mRNA_H-elongata_contig8396.16008.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig8396.16008.1
Unique NamemRNA_H-elongata_contig8396.16008.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig8396.16008.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig8396contigH-elongata_contig8396:4430..9236 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons7
Model size597
Cds size555
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931244.4184282-UTR-H-elongata_contig8396:4429..44301622931244.4184282-UTR-H-elongata_contig8396:4429..4430Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig8396 4430..4430 -
1691679757.2048373-UTR-H-elongata_contig8396:4429..44301691679757.2048373-UTR-H-elongata_contig8396:4429..4430Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig8396 4430..4430 -
1622931244.5698655-UTR-H-elongata_contig8396:9195..92361622931244.5698655-UTR-H-elongata_contig8396:9195..9236Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig8396 9196..9236 -
1691679757.2963371-UTR-H-elongata_contig8396:9195..92361691679757.2963371-UTR-H-elongata_contig8396:9195..9236Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig8396 9196..9236 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931244.4363167-CDS-H-elongata_contig8396:4430..44861622931244.4363167-CDS-H-elongata_contig8396:4430..4486Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig8396 4431..4486 -
1691679757.2192929-CDS-H-elongata_contig8396:4430..44861691679757.2192929-CDS-H-elongata_contig8396:4430..4486Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig8396 4431..4486 -
1622931244.4621177-CDS-H-elongata_contig8396:4517..46671622931244.4621177-CDS-H-elongata_contig8396:4517..4667Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig8396 4518..4667 -
1691679757.2289402-CDS-H-elongata_contig8396:4517..46671691679757.2289402-CDS-H-elongata_contig8396:4517..4667Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig8396 4518..4667 -
1622931244.4787884-CDS-H-elongata_contig8396:6516..66061622931244.4787884-CDS-H-elongata_contig8396:6516..6606Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig8396 6517..6606 -
1691679757.2374928-CDS-H-elongata_contig8396:6516..66061691679757.2374928-CDS-H-elongata_contig8396:6516..6606Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig8396 6517..6606 -
1622931244.5000036-CDS-H-elongata_contig8396:7404..74851622931244.5000036-CDS-H-elongata_contig8396:7404..7485Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig8396 7405..7485 -
1691679757.246269-CDS-H-elongata_contig8396:7404..74851691679757.246269-CDS-H-elongata_contig8396:7404..7485Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig8396 7405..7485 -
1622931244.522201-CDS-H-elongata_contig8396:7753..78251622931244.522201-CDS-H-elongata_contig8396:7753..7825Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig8396 7754..7825 -
1691679757.262108-CDS-H-elongata_contig8396:7753..78251691679757.262108-CDS-H-elongata_contig8396:7753..7825Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig8396 7754..7825 -
1622931244.5416594-CDS-H-elongata_contig8396:8575..86471622931244.5416594-CDS-H-elongata_contig8396:8575..8647Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig8396 8576..8647 -
1691679757.277667-CDS-H-elongata_contig8396:8575..86471691679757.277667-CDS-H-elongata_contig8396:8575..8647Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig8396 8576..8647 -
1622931244.5577414-CDS-H-elongata_contig8396:9161..91951622931244.5577414-CDS-H-elongata_contig8396:9161..9195Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig8396 9162..9195 -
1691679757.2874112-CDS-H-elongata_contig8396:9161..91951691679757.2874112-CDS-H-elongata_contig8396:9161..9195Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig8396 9162..9195 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig8396.16008.1prot_H-elongata_contig8396.16008.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig8396 4431..9195 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig8396.16008.1

>prot_H-elongata_contig8396.16008.1 ID=prot_H-elongata_contig8396.16008.1|Name=mRNA_H-elongata_contig8396.16008.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=185bp
MILKLEDNGLEGIVPEDVWGLTSLEQLNLGSNTLAGNISSTIGLMEVLYM
LDLRENSFSGEIPTELGDLADKGGLDYVDLSDNYLIGSVPPGLNRSNVEM
LDLESNNLDDWGNQREVSASGAPYSTPLPVDPSPTTSPISPTPPPKFTTP
SPTSPTSSLTSLAPSMTVTTCSQSPWSSRQWLLC*
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mRNA from alignment at H-elongata_contig8396:4430..9236-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig8396.16008.1 ID=mRNA_H-elongata_contig8396.16008.1|Name=mRNA_H-elongata_contig8396.16008.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=4807bp|location=Sequence derived from alignment at H-elongata_contig8396:4430..9236- (Himanthalia elongata Himel1 dioecious)
CAGGCTCGATTCCCTCGGAGTTGGGCAACCTTAACAGTCTCATGATACTC
AAACTTGAAGACAACGGCTTGGAGGGTAAGCCCGACCGGGTCGTTGGTTT
CCTTTAGGATGAAACCGTCGCAGTAAATATATAACCGACGCGTTTCCCCC
GACGCGGTATGATTTCTTTTGCTGCACAACCGATAGCAAAACTGCTGGGT
ATAGGTCAGGCCTCGATCATGGGAGGGTCTGATAAGGGGGGGGGGTTACC
TCAGCTTTGCGTGTGTTGGCTATGAGACCATTGACCACGCGTCCTTGAAA
GGACGGAGCATTGGGGAGGGAGATGTCGGTTATTCTGCCGTTGATATTTT
GTTTTGCACCCCTAAACCTAGTAATAGCCCTAGCCTAATTTTTCGTGCCT
CCCGTTGCGCAAGTGCAGAGGAGTGATTGTTCCGCGTTACTCATGCCTAC
ATTCGTAGGCTCTTGAACTACCACACATGTCTTGCGGAAGCTATTCGTAA
ACGGCTCGTGAATCTCCTCTAAAAGATTAAAACGTATTTGAAGATAATAT
TGTACTGACGTGGTCGGTGCGTGCCTGCTGACGGGCCAGGTATAGTTCCG
GAGGACGTGTGGGGGCTTACTAGCTTGGAGCAGCTTAACCTCGGAAGTAA
CACACTAGCAGGTTTGAAGCACGACGCATTATCGAACCGGCATGTCCTTC
GATAATATATATAGTCTATTGCCCTTATACGCAGGACACATACTTTAAAT
TAGATACGCCATGGGCCGTGCGGGGTCGTGGCAGGGGCTTATGTGTGCAA
ACACGACAGAATTTGAGCTCGGGCGTTTTGGTTCGGAGTCGCAACTCAAC
GCCACTTATGGTTTACTACATTACAGCTTAGGAGAGTTGGTGTATCTTAG
GCTGTGACGATGAGGCAGATGCTTTCTGTATGCTTTTTACTGTAGTAGAG
AAGAAGTGGTTTTTGTACTCCGATGGAACACCTGTTTGGAATTTCGATGA
GAAATTTCTTTAGCGGAAGGGTGCTGAGCTGACATCGCCATAGAGGAGCG
ATCGCTTGACTCAGGAATAGGTGGGTCTCCCTTCCTCGCCAGGTATATGA
TGGCCATATATGAAACCCGTCCCCCCTTTCCAACGTATATATCGGGGGGA
GGGGGGGAGGGTTTGTAATGTTATCGCGTTGATATATTCTTTAACGACCA
GTCACAGGTTATGGTGGCATGGGCAACGTTTCACGTGATGAGACTGGCAA
GCCTAACCGTAATCTTAACCCGAAGTCTGAGTCTACCCCTAGCACGTTGA
ATAGCCCCATTGGTAAAAGGGGATATTAAAAAATAACGAAATAGAAGCAT
TCAGCCTGGCTAAATCCGCCGCCTTCCCCTCGTCTGGCTGTTCTTGCGCA
CGGCTGGCAAGGCAACATCTCCTCGACGATCGGACTGATGGAAGTTCTTT
ACATGTTGGATCTCCGCGAAAACAGCTTCAGCGGTAAGTTCGAGTGCTGA
TCGTCCGACGGTTATCGACAGTATATTACTGTGCGCTTATTTCATCTGAT
CGATATGCGATGCTCGCAAGCTCAAGCGTCAATCGACCGACAGAGAGGAG
TGTAACCAGTTGGGAAAATCGACGCGTGACGCCACCCACCGCAATGAATA
CGATTTCTGGAGTCGTGTTCTGTTTAGTATCGAAAGGCATTGATTTCACC
ACTTGGCAATCTTGCCGCTAACGACATATTATATCGACCGTCGTCTTCCA
GGCGAGATACCAACGGAGCTGGGGGATCTTGCCGACAAGGGGGGTTTAGA
TTACGTTGATCTCAGCGACAACTACCTTATAGGTACGATGGAAGCGGGGG
TTTTCCCAAGTGACCTATTCAATCTAGGCGCAATTCACAACTGTGCGTAG
ACCCCTAAATGAACCCCCCCCTAGCACGAAAGTGTGAAAATGAATCATAC
TTAACCCTTTTGGAACTGAATTTTAAGTTTATTTTGAATTTAGTATAGAA
AAACAGATCGAGTTCCGAAGGGGTTAAGGAAGCTGGCTTGCTACGGCATA
GTATTAATAGTATACTATAGGATTCGAATTAGAGCTGCACGGTAACTCAG
TTACAAATATGTCTGACTTAGTTTACTTCAGCAATAAAAGCTTGTCCACA
GCGCAGGCTGCTCAAACGCCCTGAGCAAAGCGACATGATTGAAAATAAAA
GTAAACAGATTTCGAAGACATTTATTTGTTTTTTAATATTTGGCACAAAC
GTGCGATCTATCTCACCGATTCCAATTTCGCCGAAGCCCGTTCGAAGAAG
GAGTTAAGTTTCAAAAAGAAAAAGGCGTGGCTAGGAAGAGATGGTGAGGG
GGCATCATTCCGGGGTGTCTGATTGCGCCGTCGAGCGGTGCCCTCAAGCT
ATGACTAGCATGGATTGGAGCCGCGTTTGTGGGTTAGGAATACATAGAGG
GCAGGAGAAGGGCCTTGAGGCCTTGAGGCTGTCGACACCGAGTAAGTCGC
CAAGCTTCACCGTGGCATCCGCCTAACAAATATTTACCCCTTCTCTCGCC
GTGGCGATCGTGATACGGCACGCGATGCCCCCTTCTCATCTATCCCGCGG
ATTCTCGGTAAACGACCACGAACAATACAGGGTCAGTGCCGCCAGGGCTC
AACAGGTCCAACGTGGAGATGCTCGATCTTGAGAGTAACAACCTCGACGA
CTGGGGAAATCAGAGGGAAGGTGAGCTCCAAAAATGTGAGAGCCATGGGC
GCCAGGGTGTCCTGCGTTATTCGAGTGTCTAGGTTGGGTACACCTATGGC
TAGGGTTAGGGTTAGAGTTAGGGTTAGTCACATACGTTCCCACCCTAACC
CTCGCACCCCTTCTCTGAAAACGCATTAGCAACAGCTCCAGCAGCAGCAA
TAATAACGTAAAACGATCAGTATGTAATATCATTATTGTAGCCCGGCTGC
AGCTCAACCAACCGAGGGTATCCTCTTGACGGCCCTCTAGGGTGCTGAAG
GTGCTGGGGTACCATTATGGGACCAGTTTTGTATTGTGTACCGAAAGGGA
ACTAGCGTCAGGACAAAGCACCCTGCAGGCATATCTATTCACCCTCGGAG
GTATGATATCGTTGCGCATGGCTGTAATTCTGGCTGATGGATTTAACCCG
TCCGTAGGGGGCGAACCAAAGCTAGCTACTGCTGTATGAGATACGATCGA
GGAATGAGAAAGGACAAAACAAAAACAAAAAACACAAACGTTGTCGCCGA
AAACTGCAAAATTAGACCCCAAATGGATATTTTTCGACACCATTGTTCTA
TTGGCGGGGAAGAATAAGAACAACAAACGCGGTCAGTTAGAGCGGGTATT
AACGGGGTTACAAAACTATTTTTTCCAGTCGATTTAAATTTAAATCGAGC
TCTGATTGGATAAAAAAATAAATAACGCCTAGCCTTCGTCCAATCAGCGC
ACGATTTAAATTTAAATCGGCTGGAATTGAATTTTTGCAACCCCGTTAAT
ACGCGCCCTTAGGCCCGTTGTTTTGGCGATGATAATGCTAAATCACTTTA
TGGATTATGATTTCGATTTCCTCTCCCCGCGGTCGGCAACGTCAATCATT
TGGAAAATCCGAAATGCTTTCCTGGGTGCATACTTTCTCAGAAGACCTGG
TCCGACGTTGGTGAAATGTTATATATAACCACAATTAATTATGGAATGTA
AAGAGCTCCGGTAGAATATCTTTAGTAAACTCAACTCGGGCATTAAACCG
TTGAAAAAAAAGTGGACGGGAAGATTAAGAAATATAAGGCCTCATTCTTT
CTAGGCCCCATTTAAAATGGGAAATCGAGTAGTGTAAAATAGGGTACCCC
GTAGATGTTTATTTTTATTTCAGCTTGCAAACGCTCTTCCACCAGCCGAC
CAGGAGGGTAGGGGACAAGGCGAAACGGTCCACTGTATCAGAACTAATCT
ACAGCGGCCCCTCTTTTTGGTTCTTACTCGTACTGCAGTTGTTTAACACT
TGGAAGCACTTGCCCGAATAATTGGAGGACGTATTGGCGGAAGTATTGCC
AATATTACACACCTAGGATCCTCCGAAAAATATCTAGGCCTCGAGAACGC
CTTGTTGGTTGAGGGGGTATCGCTGTTGCTACCCCCCCCCCCATACAAAT
TTTATTTTTGAGCCAAGAAAATTACAGATATATTATTGATTTCATACTCT
CCGGTGGGAGCCGGAAGTTCCTACGTCTTAATATGTTTCCGTTTTATCGA
TCTGCATTATACCGCGCAAACCGAAATGACATGTAAGGGGGCGCCGCACC
GGTTTACCAAGCGTGTGACCTAGACAGTTGTTGATCAAGTACATCACTTC
TCCTTGGTGAAATAATTTTATTGCTGTTTCAAGACCTCGCCGCTGTGTCA
GTGGACTACGGCCCGGAGAACCAGATCACGGAAAGGAACGTGATTAATGC
TCGTTCCAGACGGGGTGAAGCAGCGCACGGGGCATATCTGACAGCATCCC
CTCGTTCGTGTGCTTGTGACGCCTCTCTCGCCCCTGGGGATTCCCTATGG
CCTTAAACTCCCCCTGCAGTTTCGGCTTCGGGTGCGCCATATTCAACTCC
CTTACCCGTCGATCCATCTCCGACGACTTCTCCAATATCTCCGACCCCTC
CTCCAAAATTCACGACGCCTTCTCCGACATCTCCGACATCATCTCTGACA
TCTCTGGCGCCTTCTATGATCGGTTCGACCGCGTACTCGAAGGAAGAGTC
CGGTGACGACTTGCTCGCAATCGCCGTGGTCATCCCGACAGTGGCTTTTG
TGTTGAG
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Coding sequence (CDS) from alignment at H-elongata_contig8396:4430..9236-

>mRNA_H-elongata_contig8396.16008.1 ID=mRNA_H-elongata_contig8396.16008.1|Name=mRNA_H-elongata_contig8396.16008.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1110bp|location=Sequence derived from alignment at H-elongata_contig8396:4430..9236- (Himanthalia elongata Himel1 dioecious)
ATGATACTCAAACTTGAAGACAACGGCTTGGAGGATGATACTCAAACTTG
AAGACAACGGCTTGGAGGGTATAGTTCCGGAGGACGTGTGGGGGCTTACT
AGCTTGGAGCAGCTTAACCTCGGAAGTAACACACTAGCAGGTATAGTTCC
GGAGGACGTGTGGGGGCTTACTAGCTTGGAGCAGCTTAACCTCGGAAGTA
ACACACTAGCAGGCAACATCTCCTCGACGATCGGACTGATGGAAGTTCTT
TACATGTTGGATCTCCGCGAAAACAGCTTCAGCGGCAACATCTCCTCGAC
GATCGGACTGATGGAAGTTCTTTACATGTTGGATCTCCGCGAAAACAGCT
TCAGCGGCGAGATACCAACGGAGCTGGGGGATCTTGCCGACAAGGGGGGT
TTAGATTACGTTGATCTCAGCGACAACTACCTTATAGGCGAGATACCAAC
GGAGCTGGGGGATCTTGCCGACAAGGGGGGTTTAGATTACGTTGATCTCA
GCGACAACTACCTTATAGGGTCAGTGCCGCCAGGGCTCAACAGGTCCAAC
GTGGAGATGCTCGATCTTGAGAGTAACAACCTCGACGACTGGGGAAATCA
GAGGGAAGGGTCAGTGCCGCCAGGGCTCAACAGGTCCAACGTGGAGATGC
TCGATCTTGAGAGTAACAACCTCGACGACTGGGGAAATCAGAGGGAAGTT
TCGGCTTCGGGTGCGCCATATTCAACTCCCTTACCCGTCGATCCATCTCC
GACGACTTCTCCAATATCTCCGACCCCTCCTCCAAAATTCACGACGCCTT
CTCCGACATCTCCGACATCATCTCTGACATCTCTGGCGCCTTCTATGATT
TCGGCTTCGGGTGCGCCATATTCAACTCCCTTACCCGTCGATCCATCTCC
GACGACTTCTCCAATATCTCCGACCCCTCCTCCAAAATTCACGACGCCTT
CTCCGACATCTCCGACATCATCTCTGACATCTCTGGCGCCTTCTATGACG
GTGACGACTTGCTCGCAATCGCCGTGGTCATCCCGACAGTGGCTTTTGTG
TTGACGGTGACGACTTGCTCGCAATCGCCGTGGTCATCCCGACAGTGGCT
TTTGTGTTGA
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