mRNA_H-elongata_contig83929.16005.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig83929.16005.1
Unique NamemRNA_H-elongata_contig83929.16005.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig83929.16005.1 vs. uniprot
Match: D7FPJ3_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FPJ3_ECTSI)

HSP 1 Score: 315 bits (807), Expect = 4.510e-99
Identity = 157/188 (83.51%), Postives = 169/188 (89.89%), Query Frame = 1 
Query:    1 VAPSEYMVRPPQPPVYMFVIDVSAPAVVSGMVHVAAETIKTCLDLLPGGERTMVGFCTFDSNVHYYNLKAGLSQPQMLVVPDHADPLVPVPDDLVVNLSESRAVVDALLENLHQASRMHSGNRDAECCLGPALTAAGKVMGHLGGKMVVLCASLPSTGEARLRHRENPRALGTDREHLLLKAENPWYQ 564
            VAPSEYMVRPPQPPVYMFVIDVS PAV SGMVHVAAETIK CLD LPG ERTMVGFCTFDS+VH+YNLK+ LSQPQMLVVPD  +P +PVPDDL+VNLSESR+VVD LL+NL Q   MHS  RD +CCLGPALTAAGKVMGH+GGKM V+CASLPSTGEA L+HRENPRALGTDREHLLLKAENPWYQ
Sbjct:  296 VAPSEYMVRPPQPPVYMFVIDVSQPAVASGMVHVAAETIKACLDNLPGEERTMVGFCTFDSSVHFYNLKSNLSQPQMLVVPDLDEPFLPVPDDLLVNLSESRSVVDTLLDNLAQ---MHSQTRDVQCCLGPALTAAGKVMGHVGGKMAVMCASLPSTGEAALKHRENPRALGTDREHLLLKAENPWYQ 480
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BLAST of mRNA_H-elongata_contig83929.16005.1 vs. uniprot
Match: A0A836CAX8_9STRA (Sec23/Sec24 trunk domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CAX8_9STRA)

HSP 1 Score: 242 bits (617), Expect = 9.000e-72
Identity = 124/187 (66.31%), Postives = 144/187 (77.01%), Query Frame = 1 
Query:    4 APSEYMVRPPQPPVYMFVIDVSAPAVVSGMVHVAAETIKTCLDLLPGGERTMVGFCTFDSNVHYYNLKAGLSQPQMLVVPDHADPLVPVPDDLVVNLSESRAVVDALLENLHQASRMHSGNRDAECCLGPALTAAGKVMGHLGGKMVVLCASLPSTGEARLRHRENPRALGTDREHLLLKAENPWYQ 564
            AP+EYMVRPP  PVY FVIDVSA AV +GMV  A   IK CLD +PG ER+  G  TFD ++H+YNLK+ LSQPQMLVV D +D  +P PDDL+VNL+ESRAVVDALL+ L Q   MH   R  +  LGPAL AAGKVM HLGGKMVV CA+LPS GEA+L+HRENPR LGTD+EHL+LK + PWYQ
Sbjct:  257 APAEYMVRPPVAPVYFFVIDVSANAVNTGMVAAAVAAIKACLDRVPGDERSQFGLITFDGSIHFYNLKSTLSQPQMLVVSDISDLFLPCPDDLLVNLAESRAVVDALLDALPQ---MHRAARSVDSALGPALNAAGKVMAHLGGKMVVFCANLPSLGEAKLKHRENPRMLGTDKEHLMLKPDEPWYQ 440
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BLAST of mRNA_H-elongata_contig83929.16005.1 vs. uniprot
Match: A0A7S4D505_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4D505_HETAK)

HSP 1 Score: 234 bits (598), Expect = 4.040e-70
Identity = 122/188 (64.89%), Postives = 141/188 (75.00%), Query Frame = 1 
Query:    1 VAPSEYMVRPPQPPVYMFVIDVSAPAVVSGMVHVAAETIKTCLDLLPGGERTMVGFCTFDSNVHYYNLKAGLSQPQMLVVPDHADPLVPVPDDLVVNLSESRAVVDALLENLHQASRMHSGNRDAECCLGPALTAAGKVMGHLGGKMVVLCASLPSTGEARLRHRENPRALGTDREHLLLKAENPWYQ 564
            VAP EYMVRPPQPPVY FVIDVSA A  +G V  A  TI+ CL  LPG  RT VGF T+DS VH+YNLKA LSQPQ  VV D AD  +P P+DL+VNL ESRAVV+ALLE+L     M++ N  AE CLGPAL  A + MGH+GGK+V+LC+SLPS GE RL+HRENPR LGTD+EH LL AE  WY+
Sbjct:  105 VAPGEYMVRPPQPPVYFFVIDVSAQAAQNGSVAAACATIRRCLSDLPGSPRTQVGFVTYDSTVHFYNLKASLSQPQCYVVSDLADVFLPCPEDLLVNLQESRAVVEALLESL---PTMYAQNPAAESCLGPALMGAYRAMGHVGGKLVLLCSSLPSAGEGRLKHRENPRLLGTDQEHRLLNAEEGWYK 289
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BLAST of mRNA_H-elongata_contig83929.16005.1 vs. uniprot
Match: A0A7S2W394_9STRA (Hypothetical protein (Fragment) n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2W394_9STRA)

HSP 1 Score: 223 bits (569), Expect = 4.180e-68
Identity = 114/187 (60.96%), Postives = 141/187 (75.40%), Query Frame = 1 
Query:    4 APSEYMVRPPQPPVYMFVIDVSAPAVVSGMVHVAAETIKTCLDLLPGGERTMVGFCTFDSNVHYYNLKAGLSQPQMLVVPDHADPLVPVPDDLVVNLSESRAVVDALLENLHQASRMHSGNRDAECCLGPALTAAGKVMGHLGGKMVVLCASLPSTGEARLRHRENPRALGTDREHLLLKAENPWYQ 564
            AP+EYM+RPPQ PVY+FV+DVSA AV SG++  AA TIK CLD LPG  RT VGF  FDS+VH++NLKA LSQPQML VPD A+  +P+PDDL+VNL ESRAVVDALL+ L     M +G +  +   GPAL AA ++M H+GGKM V  +SLPS GEARL+HRENP+ LG+ +EH    AE+ WY+
Sbjct:  248 APAEYMLRPPQAPVYVFVLDVSAGAVASGVLQTAAATIKACLDKLPGAPRTQVGFIAFDSSVHFFNLKATLSQPQMLTVPDLAELFLPLPDDLLVNLHESRAVVDALLDAL---PGMFAGTKRMDVAFGPALVAAYRIMSHIGGKMTVFLSSLPSAGEARLKHRENPQLLGSPKEHFHFSAEDQWYK 431
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BLAST of mRNA_H-elongata_contig83929.16005.1 vs. uniprot
Match: A0A7S1CB04_9STRA (Hypothetical protein n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1CB04_9STRA)

HSP 1 Score: 224 bits (572), Expect = 4.120e-65
Identity = 119/188 (63.30%), Postives = 140/188 (74.47%), Query Frame = 1 
Query:    1 VAPSEYMVRPPQPPVYMFVIDVSAPAVVSGMVHVAAETIKTCLDLLPGGERTMVGFCTFDSNVHYYNLKAGLSQPQMLVVPDHADPLVPVPDDLVVNLSESRAVVDALLENLHQASRMHSGNRDAECCLGPALTAAGKVMGHLGGKMVVLCASLPSTGEARLRHRENPRALGTDREHLLLKAENPWYQ 564
            VAPSEYMVRPPQ PVYMFVIDVS  AV SG V    E IK  LD LPG  RT VGF T+DS +H+YNLK+ LS PQMLVV D A+P +PVPDDL+VNLS+SR VVDALL++L     M +G    E C+GPAL +A  VM H+GGKM+VL ASLPS G  +LRHREN + LGTD EH +L AE+P+Y+
Sbjct:  315 VAPSEYMVRPPQAPVYMFVIDVSYNAVASGAVAATVEAIKASLDSLPGEARTQVGFLTYDSTIHFYNLKSTLSAPQMLVVSDIAEPFLPVPDDLLVNLSDSRTVVDALLDSLPD---MFAGTSIVESCMGPALLSAHAVMKHIGGKMIVLQASLPSLGPGKLRHRENAKLLGTDSEHSMLNAEDPFYK 499
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BLAST of mRNA_H-elongata_contig83929.16005.1 vs. uniprot
Match: A0A8J2SWF0_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2SWF0_9STRA)

HSP 1 Score: 224 bits (570), Expect = 2.300e-64
Identity = 116/183 (63.39%), Postives = 139/183 (75.96%), Query Frame = 1 
Query:    1 VAPSEYMVRPPQPPVYMFVIDVSAPAVVSGMVHVAAETIKTCLDLLPGGERTMVGFCTFDSNVHYYNLKAGLSQPQMLVVPDHADPLVPVPDDLVVNLSESRAVVDALLENLHQASRMHSGNRDAECCLGPALTAAGKVMGHLGGKMVVLCASLPSTGEARLRHRENPRALGTDREHLLLKAE 549
            VAP EYMVRPPQPPVY+F +DVSAP+V SG+V+VAA TIK CLD LPG  RT V   T+DS+VH+YNLKA L QP ML VPD  D  VP+PDDL+VNL+ESR  +D LL++L Q   MHSG+     CLG ALTAA +VMGH+GGK+ V  + LP+ GEA L++RENPRA GTD E +LL AE
Sbjct:  583 VAPGEYMVRPPQPPVYVFAVDVSAPSVASGLVNVAASTIKKCLDSLPGAPRTQVAVVTYDSSVHFYNLKASLKQPSMLTVPDLTDLFVPLPDDLLVNLAESRESIDMLLDSLPQ---MHSGSPSPASCLGAALTAAYRVMGHVGGKLCVFQSQLPNCGEAALKNRENPRAYGTDGERMLLLAE 762
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BLAST of mRNA_H-elongata_contig83929.16005.1 vs. uniprot
Match: A0A7S2C193_9STRA (Hypothetical protein (Fragment) n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2C193_9STRA)

HSP 1 Score: 201 bits (512), Expect = 2.000e-62
Identity = 104/176 (59.09%), Postives = 131/176 (74.43%), Query Frame = 1 
Query:   43 VYMFVIDVSAPAVVSGMVHVAAETIKTCLDLLPG--GERTMVGFCTFDSNVHYYNLKAGLSQPQMLVVPDHADPLVPVPDDLVVNLSESRAVVDALLENLHQASRMHSGNRDAECCLGPALTAAGKVMGHLGGKMVVLCASLPSTGEARLRHRENPRALGTDREHLLLKAENPWYQ 564
            VY+FV+DVSA AV SGM++ A  TIK CLD LPG  G RT VGF  FDS VH++NLK+ LSQPQML VPD A+  +P+PDDL+VNL++ R VVDALL+ L     M +  R  +C LGPAL AA ++  H+GGKMVV  ++LPS GEARL+HRENPRALG+D+EH++L     WY+
Sbjct:    2 VYVFVMDVSAGAVSSGMLNCAVATIKECLDELPGVAGGRTQVGFLAFDSAVHFFNLKSSLSQPQMLTVPDLAELFLPLPDDLLVNLTDCRHVVDALLDAL---PTMFASTRKLDCALGPALVAANRIQSHIGGKMVVFLSNLPSVGEARLKHRENPRALGSDKEHVMLNPSEEWYK 174
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BLAST of mRNA_H-elongata_contig83929.16005.1 vs. uniprot
Match: A0A2D4BP64_PYTIN (Putative vesicle coat complex COPII subunit SEC24/subunit SFB2 n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4BP64_PYTIN)

HSP 1 Score: 215 bits (548), Expect = 1.820e-61
Identity = 110/188 (58.51%), Postives = 140/188 (74.47%), Query Frame = 1 
Query:    1 VAPSEYMVRPPQPPVYMFVIDVSAPAVVSGMVHVAAETIKTCLDLLPGGERTMVGFCTFDSNVHYYNLKAGLSQPQMLVVPDHADPLVPVPDDLVVNLSESRAVVDALLENLHQASRMHSGNRDAECCLGPALTAAGKVMGHLGGKMVVLCASLPSTGEARLRHRENPRALGTDREHLLLKAENPWYQ 564
            VAPSEYM+RPPQPP YMFVIDVSAPAV SG V +A ETIK  LD LPG  RT VGF T+DS +H+YNLK+ L  PQM+V+ D  +  +P+PDDL+VNLS+SR VVDALL++L     +H   R AE  LGPA+  A K+M  +GGKM+V  +SLP++G   L+HR+NPR +GTD+EH LL A + +Y+
Sbjct:  474 VAPSEYMMRPPQPPCYMFVIDVSAPAVSSGAVQIAVETIKEQLDNLPGAPRTRVGFLTYDSTIHFYNLKSTLKTPQMMVIADLEELFIPIPDDLLVNLSDSREVVDALLDSL---PAIHQNARSAETALGPAIRVAFKLMSSIGGKMMVFQSSLPTSGVGALKHRDNPRLIGTDKEHSLLNAADTFYR 658
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BLAST of mRNA_H-elongata_contig83929.16005.1 vs. uniprot
Match: T0QMG2_SAPDV (Uncharacterized protein n=1 Tax=Saprolegnia diclina (strain VS20) TaxID=1156394 RepID=T0QMG2_SAPDV)

HSP 1 Score: 213 bits (541), Expect = 3.290e-61
Identity = 109/188 (57.98%), Postives = 143/188 (76.06%), Query Frame = 1 
Query:    1 VAPSEYMVRPPQPPVYMFVIDVSAPAVVSGMVHVAAETIKTCLDLLPGGERTMVGFCTFDSNVHYYNLKAGLSQPQMLVVPDHADPLVPVPDDLVVNLSESRAVVDALLENLHQASRMHSGNRDAECCLGPALTAAGKVMGHLGGKMVVLCASLPSTGEARLRHRENPRALGTDREHLLLKAENPWYQ 564
            VA SEYM+RPP PPVY+FVIDVSA A+ SGMV VAAETI++ LD LPG  RT  G  T+DS VH+YNLKAGL  PQM++VPD  +  +P+PD+L+VNLS+SR V+++LLE L    RMH G R+ + CLGPA+ AA ++M  +GGKM+V  +SLP+ G+  L+HRE+ R LGTD+EH LL A + +Y+
Sbjct:  208 VASSEYMMRPPTPPVYVFVIDVSAQAIASGMVQVAAETIQSQLDSLPGDPRTRFGLITYDSAVHFYNLKAGLKTPQMMIVPDINELFIPIPDELLVNLSDSRDVIESLLEML---PRMHQGTRNPDTCLGPAIRAAFRLMTSVGGKMLVFQSSLPTAGQGALKHREDTRLLGTDKEHNLLNAVDTFYR 392
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BLAST of mRNA_H-elongata_contig83929.16005.1 vs. uniprot
Match: A0A5D6Y6G2_9STRA (Uncharacterized protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6Y6G2_9STRA)

HSP 1 Score: 212 bits (539), Expect = 2.660e-60
Identity = 107/188 (56.91%), Postives = 141/188 (75.00%), Query Frame = 1 
Query:    1 VAPSEYMVRPPQPPVYMFVIDVSAPAVVSGMVHVAAETIKTCLDLLPGGERTMVGFCTFDSNVHYYNLKAGLSQPQMLVVPDHADPLVPVPDDLVVNLSESRAVVDALLENLHQASRMHSGNRDAECCLGPALTAAGKVMGHLGGKMVVLCASLPSTGEARLRHRENPRALGTDREHLLLKAENPWYQ 564
            VAPSEYM+RPPQPP YMFV+DVSA AV SG VHVAA+TIK  LD LPG  RT VGF T+DS++H+YNLKA L  PQM+V+ D  +  +P+PD+L+VNLS+SR +++ LL++L     +H   R AE  +GPA+  A K+M  +GGKM+V  +SLPSTG+  +R+RENPR LGTD+EH LL   + +Y+
Sbjct:  422 VAPSEYMMRPPQPPCYMFVLDVSATAVQSGAVHVAAQTIKEQLDNLPGAPRTRVGFVTYDSSIHFYNLKATLKSPQMMVIADLDELFIPIPDELLVNLSDSREIIETLLDSL---PTIHQNARSAETAMGPAIRVAFKLMSSVGGKMLVFQSSLPSTGQGAVRNRENPRLLGTDKEHSLLSPTDTFYR 606
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig83929.16005.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FPJ3_ECTSI4.510e-9983.51Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A836CAX8_9STRA9.000e-7266.31Sec23/Sec24 trunk domain-containing protein n=1 Ta... [more]
A0A7S4D505_HETAK4.040e-7064.89Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A7S2W394_9STRA4.180e-6860.96Hypothetical protein (Fragment) n=1 Tax=Rhizochrom... [more]
A0A7S1CB04_9STRA4.120e-6563.30Hypothetical protein n=1 Tax=Bicosoecida sp. CB-20... [more]
A0A8J2SWF0_9STRA2.300e-6463.39Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
A0A7S2C193_9STRA2.000e-6259.09Hypothetical protein (Fragment) n=1 Tax=Florenciel... [more]
A0A2D4BP64_PYTIN1.820e-6158.51Putative vesicle coat complex COPII subunit SEC24/... [more]
T0QMG2_SAPDV3.290e-6157.98Uncharacterized protein n=1 Tax=Saprolegnia diclin... [more]
A0A5D6Y6G2_9STRA2.660e-6056.91Uncharacterized protein n=1 Tax=Pythium brassicum ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig83929contigH-elongata_contig83929:754..2676 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score307.4
Seed ortholog evalue4.5e-81
Seed eggNOG ortholog2880.D7FPJ3
Preferred nameSEC24B
KEGG koko:K14007
KEGG Pathwayko04141,map04141
KEGG ModuleM00404
GOsGO:0000322,GO:0000323,GO:0000324,GO:0000329,GO:0002376,GO:0002474,GO:0002478,GO:0002495,GO:0002504,GO:0002791,GO:0002793,GO:0003674,GO:0005048,GO:0005215,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005773,GO:0005774,GO:0005783,GO:0005789,GO:0005798,GO:0005829,GO:0006810,GO:0006886,GO:0006888,GO:0006900,GO:0006901,GO:0006903,GO:0006914,GO:0006996,GO:0008104,GO:0008150,GO:0008152,GO:0008270,GO:0009056,GO:0009889,GO:0009987,GO:0010556,GO:0010869,GO:0012505,GO:0012506,GO:0012507,GO:0015031,GO:0015833,GO:0016020,GO:0016043,GO:0016050,GO:0016192,GO:0016236,GO:0019222,GO:0019882,GO:0019884,GO:0019886,GO:0022607,GO:0030117,GO:0030120,GO:0030127,GO:0030133,GO:0030134,GO:0030135,GO:0030658,GO:0030659,GO:0030660,GO:0030662,GO:0031090,GO:0031323,GO:0031410,GO:0031982,GO:0031984,GO:0032879,GO:0032880,GO:0032991,GO:0033036,GO:0033218,GO:0034613,GO:0034622,GO:0035459,GO:0042175,GO:0042277,GO:0042592,GO:0042632,GO:0042886,GO:0043167,GO:0043169,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043933,GO:0044085,GO:0044237,GO:0044248,GO:0044422,GO:0044424,GO:0044425,GO:0044432,GO:0044433,GO:0044437,GO:0044444,GO:0044446,GO:0044464,GO:0045184,GO:0045714,GO:0046872,GO:0046907,GO:0046914,GO:0048002,GO:0048193,GO:0048194,GO:0048199,GO:0048207,GO:0048208,GO:0048475,GO:0048518,GO:0048522,GO:0048878,GO:0050708,GO:0050714,GO:0050789,GO:0050794,GO:0051046,GO:0051047,GO:0051049,GO:0051050,GO:0051171,GO:0051179,GO:0051222,GO:0051223,GO:0051234,GO:0051246,GO:0051640,GO:0051641,GO:0051648,GO:0051649,GO:0051650,GO:0051656,GO:0051668,GO:0055088,GO:0055092,GO:0060255,GO:0061024,GO:0061919,GO:0065003,GO:0065007,GO:0065008,GO:0070201,GO:0070727,GO:0070971,GO:0071702,GO:0071705,GO:0071840,GO:0080090,GO:0090087,GO:0090110,GO:0090114,GO:0097708,GO:0098588,GO:0098796,GO:0098805,GO:0098827,GO:0098852,GO:1903530,GO:1903532,GO:1904951
EggNOG free text desc.ER to Golgi vesicle-mediated transport
EggNOG OGsCOG5028@1,KOG1985@2759
COG Functional cat.U
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko04131
Hectar predicted targeting categoryother localisation
Exons3
Model size564
Cds size546
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig83929.16005.1prot_H-elongata_contig83929.16005.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig83929 772..2676 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931244.1303654-UTR-H-elongata_contig83929:753..7711622931244.1303654-UTR-H-elongata_contig83929:753..771Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig83929 754..771 +
1691679757.0845304-UTR-H-elongata_contig83929:753..7711691679757.0845304-UTR-H-elongata_contig83929:753..771Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig83929 754..771 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931244.1516979-CDS-H-elongata_contig83929:771..9121622931244.1516979-CDS-H-elongata_contig83929:771..912Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig83929 772..912 +
1691679757.1074378-CDS-H-elongata_contig83929:771..9121691679757.1074378-CDS-H-elongata_contig83929:771..912Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig83929 772..912 +
1622931244.1714702-CDS-H-elongata_contig83929:1548..17401622931244.1714702-CDS-H-elongata_contig83929:1548..1740Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig83929 1549..1740 +
1691679757.1171536-CDS-H-elongata_contig83929:1548..17401691679757.1171536-CDS-H-elongata_contig83929:1548..1740Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig83929 1549..1740 +
1622931244.1970463-CDS-H-elongata_contig83929:2463..26761622931244.1970463-CDS-H-elongata_contig83929:2463..2676Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig83929 2464..2676 +
1691679757.1293504-CDS-H-elongata_contig83929:2463..26761691679757.1293504-CDS-H-elongata_contig83929:2463..2676Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig83929 2464..2676 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig83929.16005.1

>prot_H-elongata_contig83929.16005.1 ID=prot_H-elongata_contig83929.16005.1|Name=mRNA_H-elongata_contig83929.16005.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=182bp
MVRPPQPPVYMFVIDVSAPAVVSGMVHVAAETIKTCLDLLPGGERTMVGF
CTFDSNVHYYNLKAGLSQPQMLVVPDHADPLVPVPDDLVVNLSESRAVVD
ALLENLHQASRMHSGNRDAECCLGPALTAAGKVMGHLGGKMVVLCASLPS
TGEARLRHRENPRALGTDREHLLLKAENPWYQ
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mRNA from alignment at H-elongata_contig83929:754..2676+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig83929.16005.1 ID=mRNA_H-elongata_contig83929.16005.1|Name=mRNA_H-elongata_contig83929.16005.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1923bp|location=Sequence derived from alignment at H-elongata_contig83929:754..2676+ (Himanthalia elongata Himel1 dioecious)
GTGGCACCGTCGGAGTATATGGTGCGCCCGCCGCAGCCTCCGGTGTACAT
GTTCGTGATTGACGTGTCTGCCCCCGCTGTCGTAAGCGGCATGGTTCACG
TCGCGGCGGAAACGATCAAGACGTGTTTGGACCTCTTGCCAGGGGGAGAA
CGGACTATGGTGAGACGGAGAAATGGGGGGCGAGGGATTGGGGTTGGGGG
CGGGGGGCGGAGGAGGGACCAAAGTCGCCGCCTCTGCGCTGACGAATGCA
ATAGTAAATTATGTGTATGTAGTACATGCTAGGCTGGAACGCGCCCTTGA
AACAAATATCGTGGCTTCGTTTCTGGCGATAGATATTTTTTATTCCCTCC
CATGCATTGTTTAGGAAGCCTTGACTATTTTGAAGATGCATGGAAGGTAG
CTGTGATAGGGTATATGCCGGGCATTGCTGTGTTCTGATTGATTGCCTGT
CATGGAGAGAAATAAGGATCATAAGTCTGGAGTTTGATTCGCGCTGCTTG
TTTCGAGCTCTGGATCGAGGTCAAGTTCGCTATTTTTTCGCGAGTCACCA
AGGGTCGGTCTCTCCTGCCATACTGTACACACGCGCGTTTTTCTTACACA
CAAGTACCCGCTCATCGCGGCCCTGAATATCTGTGGTGCCGATTGGACGC
TTTTTCTTGTCCCTACCTCCTCCTGCATGCACGTCTGTCGGAGTCGGCTA
TTAGGAACAAAAGAATTGAACGAAATTGCGATCATGACAAACTCATTCCC
TCTCCTTTCCTCGGTTTGATCTTCTTATATTTTGTTCCTTTCAAGGTGGG
GTTCTGCACGTTCGACAGCAACGTGCACTACTACAACCTCAAGGCCGGCC
TGTCCCAGCCCCAGATGCTGGTGGTGCCCGATCACGCCGACCCCTTGGTG
CCGGTGCCGGACGATCTCGTCGTCAACCTCAGCGAAAGCCGCGCCGTGGT
GGACGCGCTGCTTGAAAACCTTCATCAGGCGAGTCGCGTGCGTGGATGCG
ATCGACAGACAGTCAGTTATACACAAGACATGCAGAGTTGATCGATTCTT
CCCTCGGCTGTGATTTCGCGCAAGAGTGAGTGGCGGGAGAGTTCTGGAGG
GGAGGGGGGGCATTTTGTCTTTTTGGATCTGTGCACCCTCATGTGTTGTT
TGATTTTAACGGTGTTTTGTTTTTTTTACTCAATGGATAGGCCATTCAAA
TGTGCTATAATTAGACTATCGTTACCTAAGGGATCAGTCCCCATCTCTCT
CTGGTCATATTAAAGATAGGAACTCCCTCCCACACCTCTTCCATAAATAG
TTGAACTTCGCTTTTGCTGCATTCTGGTTCGGTTATAACGTTTTCCGCCA
CTGAATTTCCGGGCCACTAACTGCTTACTCACGTGGTTCACCACCACACT
ATTTAGTAATATAGCCACTAAGCTACTATTAATAAGCAACTACTCGGGGG
ACGAGTATACTGTACTCTATGCTGTATGCTATATATATATAATGAGTTGG
TGATGTCTCTCACAATTGAAAATAGTAAGATGAAAGCATGAGAGCCCTGA
ACCGGTCGCGCGTGTGCGTGTGTTCCTTCGCAAGTTTATGCGTATGTAAT
TATTAAAATACACATGACCGGCGCAATCCGTTAATTGTCATTATAGGCTA
CATGCTTGGAGTATTTTTAGCGTGTGATGCGATGATAACTCGGATCGATT
TGTGTGGCAGATGCACTCGGGAAACCGAGATGCGGAGTGCTGCCTCGGAC
CGGCCCTGACGGCAGCCGGTAAGGTGATGGGACACTTGGGTGGCAAGATG
GTGGTTTTGTGTGCCAGCCTGCCGTCCACGGGCGAGGCGCGGCTCAGGCA
CCGAGAGAACCCGCGAGCGCTGGGGACCGACCGAGAGCATCTCCTGCTCA
AAGCCGAAAACCCTTGGTACCAG
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Coding sequence (CDS) from alignment at H-elongata_contig83929:754..2676+

>mRNA_H-elongata_contig83929.16005.1 ID=mRNA_H-elongata_contig83929.16005.1|Name=mRNA_H-elongata_contig83929.16005.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1092bp|location=Sequence derived from alignment at H-elongata_contig83929:754..2676+ (Himanthalia elongata Himel1 dioecious)
ATGGTGCGCCCGCCGCAGCCTCCGGTGTACATGTTCGTGATTGACGTGTC
TGCCCCCGCTGTCGTAAGCGGCATGGTTCACGTCGCGGCGGAAACGATCA
AGACGTGTTTGGACCTCTTGCCAGGGGGAGAACGGACTATGATGGTGCGC
CCGCCGCAGCCTCCGGTGTACATGTTCGTGATTGACGTGTCTGCCCCCGC
TGTCGTAAGCGGCATGGTTCACGTCGCGGCGGAAACGATCAAGACGTGTT
TGGACCTCTTGCCAGGGGGAGAACGGACTATGGTGGGGTTCTGCACGTTC
GACAGCAACGTGCACTACTACAACCTCAAGGCCGGCCTGTCCCAGCCCCA
GATGCTGGTGGTGCCCGATCACGCCGACCCCTTGGTGCCGGTGCCGGACG
ATCTCGTCGTCAACCTCAGCGAAAGCCGCGCCGTGGTGGACGCGCTGCTT
GAAAACCTTCATCAGGCGAGTCGCGTGGGGTTCTGCACGTTCGACAGCAA
CGTGCACTACTACAACCTCAAGGCCGGCCTGTCCCAGCCCCAGATGCTGG
TGGTGCCCGATCACGCCGACCCCTTGGTGCCGGTGCCGGACGATCTCGTC
GTCAACCTCAGCGAAAGCCGCGCCGTGGTGGACGCGCTGCTTGAAAACCT
TCATCAGGCGAGTCGCATGCACTCGGGAAACCGAGATGCGGAGTGCTGCC
TCGGACCGGCCCTGACGGCAGCCGGTAAGGTGATGGGACACTTGGGTGGC
AAGATGGTGGTTTTGTGTGCCAGCCTGCCGTCCACGGGCGAGGCGCGGCT
CAGGCACCGAGAGAACCCGCGAGCGCTGGGGACCGACCGAGAGCATCTCC
TGCTCAAAGCCGAAAACCCTTGGTACCAGATGCACTCGGGAAACCGAGAT
GCGGAGTGCTGCCTCGGACCGGCCCTGACGGCAGCCGGTAAGGTGATGGG
ACACTTGGGTGGCAAGATGGTGGTTTTGTGTGCCAGCCTGCCGTCCACGG
GCGAGGCGCGGCTCAGGCACCGAGAGAACCCGCGAGCGCTGGGGACCGAC
CGAGAGCATCTCCTGCTCAAAGCCGAAAACCCTTGGTACCAG
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