mRNA_H-elongata_contig8410.16020.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig8410.16020.1
Unique NamemRNA_H-elongata_contig8410.16020.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig8410.16020.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig8410contigH-elongata_contig8410:3931..5530 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size1118
Cds size582
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig8410.16020.1prot_H-elongata_contig8410.16020.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig8410 3931..4512 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931245.8734577-CDS-H-elongata_contig8410:3930..45121622931245.8734577-CDS-H-elongata_contig8410:3930..4512Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig8410 3931..4512 -
1691679757.8277245-CDS-H-elongata_contig8410:3930..45121691679757.8277245-CDS-H-elongata_contig8410:3930..4512Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig8410 3931..4512 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931245.8909633-UTR-H-elongata_contig8410:4512..47491622931245.8909633-UTR-H-elongata_contig8410:4512..4749Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig8410 4513..4749 -
1691679757.8383353-UTR-H-elongata_contig8410:4512..47491691679757.8383353-UTR-H-elongata_contig8410:4512..4749Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig8410 4513..4749 -
1622931245.9067094-UTR-H-elongata_contig8410:5061..53131622931245.9067094-UTR-H-elongata_contig8410:5061..5313Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig8410 5062..5313 -
1691679757.8518858-UTR-H-elongata_contig8410:5061..53131691679757.8518858-UTR-H-elongata_contig8410:5061..5313Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig8410 5062..5313 -
1622931245.957276-UTR-H-elongata_contig8410:5485..55301622931245.957276-UTR-H-elongata_contig8410:5485..5530Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig8410 5486..5530 -
1691679757.866361-UTR-H-elongata_contig8410:5485..55301691679757.866361-UTR-H-elongata_contig8410:5485..5530Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig8410 5486..5530 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig8410.16020.1

>prot_H-elongata_contig8410.16020.1 ID=prot_H-elongata_contig8410.16020.1|Name=mRNA_H-elongata_contig8410.16020.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=194bp
MREEVSGKYSCEDRGRVKNMTEILLLDEIATLCPDKVWASTLGAYLASEA
LGLTTKVVIPLDHVTRSKWRGRRPQPRGDAFRRKCPPRLLGCRRWPPLGF
GSRWLPSSGHGSRRQPPSGLWSRRWRLLQEAATKIARVQDVAVARVREQV
AAAERWRLLAGSGRRDCSGAGGLGQTTLEAAEPVSRGQNIRRER
back to top

mRNA from alignment at H-elongata_contig8410:3931..5530-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig8410.16020.1 ID=mRNA_H-elongata_contig8410.16020.1|Name=mRNA_H-elongata_contig8410.16020.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1600bp|location=Sequence derived from alignment at H-elongata_contig8410:3931..5530- (Himanthalia elongata Himel1 dioecious)
AAGGGCGCTACCGGCAACCACAGTAAGAAGGACACCTCGCAGAAGGTAAA
GGGAGCTTTGACTTTGTATTCGTTACTTCATGTTACATTCGTTCGTGTTT
AGTCTTAGGCGTTGTCGTTTGACCTCTGCCGGTAGAGCTCTCCTGACGTA
CAGGCATGACAGTGCAGCTGTGGCCCTGTGCTTGTTGCCGTCCCTTCCGT
CGATATTCATTTCTCAGGCTGGTGTAAAGGCACGATTTATGACCGACAAA
CTCGTCGGTCAGCGACTTTCAGCGCTTTAAGGCATCCTGAAAACATGTCT
CACCCCTCGGCAAAGTCGTGGCGCTGTGGACTGCGAAGAGGCGCGGACGG
CCGCCTTCGTGAAGACCAAGTCTGCTCTCAAGTTCGCGAAGGAAGAATGC
TCTTTCAAGGCCGTCCTTGGATGCCAGCGTGGTGGACTGTTTCCCGGCGT
GCCGGAGGATGATGACGAGGTAGGGTACGCCCATTTACACATTATATACT
ACAGCTGCATGTGGAATTTATCTTCTACCTTAAGCAGCTGACGAAACTTT
CGCTAGTCAGTCACGGAGAACTCCACAGTTGACCCGACGCACTGAACCTG
GGAGGTAGCGGGGTATAGCGTCGTTCTTCTTTATTGATTGTTAATTTAGG
GACTGTTTACTTTTGCAGGCCTTGGGGCAATATTCTATCTCCGCCTCATC
TCATTGTGTTGTACAATGTAAAGCACCATACAATTGCTTACACTTCTGCT
CGGTCGCATTGCTCACCCGTGTTGTGTGCAGGGTCCGTCGACTCTGGACG
GCAAGGCAACAGAGGTGCTCCCGTTGTCTCTTCGGGGTCTCTGGGTGACG
TTGTTTGCAGAAGGTGACGGCAAATGATTTTGGTGATCAATGTCGAACGG
TATATGGTGAAAGCAGCTTTTTCACCGCCACCTGAAGTTGATTGTTCTGG
CCTACGCTGCGGCTACTTCGGACCAACTGATCGGCAAAGGTCGTTACCTC
CACGGCAGCAGCTTCTTAATGCGCGAAGAAGTGAGTGGTAAATACTCCTG
CGAAGATCGGGGACGCGTGAAGAACATGACGGAGATTTTGCTGTTGGACG
AGATCGCTACCCTTTGCCCGGACAAGGTGTGGGCCTCCACCCTTGGCGCG
TACCTAGCGTCTGAAGCCCTAGGCTTGACAACGAAGGTGGTAATCCCTTT
AGACCATGTGACGAGGAGCAAGTGGAGAGGCAGGAGACCACAGCCGAGAG
GTGACGCCTTTCGCAGGAAGTGTCCGCCAAGATTGCTCGGGTGCAGAAGG
TGGCCGCCACTAGGGTTCGGGAGCAGGTGGCTGCCGTCAAGCGGGCACGG
GAGCAGGAGGCAGCCACCGAGCGGACTCTGGAGCAGGAGGTGGCGCCTTT
TGCAGGAAGCGGCCACCAAGATTGCTCGGGTGCAGGACGTGGCCGTGGCG
AGAGTTCGGGAACAGGTGGCCGCAGCCGAGAGGTGGCGCCTTTTGGCAGG
AAGCGGCCGCCGAGATTGCTCGGGTGCAGGAGGCTTAGGGCAAACAACCC
TGGAGGCTGCTGAACCCGTCTCGCGAGGCCAAAATATCAGGCGCGAACGG
back to top

Coding sequence (CDS) from alignment at H-elongata_contig8410:3931..5530-

>mRNA_H-elongata_contig8410.16020.1 ID=mRNA_H-elongata_contig8410.16020.1|Name=mRNA_H-elongata_contig8410.16020.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1164bp|location=Sequence derived from alignment at H-elongata_contig8410:3931..5530- (Himanthalia elongata Himel1 dioecious)
ATGCGCGAAGAAGTGAGTGGTAAATACTCCTGCGAAGATCGGGGACGCGT
GAAGAACATGACGGAGATTTTGCTGTTGGACGAGATCGCTACCCTTTGCC
CGGACAAGGTGTGGGCCTCCACCCTTGGCGCGTACCTAGCGTCTGAAGCC
CTAGGCTTGACAACGAAGGTGGTAATCCCTTTAGACCATGTGACGAGGAG
CAAGTGGAGAGGCAGGAGACCACAGCCGAGAGGTGACGCCTTTCGCAGGA
AGTGTCCGCCAAGATTGCTCGGGTGCAGAAGGTGGCCGCCACTAGGGTTC
GGGAGCAGGTGGCTGCCGTCAAGCGGGCACGGGAGCAGGAGGCAGCCACC
GAGCGGACTCTGGAGCAGGAGGTGGCGCCTTTTGCAGGAAGCGGCCACCA
AGATTGCTCGGGTGCAGGACGTGGCCGTGGCGAGAGTTCGGGAACAGGTG
GCCGCAGCCGAGAGGTGGCGCCTTTTGGCAGGAAGCGGCCGCCGAGATTG
CTCGGGTGCAGGAGGCTTAGGGCAAACAACCCTGGAGGCTGCTGAACCCG
TCTCGCGAGGCCAAAATATCAGGCGCGAACGGATGCGCGAAGAAGTGAGT
GGTAAATACTCCTGCGAAGATCGGGGACGCGTGAAGAACATGACGGAGAT
TTTGCTGTTGGACGAGATCGCTACCCTTTGCCCGGACAAGGTGTGGGCCT
CCACCCTTGGCGCGTACCTAGCGTCTGAAGCCCTAGGCTTGACAACGAAG
GTGGTAATCCCTTTAGACCATGTGACGAGGAGCAAGTGGAGAGGCAGGAG
ACCACAGCCGAGAGGTGACGCCTTTCGCAGGAAGTGTCCGCCAAGATTGC
TCGGGTGCAGAAGGTGGCCGCCACTAGGGTTCGGGAGCAGGTGGCTGCCG
TCAAGCGGGCACGGGAGCAGGAGGCAGCCACCGAGCGGACTCTGGAGCAG
GAGGTGGCGCCTTTTGCAGGAAGCGGCCACCAAGATTGCTCGGGTGCAGG
ACGTGGCCGTGGCGAGAGTTCGGGAACAGGTGGCCGCAGCCGAGAGGTGG
CGCCTTTTGGCAGGAAGCGGCCGCCGAGATTGCTCGGGTGCAGGAGGCTT
AGGGCAAACAACCCTGGAGGCTGCTGAACCCGTCTCGCGAGGCCAAAATA
TCAGGCGCGAACGG
back to top