGRFRILKLAMAYQSQERIDNVFFTCCILHNMLHTFDGMDQLVE 98
[Close]
BLAST of mRNA_H-elongata_contig84145.16027.1 vs. uniprot
Match: A0A6H5JQM6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQM6_9PHAE)

HSP 1 Score: 127 bits (318), Expect = 2.790e-34
Identity = 54/92 (58.70%), Postives = 70/92 (76.09%), Query Frame = 1 
Query:    1 IVDNGYHKWRVTQEPTKYPLNKEEVNYIKTLESVRKEVECFFGIIKGRFRILKLPTLYRRKESIDNVFFTCCILHNMLHAYNGLDQLEEGID 276
            I+DN YH+W     P+KYP + ++  + + LESVRK+VECFFGI+KGRFRILKL   Y ++E IDN+FFTCCILHNMLH ++GLD  +E  D
Sbjct:   86 IMDNWYHEWVTLIAPSKYPQSNKDTAFSRHLESVRKDVECFFGILKGRFRILKLRMPYHKREYIDNIFFTCCILHNMLHTFDGLDVFDENTD 177
[Close]
BLAST of mRNA_H-elongata_contig84145.16027.1 vs. uniprot
Match: A0A6H5JXJ4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JXJ4_9PHAE)

HSP 1 Score: 120 bits (302), Expect = 1.730e-33
Identity = 53/76 (69.74%), Postives = 64/76 (84.21%), Query Frame = 1 
Query:   40 EPTKYPLNKEEVNYIKTLESVRKEVECFFGIIKGRFRILKLPTLYRRKESIDNVFFTCCILHNMLHAYNGLDQLEE 267
            EPTKYPL++ ++ + K LESVRK+VECFFGI+KGRFRILKL   Y  +E IDNVFFTCCILHNMLH ++G+DQL E
Sbjct:    2 EPTKYPLSENDILFSKRLESVRKDVECFFGILKGRFRILKLVMAYHEQERIDNVFFTCCILHNMLHIFDGMDQLVE 77
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig84145.16027.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JUX7_9PHAE1.660e-3866.29DDE Tnp4 domain-containing protein n=1 Tax=Ectocar... [more]
A0A6H5JHI0_9PHAE1.150e-3765.17Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FSK2_ECTSI3.160e-3764.04Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KNX4_9PHAE1.950e-3666.29DDE Tnp4 domain-containing protein n=1 Tax=Ectocar... [more]
A0A6H5JTC6_9PHAE5.870e-3661.80DDE Tnp4 domain-containing protein n=1 Tax=Ectocar... [more]
A0A6H5JBE2_9PHAE1.330e-3563.04Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JAU4_9PHAE5.130e-3562.92Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JZL5_9PHAE6.650e-3560.67Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JQM6_9PHAE2.790e-3458.70Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JXJ4_9PHAE1.730e-3369.74Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig84145contigH-elongata_contig84145:1683..2415 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score136.3
Seed ortholog evalue7.1e-30
Seed eggNOG ortholog2880.D7FSK2
EggNOG free text desc.Plant transposon protein
EggNOG OGs2E2RF@1,2S9YA@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons2
Model size282
Cds size282
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931246.5485597-CDS-H-elongata_contig84145:1682..17061622931246.5485597-CDS-H-elongata_contig84145:1682..1706Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig84145 1683..1706 +
1691679758.1142979-CDS-H-elongata_contig84145:1682..17061691679758.1142979-CDS-H-elongata_contig84145:1682..1706Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig84145 1683..1706 +
1622931246.5668747-CDS-H-elongata_contig84145:2157..24151622931246.5668747-CDS-H-elongata_contig84145:2157..2415Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig84145 2158..2415 +
1691679758.131148-CDS-H-elongata_contig84145:2157..24151691679758.131148-CDS-H-elongata_contig84145:2157..2415Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig84145 2158..2415 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig84145.16027.1prot_H-elongata_contig84145.16027.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig84145 1683..2415 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig84145.16027.1

>prot_H-elongata_contig84145.16027.1 ID=prot_H-elongata_contig84145.16027.1|Name=mRNA_H-elongata_contig84145.16027.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=94bp
IVDNGYHKWRVTQEPTKYPLNKEEVNYIKTLESVRKEVECFFGIIKGRFR
ILKLPTLYRRKESIDNVFFTCCILHNMLHAYNGLDQLEEGIDCA
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mRNA from alignment at H-elongata_contig84145:1683..2415+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig84145.16027.1 ID=mRNA_H-elongata_contig84145.16027.1|Name=mRNA_H-elongata_contig84145.16027.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=733bp|location=Sequence derived from alignment at H-elongata_contig84145:1683..2415+ (Himanthalia elongata Himel1 dioecious)
ATTGTCGACAACGGGTACCACAAGGTGAGAAAATAATGAAGAGCTTCGAA
CGCGTCACGAGAAAGACATGTAATAATTGTTATTTAAAATAAACTTAAAC
TCATTCCAACCCTTCGAATAGTTGTGAATTGGGTCCAAATAGAGACAACA
ACAAATCCTTTAAAACAATTGCCCTTGTCACGGGGTCAAATCTCAGCACA
ATTTTGATACTGGTTAAACAAACGCTAGGTTTTGGAAAATTTGTCTTTTG
TTTTTATGCGTTCACTGCTACTTGTCATTGTATCATATTTTATCCTATGT
TAACCGCTAGTAGATTGTTTCTAGAGGTCCATTTAACCGTGAAGAGCCGT
AAAAATACTGGGCTCCTTTAGTCTAGTCGGGAATGTTACTATGCATGCAG
CAGCCTCAACGCTAACACCGCCTCTCCCCTCTTCGACACCTTGATGCTCA
CCATTTTGTATTTCGTATACCGTAGTGGCGGGTCACCCAAGAACCCACCA
AGTACCCGCTCAACAAGGAGGAAGTCAATTACATCAAGACACTGGAAAGT
GTTCGCAAGGAGGTCGAGTGCTTCTTCGGAATCATCAAAGGGCGTTTCCG
GATCCTCAAGCTCCCCACTCTCTACCGCAGGAAAGAGTCGATAGACAATG
TGTTCTTCACGTGCTGCATTTTGCACAACATGCTTCACGCGTACAACGGA
CTGGATCAGCTGGAGGAAGGCATTGACTGTGCA
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Coding sequence (CDS) from alignment at H-elongata_contig84145:1683..2415+

>mRNA_H-elongata_contig84145.16027.1 ID=mRNA_H-elongata_contig84145.16027.1|Name=mRNA_H-elongata_contig84145.16027.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=564bp|location=Sequence derived from alignment at H-elongata_contig84145:1683..2415+ (Himanthalia elongata Himel1 dioecious)
ATTGTCGACAACGGGTACCACAAGATTGTCGACAACGGGTACCACAAGTG
GCGGGTCACCCAAGAACCCACCAAGTACCCGCTCAACAAGGAGGAAGTCA
ATTACATCAAGACACTGGAAAGTGTTCGCAAGGAGGTCGAGTGCTTCTTC
GGAATCATCAAAGGGCGTTTCCGGATCCTCAAGCTCCCCACTCTCTACCG
CAGGAAAGAGTCGATAGACAATGTGTTCTTCACGTGCTGCATTTTGCACA
ACATGCTTCACGCGTACAACGGACTGGATCAGCTGGAGGAAGGCATTGAC
TGTGCATGGCGGGTCACCCAAGAACCCACCAAGTACCCGCTCAACAAGGA
GGAAGTCAATTACATCAAGACACTGGAAAGTGTTCGCAAGGAGGTCGAGT
GCTTCTTCGGAATCATCAAAGGGCGTTTCCGGATCCTCAAGCTCCCCACT
CTCTACCGCAGGAAAGAGTCGATAGACAATGTGTTCTTCACGTGCTGCAT
TTTGCACAACATGCTTCACGCGTACAACGGACTGGATCAGCTGGAGGAAG
GCATTGACTGTGCA
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