mRNA_H-elongata_contig84144.16026.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig84144.16026.1
Unique NamemRNA_H-elongata_contig84144.16026.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig84144.16026.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig84144contigH-elongata_contig84144:1585..2058 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size475
Cds size474
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931246.4909084-CDS-H-elongata_contig84144:1584..20581622931246.4909084-CDS-H-elongata_contig84144:1584..2058Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig84144 1585..2058 +
1691679758.10257-CDS-H-elongata_contig84144:1584..20581691679758.10257-CDS-H-elongata_contig84144:1584..2058Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig84144 1585..2058 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig84144.16026.1prot_H-elongata_contig84144.16026.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig84144 1585..2058 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig84144.16026.1

>prot_H-elongata_contig84144.16026.1 ID=prot_H-elongata_contig84144.16026.1|Name=mRNA_H-elongata_contig84144.16026.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=158bp
VNEDIYGNGDVYKEENGDEGGEKRGRGFSPSDCTGAAQDARGEVMPTGNQ
HPKSQDPTLQRKRLTMEITKTQGRAARVESRREEERRSAIRRRCHSARGI
ISADGRWRLQIARSSGCKSQRLPDHVVSRGEPGRQGWKEETMTGTGTRME
TGTRTRTG
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mRNA from alignment at H-elongata_contig84144:1585..2058+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig84144.16026.1 ID=mRNA_H-elongata_contig84144.16026.1|Name=mRNA_H-elongata_contig84144.16026.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=474bp|location=Sequence derived from alignment at H-elongata_contig84144:1585..2058+ (Himanthalia elongata Himel1 dioecious)
GTGAATGAGGACATATACGGGAATGGGGACGTGTATAAGGAAGAGAACGG
TGACGAGGGTGGAGAGAAGAGAGGGCGCGGGTTTTCACCATCTGATTGTA
CAGGTGCGGCGCAGGACGCGAGAGGGGAGGTGATGCCAACGGGTAACCAG
CATCCAAAATCGCAAGACCCGACGCTCCAACGAAAACGTCTTACGATGGA
GATTACCAAAACCCAGGGACGGGCAGCGAGGGTGGAATCGAGAAGGGAAG
AGGAACGAAGAAGTGCAATAAGAAGGCGGTGTCATTCTGCACGCGGTATC
ATCTCTGCAGACGGGAGATGGCGCTTGCAGATAGCCAGGAGCTCCGGGTG
CAAGTCCCAGCGCCTGCCCGACCATGTCGTATCGAGGGGAGAACCGGGCC
GACAGGGCTGGAAGGAAGAAACGATGACGGGAACAGGGACGAGGATGGAG
ACGGGGACGAGGACGAGGACGGGG
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Coding sequence (CDS) from alignment at H-elongata_contig84144:1585..2058+

>mRNA_H-elongata_contig84144.16026.1 ID=mRNA_H-elongata_contig84144.16026.1|Name=mRNA_H-elongata_contig84144.16026.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=948bp|location=Sequence derived from alignment at H-elongata_contig84144:1585..2058+ (Himanthalia elongata Himel1 dioecious)
GTGAATGAGGACATATACGGGAATGGGGACGTGTATAAGGAAGAGAACGG
TGACGAGGGTGGAGAGAAGAGAGGGCGCGGGTTTTCACCATCTGATTGTA
CAGGTGCGGCGCAGGACGCGAGAGGGGAGGTGATGCCAACGGGTAACCAG
CATCCAAAATCGCAAGACCCGACGCTCCAACGAAAACGTCTTACGATGGA
GATTACCAAAACCCAGGGACGGGCAGCGAGGGTGGAATCGAGAAGGGAAG
AGGAACGAAGAAGTGCAATAAGAAGGCGGTGTCATTCTGCACGCGGTATC
ATCTCTGCAGACGGGAGATGGCGCTTGCAGATAGCCAGGAGCTCCGGGTG
CAAGTCCCAGCGCCTGCCCGACCATGTCGTATCGAGGGGAGAACCGGGCC
GACAGGGCTGGAAGGAAGAAACGATGACGGGAACAGGGACGAGGATGGAG
ACGGGGACGAGGACGAGGACGGGGGTGAATGAGGACATATACGGGAATGG
GGACGTGTATAAGGAAGAGAACGGTGACGAGGGTGGAGAGAAGAGAGGGC
GCGGGTTTTCACCATCTGATTGTACAGGTGCGGCGCAGGACGCGAGAGGG
GAGGTGATGCCAACGGGTAACCAGCATCCAAAATCGCAAGACCCGACGCT
CCAACGAAAACGTCTTACGATGGAGATTACCAAAACCCAGGGACGGGCAG
CGAGGGTGGAATCGAGAAGGGAAGAGGAACGAAGAAGTGCAATAAGAAGG
CGGTGTCATTCTGCACGCGGTATCATCTCTGCAGACGGGAGATGGCGCTT
GCAGATAGCCAGGAGCTCCGGGTGCAAGTCCCAGCGCCTGCCCGACCATG
TCGTATCGAGGGGAGAACCGGGCCGACAGGGCTGGAAGGAAGAAACGATG
ACGGGAACAGGGACGAGGATGGAGACGGGGACGAGGACGAGGACGGGG
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