mRNA_H-elongata_contig84124.16022.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig84124.16022.1
Unique NamemRNA_H-elongata_contig84124.16022.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig84124.16022.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig84124contigH-elongata_contig84124:302..1972 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size304
Cds size186
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig84124.16022.1prot_H-elongata_contig84124.16022.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig84124 382..1934 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931246.1699274-UTR-H-elongata_contig84124:301..3811622931246.1699274-UTR-H-elongata_contig84124:301..381Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig84124 302..381 -
1691679757.958717-UTR-H-elongata_contig84124:301..3811691679757.958717-UTR-H-elongata_contig84124:301..381Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig84124 302..381 -
1622931246.2269328-UTR-H-elongata_contig84124:1934..19721622931246.2269328-UTR-H-elongata_contig84124:1934..1972Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig84124 1935..1972 -
1691679758.0037098-UTR-H-elongata_contig84124:1934..19721691679758.0037098-UTR-H-elongata_contig84124:1934..1972Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig84124 1935..1972 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931246.1962547-CDS-H-elongata_contig84124:381..4781622931246.1962547-CDS-H-elongata_contig84124:381..478Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig84124 382..478 -
1691679757.9809196-CDS-H-elongata_contig84124:381..4781691679757.9809196-CDS-H-elongata_contig84124:381..478Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig84124 382..478 -
1622931246.213664-CDS-H-elongata_contig84124:1845..19341622931246.213664-CDS-H-elongata_contig84124:1845..1934Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig84124 1846..1934 -
1691679757.9933221-CDS-H-elongata_contig84124:1845..19341691679757.9933221-CDS-H-elongata_contig84124:1845..1934Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig84124 1846..1934 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig84124.16022.1

>prot_H-elongata_contig84124.16022.1 ID=prot_H-elongata_contig84124.16022.1|Name=mRNA_H-elongata_contig84124.16022.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=62bp
MRGSRQKVAVAVAEILSTRSLFLSYWLVRRRQAFNAARHSLLSYRRDCAP
LPGLWRVPARS*
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mRNA from alignment at H-elongata_contig84124:302..1972-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig84124.16022.1 ID=mRNA_H-elongata_contig84124.16022.1|Name=mRNA_H-elongata_contig84124.16022.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1671bp|location=Sequence derived from alignment at H-elongata_contig84124:302..1972- (Himanthalia elongata Himel1 dioecious)
CAAAGCTGTCCCATGAAAAGTTATTCCCAGGAGGTATAATGCGAGGCTCA
CGTCAGAAGGTGGCTGTTGCGGTAGCAGAAATATTATCTACGAGGTCCCT
TTTCTTAAGCTACTGGCTGGTGCGTAGGTGAGAAAGACTGCTCAAAGATA
GTAATGTACCTACTCACAGAGTAAGAGACATGAATATTCAAGACTGATGG
CTGTACAGGGATTTACGAGGTAGCGGTGGACTCATCCGTGGAAATCCTAG
CTTATTTGTTGCCCTCATCGCTTGATGCCGGAATCAGAGGAAGTTGCATT
GCCAACTTGTTATATTTTTCAGCGGCAAAGTCAGCATCACGCACCCAAAA
CCTCGAAGGAAGGACGACGAGCTAAAACCATGTTTTTATTAAAAAACATA
TTCCTCCCAAGAACGAGATTTCCCTTCGTCCCCAGTGTAAAAAAAACTGA
AGCTTGTTCACAGCAGGCCTTCAAATCCAGGGGAGTGAAAACAATTACAT
CCTCGCAGAGAAGATTGGTAGGGAGCTCGGTCGGTGTACAGCTCTGCACT
AGTCCGGCATTTCGACTTTATTGAAAAGAGCAGGTTGGAGAACTACTCTG
CGTGGGGGGGGTTACATTGGATGGGGAAACTGAATCAGCCCTGTCCCGAT
TGCGTAACGCAAATTCTTTAAAAACCTATGCTTTCTTTGTTCCAACATGT
TAGATGCTTTCCACTATACCCCACTGGTACAGCAGCTAACAGCTGTCGAA
TACGAGGGAAATATCCAAAAGACAGCAATACTACTGAAACACTTGATGCA
CTCGATCGTGAATACCTAGAGTTACTACATCAATTCTCAAGTGAAGTTGC
TCAGCTGGTGAAAACAAACGGCAATGAGCGTTAGTAGTGAAGGTCAGCAG
AGCGTTGTTCCCTCAGAGGATGAGAGCGATGTTGTCTCGAAGGACCCGGC
TGTAGATGACAGGCGAAAACTGGTGAGCCGGCTGTGCTCAAAGCGACCGA
ATGAGTAGAAATCTTCCTGGTGCAGGATCGTTATCGCCGCTTAGCCTGTG
CCGTAATCATCGATGTAGATGCGGTTTTTTCCTGCACCATATCGGTTTAG
CGATCAATTTTGAACCGGGATACGCGATTCTGTTGAAGTCAGCAAAAATC
TTCCTGAGTGGTGCACACCCTCGCTCACCATGCAGCGAGATTGCCTCTTT
TGAGATATTATTATCCAAAGAAATAGATAGATTGTACACGGGAGAAGACA
TATCTCTCTGGCCTCCCTAAACCCGGCTGATTTCTTTCTAAAATTGTGCT
TGATGTTGTAAAGGTTTTCGTTTTGTGGTGCACTTAAGACCACTCGGTTT
TTCCAGATTCCTTCCGGAATGCCGTGATGTGAACTGTGCGAGGCGGTGAA
AGCACGTATCGGTACCAGTCTCGTAAAGGCGCTAGATGTATGTATGCGAG
AGACGCATATTCTATAACTAATCCGCTTTCCTCTCCGACCCCAGACGGCA
GGCCTTCAATGCCGCACGGCATTCGTTGCTGAGCTACAGGAGAGATTGCG
CTCCGCTACCGGGGCTCTGGCGCGTACCCGCGCGGAGCTAGAAGCAGTCA
AACGGGAGTTAGAGACGACGCGTAAGGGAAAAGACGGAGCCGAGCGAGAG
GTGGTCACCCTACAGACTCAG
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Coding sequence (CDS) from alignment at H-elongata_contig84124:302..1972-

>mRNA_H-elongata_contig84124.16022.1 ID=mRNA_H-elongata_contig84124.16022.1|Name=mRNA_H-elongata_contig84124.16022.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=372bp|location=Sequence derived from alignment at H-elongata_contig84124:302..1972- (Himanthalia elongata Himel1 dioecious)
ATGCGAGGCTCACGTCAGAAGGTGGCTGTTGCGGTAGCAGAAATATTATC
TACGAGGTCCCTTTTCTTAAGCTACTGGCTGGTGCGTAGATGCGAGGCTC
ACGTCAGAAGGTGGCTGTTGCGGTAGCAGAAATATTATCTACGAGGTCCC
TTTTCTTAAGCTACTGGCTGGTGCGTAGACGGCAGGCCTTCAATGCCGCA
CGGCATTCGTTGCTGAGCTACAGGAGAGATTGCGCTCCGCTACCGGGGCT
CTGGCGCGTACCCGCGCGGAGCTAGACGGCAGGCCTTCAATGCCGCACGG
CATTCGTTGCTGAGCTACAGGAGAGATTGCGCTCCGCTACCGGGGCTCTG
GCGCGTACCCGCGCGGAGCTAG
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