mRNA_H-elongata_contig84021.16012.1 (mRNA) Himanthalia elongata Himel1 dioecious
|
Overview
Homology
BLAST of mRNA_H-elongata_contig84021.16012.1 vs. uniprot
Match: A0A6H5JFC0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JFC0_9PHAE) HSP 1 Score: 98.6 bits (244), Expect = 4.440e-19 Identity = 58/140 (41.43%), Postives = 79/140 (56.43%), Query Frame = 1
Query: 1 ADPNLCLDAFIVALNTTCDGMEWWCASTLQLQLVSLQFCVACRSVRLLHLNVNRRTPRYMWAFDGPAMETR-----RAKKLRSTRVPILRAKTVRWELPASSLAHSNDALSNLEYMCFMCKTANDWKEVVWPSGLKKIIL 405
A P+ CLDAF VALN CDG W+ ST QLQL SL FCVACRSV +HL V+R TP +++ D A R +K++ + RVP LRA+ V W+L + + LS++E + E VW G++ + L
Sbjct: 25 AGPSRCLDAFKVALNQACDGGGWY-VSTEQLQLSSLPFCVACRSVPTMHLKVDRSTPARLFSGDDDAAAVRDKGHGSSKRVMAARVPALRARKVTWQLSGETPRCTGVGLSSVELFVLGDAVNDSMDEAVWSDGMRSLSL 163
BLAST of mRNA_H-elongata_contig84021.16012.1 vs. uniprot
Match: A0A6H5JRF9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRF9_9PHAE) HSP 1 Score: 94.7 bits (234), Expect = 3.810e-17 Identity = 56/135 (41.48%), Postives = 80/135 (59.26%), Query Frame = 1
Query: 10 NLCLDAFIVALNTTCDGMEWWCASTLQLQLVSLQFCVACRSVRLLHLNVNRRTPRYMWAF-DGPAMETRRAKKLRSTRVPILRAKTVRWELP-ASSLAHSNDALSNLEYMCFMCKTANDWKEVVWPSGLKKIILH 408
CL+A IVALN TCDG W+ ST +LQL SL FC+ACR+ + +HLNV+ + PR + A D P K+L TRVP LR++ V W +P A+ L A++++EY+ F + + V WP L+ + H
Sbjct: 49 KFCLEALIVALNETCDGKSWY-TSTKELQLASLDFCIACRNCQTVHLNVDEQIPRRLLASADAPPPHP---KRLCWTRVPRLRSRRVTWNMPTAAKLRTPIFAMTDMEYLEFGDAFGDSLEAVPWPEHLRTMEFH 179
BLAST of mRNA_H-elongata_contig84021.16012.1 vs. uniprot
Match: D7FXS2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FXS2_ECTSI) HSP 1 Score: 90.1 bits (222), Expect = 5.480e-17 Identity = 60/133 (45.11%), Postives = 74/133 (55.64%), Query Frame = 1
Query: 7 PNLCLDAFIVALNTTCDGMEWWCASTLQLQLVSLQFCVACRSVRLLHLNVNR-RTPRYMWAFDGPAMETRR-AKKLRSTRVPILRAKTVRWELPASSLAHSNDALSNLEYMCFMCKTANDWKEVVWPSGLKKI 399
P CL+AF VALNT+CDG W+ ST +LQL SLQFCV CR V LHL VN P +W D A E R AK+ +T VP+ R + V W PA L+ + +E T D +VVWP LKK+
Sbjct: 4 PGRCLEAFAVALNTSCDGNVWY-TSTKELQLASLQFCVKCRKVPSLHLAVNNAHVPARLWN-DHAATEARTGAKRPSTTPVPVFRPREVTWGRPAWLLSDICLVFAKVERFLVRQDTVVD--DVVWPCRLKKL 132
BLAST of mRNA_H-elongata_contig84021.16012.1 vs. uniprot
Match: D7G241_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G241_ECTSI) HSP 1 Score: 89.4 bits (220), Expect = 2.070e-16 Identity = 61/149 (40.94%), Postives = 83/149 (55.70%), Query Frame = 1
Query: 16 CLDAFIVALNTTCDGMEWWCASTLQLQLVSLQFCVACRSVRLLHLNVNRRTPRYMWA--FDGPAMETRRAKKLRS----TRVPILRAKTVRWELPASSLAHSNDAL-SNLEYMCFMCKTANDW--KEVVWPSGLKKIILHWKGSRVDDV 435
CL+AF+VAL+ TCDG +W+ AST QLQL SL C ACR V L L+V R TP Y+WA GP KK + TRVP + V W+L A L + L +N++ + F NDW WP+GLK++ L ++ ++ V
Sbjct: 12 CLEAFVVALDLTCDGEKWY-ASTQQLQLASLDLCKACRGVPTLALSVERSTPEYLWAEAARGPRGRLTGEKKPPAARTRTRVPPFGPRRVMWKLRARELGLARKELWANVQCLLFT-GYHNDWVCDGFSWPTGLKRLDLGYRLFSIEQV 158
BLAST of mRNA_H-elongata_contig84021.16012.1 vs. uniprot
Match: A0A6H5JZZ4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZZ4_9PHAE) HSP 1 Score: 89.7 bits (221), Expect = 4.020e-15 Identity = 57/135 (42.22%), Postives = 76/135 (56.30%), Query Frame = 1
Query: 10 NLCLDAFIVALNTTCDGMEWWCASTLQLQLVSLQFCVACRSVRLLHLNVNRRTPRYMWAF-DGPAMETRRAKKLRSTRVPILRAKTVRWELP-ASSLAHSNDALSNLEYMCFMCKTANDWKEVVWPSGLKKIILH 408
N CL+A VAL T DG W+ ST +LQL SL+FC+ACR+ + LHL V+ R PR + A DGP K+L RVP LRA+ V W +P A+ L AL +L+++ F + V WP L+ I H
Sbjct: 34 NTCLNAIYVALGETRDGKSWY-TSTKELQLASLEFCMACRAYQTLHLIVDVRIPRMLLAAADGPPQHP---KRLSRRRVPRLRARHVTWNMPTAAELRSPIFALMDLDHLDFGSAFEGSLEAVTWPRRLESIAFH 164
BLAST of mRNA_H-elongata_contig84021.16012.1 vs. uniprot
Match: D7G0Z9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0Z9_ECTSI) HSP 1 Score: 82.0 bits (201), Expect = 4.920e-15 Identity = 40/58 (68.97%), Postives = 47/58 (81.03%), Query Frame = 1
Query: 16 CLDAFIVALNTTCDGMEW-WCASTLQLQLVSLQFCVACRSVRLLHLNVNRRTPRYMWA 186
CLDAF+VALN TCDG E W ASTL+LQLVSL+FC ACR V LH+ V+RRTPR +W+
Sbjct: 41 CLDAFVVALNQTCDGQEKRWYASTLELQLVSLEFCGACRHVPTLHVRVDRRTPRSLWS 98
BLAST of mRNA_H-elongata_contig84021.16012.1 vs. uniprot
Match: A0A6H5JG83_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JG83_9PHAE) HSP 1 Score: 87.0 bits (214), Expect = 1.680e-14 Identity = 61/148 (41.22%), Postives = 78/148 (52.70%), Query Frame = 1
Query: 31 IVALNTTCDGMEWWCASTLQLQLVSLQFCVACRSVRLLHLNVNRRTPRYMWA------FDGPAMETRRAKKLRST--RVPILRAKTVRWELPASSLAH-SNDALSNLEYMCF---MCKTANDWKEVVWPSGLKKIIL-HWKGSRVDDV 435
+VALN T G +W+ ST+QLQL S++FCVACRSV LHL V TPR++WA D RS RVP R + V W LP S L+ S DA NLE M F + ++ + + V P GLK ++ W VD V
Sbjct: 1 MVALNETYGGKQWY-ISTVQLQLASVEFCVACRSVSTLHLTVEEGTPRHLWADTWSDQSDXXXXXXXXXXXGRSVLVRVPPFRPREVTWNLPPSMLSEASKDAFKNLECMSFSDAVERSGDSFDGVALPRGLKSVVFGRWCYQHVDKV 147
BLAST of mRNA_H-elongata_contig84021.16012.1 vs. uniprot
Match: A0A6H5KPY7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KPY7_9PHAE) HSP 1 Score: 87.0 bits (214), Expect = 2.400e-14 Identity = 55/130 (42.31%), Postives = 72/130 (55.38%), Query Frame = 1
Query: 16 CLDAFIVALNTTCDGMEWWCASTLQLQLVSLQFCVACRSVRLLHLNVNRRTPRYMWAF-DGPAMETRRAKKLRSTRVPILRAKTVRWELP-ASSLAHSNDALSNLEYMCFMCKTANDWKEVVWPSGLKKI 399
CL VALN TCDG W+ ST +LQL SL+ C+ACR + LHL V+ TPR + A D P+ K+L TRVP LRA+ W +P AS + S A +++Y+ F +VWP LK I
Sbjct: 136 CLKTLTVALNETCDGKSWY-TSTKELQLASLELCMACRHYQTLHLTVDAHTPRRLLAAADAPSPHP---KRLCGTRVPRLRARRATWNVPTASGMRTSIFATMDVDYLEFGQAFHGSLDAIVWPRRLKTI 261
BLAST of mRNA_H-elongata_contig84021.16012.1 vs. uniprot
Match: A0A6H5JRK5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRK5_9PHAE) HSP 1 Score: 85.1 bits (209), Expect = 8.640e-14 Identity = 54/126 (42.86%), Postives = 75/126 (59.52%), Query Frame = 1
Query: 31 IVALNTTCDGMEWWCASTLQLQLVSLQFCVACRSVRLLHLNVNRRTPRYMWA-FDGPAMETRRAKKLRSTRVPILRAKTVRWELP-ASSLAHSNDALSNLEYMCFMCKTANDWKEVVWPSGLKKII 402
I+ALN CDG W+ ST +LQL SL+FC+ACR ++L L V+ +TPR + A D P T+R + TRVP LRA+ V+W +P A+ L AL ++ + F + VVWP LK+II
Sbjct: 22 ILALNEMCDGKRWY-TSTKELQLASLEFCLACRKYQILELKVDAQTPRNLLAAVDAPPPHTKRPCR---TRVPRLRARRVKWNMPTATELRTLMFALKDVNCLRFGGVFNGSLEAVVWPPPLKQII 143
BLAST of mRNA_H-elongata_contig84021.16012.1 vs. uniprot
Match: A0A6H5KNI6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KNI6_9PHAE) HSP 1 Score: 85.5 bits (210), Expect = 9.330e-14 Identity = 53/135 (39.26%), Postives = 72/135 (53.33%), Query Frame = 1
Query: 16 CLDAFIVALNTTCDGMEW-WCASTLQLQLVSLQFCVACRSVRLLHLNVNRRTPRYMW--AFDGPAMETRRAKKLRSTRVPILRAKTVRWELPASSLAHSNDALSNLEYMCFMCKT---ANDWKEVVWPSGLKKII 402
CLDAF+VALN CDG E W STL+LQLVSL+ C ACR V+ LH+ V +TP +W + + R K S+RVP+++A + W LP L + C T A + VWP LK+++
Sbjct: 9 CLDAFVVALNQACDGQEKRWYVSTLELQLVSLEVCGACRRVQTLHVRVKPQTPPSLWFPSQNHTTTNNRSPKVCISSRVPVVQAFGLTWALPMGVLQQRSATEVRSGSGCRRANTHSSAASLESAVWPQRLKRMV 143 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig84021.16012.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 20
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig84021.16012.1 >prot_H-elongata_contig84021.16012.1 ID=prot_H-elongata_contig84021.16012.1|Name=mRNA_H-elongata_contig84021.16012.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=324bp MEWWCASTLQLQLVSLQFCVACRSVRLLHLNVNRRTPRYMWAFDGPAMETback to top mRNA from alignment at H-elongata_contig84021:556..2222+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig84021.16012.1 ID=mRNA_H-elongata_contig84021.16012.1|Name=mRNA_H-elongata_contig84021.16012.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1667bp|location=Sequence derived from alignment at H-elongata_contig84021:556..2222+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig84021:556..2222+ >mRNA_H-elongata_contig84021.16012.1 ID=mRNA_H-elongata_contig84021.16012.1|Name=mRNA_H-elongata_contig84021.16012.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1944bp|location=Sequence derived from alignment at H-elongata_contig84021:556..2222+ (Himanthalia elongata Himel1 dioecious)back to top |