mRNA_H-elongata_contig83916.16003.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig83916.16003.1
Unique NamemRNA_H-elongata_contig83916.16003.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig83916.16003.1 vs. uniprot
Match: A0A6H5K714_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K714_9PHAE)

HSP 1 Score: 265 bits (677), Expect = 7.300e-76
Identity = 155/239 (64.85%), Postives = 174/239 (72.80%), Query Frame = 1 
Query:  430 PPPIVSLDEMARADAAEKKRKRKARPAGKKVGWADRAGKTLQVVKEFHPEDAVLVVSEAPQEDAPGVNEAALLHSQHHHTEHWAERVKREREMERKFHGKTGGRGR-RGHEGSASAGREDENARPGVAGVELAAAI-------RRKPMVPTMSWRRPGPYQEGVVHEFVITLEVESSEAESQAARTRVGLEVVYLSSGDIPPSPAEPDAASFLPVGEPCIATYEIPFYMETELEQMQLD 1122
            PPPIVSLDEMARA++ EKKR RKA+PAGKKVGWADRAG+TLQVVKEFH EDA   VSE PQE    V  AA + S H    HWAERVKREREMERKFHGK+GGR + +   G ASAG E+                       +RKPMV  + WRRPGPY++GVVHE V+ LEVESSEAESQ ARTR GLE VYLSSGDIP +PAEPDAASFLPV E  +  Y+IPFYME+ELEQMQ +
Sbjct:  567 PPPIVSLDEMARAESEEKKRLRKAKPAGKKVGWADRAGRTLQVVKEFHSEDAATAVSETPQESDSVV--AATMASHHAGHRHWAERVKREREMERKFHGKSGGRSKGKSDHGRASAGDEEXXXXXXXXXXXXXXXXXXXXXXXKRKPMVTAVPWRRPGPYEKGVVHEDVLQLEVESSEAESQGARTRAGLEQVYLSSGDIPSTPAEPDAASFLPVDE--VQMYKIPFYMESELEQMQAE 801
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BLAST of mRNA_H-elongata_contig83916.16003.1 vs. uniprot
Match: D8LNV8_ECTSI (TFIIS N-terminal domain-containing protein (Fragment) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LNV8_ECTSI)

HSP 1 Score: 239 bits (611), Expect = 2.110e-69
Identity = 149/263 (56.65%), Postives = 167/263 (63.50%), Query Frame = 1 
Query:  430 PPPIVSLDEMARADAAEKKRKRKARPAGKKVGWADRAGKTLQ---------------------VVKEFHPEDAVLVVSEAPQE-DAPGVNEAALLHSQHHHTEHWAERVKREREMERKFHGKTGGRGRRGHEGSASAGREDENARPGVAGVELAAAI----------RRKPMVPTMSWRRPGPYQEGVVHEFVITLEVESSEAESQAARTRVGLEVVYLSSGDIPPSPAEPDAASFLPVGEPCIATYEIPFYMETELEQMQLD 1122
            PPPIVSLDEMARA++ EKKR RKA+PAGKKVGWADRAG+TLQ                     VVKEFH EDA   VSE PQE D+      A  H+ H H   WAERVKREREMERKFHGK+GGR +                                       +RKPMV T+ WRRPGPY++GVVHE V+ LEVESSEAESQ ARTR GLE VYLSSGDIP +PAEPDAASFLPV E  +  Y+IPFYME+ELEQMQ +
Sbjct:  335 PPPIVSLDEMARAESEEKKRLRKAKPAGKKVGWADRAGRTLQESVEGRRLMLMNHPGTRRALQVVKEFHSEDAATAVSETPQESDSVAATTMASHHAGHRH---WAERVKREREMERKFHGKSGGRSKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRKKRKPMVTTVPWRRPGPYEKGVVHEDVLQLEVESSEAESQGARTRAGLEQVYLSSGDIPSTPAEPDAASFLPVDE--VQMYKIPFYMESELEQMQAE 592
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig83916.16003.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5K714_9PHAE7.300e-7664.85Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LNV8_ECTSI2.110e-6956.65TFIIS N-terminal domain-containing protein (Fragme... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig83916contigH-elongata_contig83916:394..2352 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size1149
Cds size1149
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig83916.16003.1prot_H-elongata_contig83916.16003.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig83916 394..2352 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931243.9939096-CDS-H-elongata_contig83916:393..13741622931243.9939096-CDS-H-elongata_contig83916:393..1374Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig83916 394..1374 +
1691679757.0253863-CDS-H-elongata_contig83916:393..13741691679757.0253863-CDS-H-elongata_contig83916:393..1374Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig83916 394..1374 +
1622931244.0132-CDS-H-elongata_contig83916:1684..17701622931244.0132-CDS-H-elongata_contig83916:1684..1770Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig83916 1685..1770 +
1691679757.03525-CDS-H-elongata_contig83916:1684..17701691679757.03525-CDS-H-elongata_contig83916:1684..1770Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig83916 1685..1770 +
1622931244.0322778-CDS-H-elongata_contig83916:2270..23521622931244.0322778-CDS-H-elongata_contig83916:2270..2352Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig83916 2271..2352 +
1691679757.0563102-CDS-H-elongata_contig83916:2270..23521691679757.0563102-CDS-H-elongata_contig83916:2270..2352Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig83916 2271..2352 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig83916.16003.1

>prot_H-elongata_contig83916.16003.1 ID=prot_H-elongata_contig83916.16003.1|Name=mRNA_H-elongata_contig83916.16003.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=383bp
ARFFPGRKFPTRGMRGGRGSVPRGAGGVAAGRGGAATGGGGRTSGILKVS
VTPSPSSEGGVGAGKVICAAGDSDSTPAPASATTATATVAVVTGPTDSKE
VGAEVVSSAASASAQTLASAEGKSEGATPAVGGGGDGGEPAPGPPPIVSL
DEMARADAAEKKRKRKARPAGKKVGWADRAGKTLQVVKEFHPEDAVLVVS
EAPQEDAPGVNEAALLHSQHHHTEHWAERVKREREMERKFHGKTGGRGRR
GHEGSASAGREDENARPGVAGVELAAAIRRKPMVPTMSWRRPGPYQEGVV
HEFVITLEVESSEAESQAARTRVGLEVVYLSSGDIPPSPAEPDAASFLPV
GEPCIATYEIPFYMETELEQMQLDQERLEQERQ
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mRNA from alignment at H-elongata_contig83916:394..2352+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig83916.16003.1 ID=mRNA_H-elongata_contig83916.16003.1|Name=mRNA_H-elongata_contig83916.16003.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1959bp|location=Sequence derived from alignment at H-elongata_contig83916:394..2352+ (Himanthalia elongata Himel1 dioecious)
GCGAGATTTTTCCCGGGAAGGAAGTTTCCCACCAGGGGCATGAGGGGCGG
GAGGGGCTCCGTCCCGCGAGGAGCTGGGGGCGTAGCGGCCGGACGAGGTG
GTGCTGCAACAGGTGGAGGCGGGCGTACTAGCGGCATCTTAAAGGTTTCA
GTCACCCCATCTCCCTCCAGCGAAGGAGGTGTGGGCGCGGGGAAAGTGAT
ATGCGCAGCTGGAGACAGCGACAGCACGCCAGCGCCGGCTTCAGCGACAA
CCGCTACCGCCACTGTGGCGGTGGTGACGGGTCCCACGGATTCCAAGGAA
GTGGGCGCGGAGGTTGTCTCCTCTGCAGCCTCCGCGTCTGCGCAAACGCT
GGCGTCGGCGGAGGGTAAAAGTGAAGGGGCAACGCCTGCGGTTGGCGGGG
GGGGAGATGGAGGTGAGCCGGCCCCGGGGCCGCCGCCCATCGTGTCGTTG
GACGAGATGGCGCGCGCGGATGCGGCAGAGAAGAAGCGCAAGCGAAAGGC
GCGACCGGCGGGGAAGAAGGTGGGCTGGGCAGACCGCGCAGGCAAAACGC
TGCAAGTGGTGAAGGAGTTCCACCCGGAAGATGCGGTGTTAGTTGTGTCG
GAGGCGCCGCAGGAGGACGCCCCGGGAGTCAACGAAGCGGCTCTGCTGCA
TAGCCAACACCACCACACGGAGCACTGGGCCGAGAGGGTCAAGCGCGAGA
GGGAGATGGAGAGGAAGTTCCACGGAAAGACGGGGGGCAGGGGCAGGAGA
GGCCACGAGGGGAGCGCTTCTGCCGGAAGGGAGGACGAAAATGCGAGGCC
AGGGGTGGCGGGGGTGGAGCTTGCCGCGGCTATCCGGAGGAAGCCCATGG
TGCCAACAATGTCCTGGCGACGCCCCGGTCCGTACCAGGAGGGCGTCGTC
CATGAGTTCGTCATTACGCTGGAGGTGGAGTCCAGCGAGGCGGAGAGCCA
GGCGGCGAGGACGAGGGTGGGGCTCGAAGTGGTAAGGGATTCTTGGTAAG
GGGAGAGGGACAATGTTTTCCTTCCTACGATACCTTGTGATTTCTTTGTG
TACCCCGGCGATGAATCTATCGACCAAGGGGACTCCAAGCTACACCTGTA
GCGTACTCTAGCGTAAAGCTAAACCCTCGTGCGCGTGCGCTGGTTCATTT
TTTTGCTGTCGCAGCAATACCGCACGTGCACGGGAAAAAGGGAGAGTTAA
CTTTCTCTACCCTCCCTCCCTCCCACGCTACGTGTTTGTAACCGTCTGTT
CGTGTGGTGACTTCTGGCGTTCCTCTCTGCACCTTCTACAGGTGTACCTC
TCGAGCGGTGATATCCCGCCGTCTCCCGCCGAGCCAGATGCGGCCTCGTT
CTTACCTGTCGGTGAGCCTTGCATTGCGTTTAGACCCCCGTCCAAACCCC
GTCCAAACCCCCCGCCCTAGCGCCGCAGTCGAGTCTCTTTCGGGGTGCCA
CGGTCGAACAAAGCATAACAATGCTAAGCTCGCAGCACTGAGAGCCTTAG
GGGATAAAGGGGGAGATTTGATATTTGTAATCTCGACCGGCGTATCCTTC
TTTTGTGCAAAGCATTTTTCTCTCCCATCATAGGGAGTTGATGGATAGGG
AGGCATATTCAATGAGAGCGCTACACTCGGCTGTAAGAAGCGTCCGATGC
AAAATACTACTGTATTTTTTTTCGTTCGAAGGTTCCGCCTTCTTGACCAA
AATATGTCATCCGATAGTTTTCCAGCTGAAGAGCGACGCCTGGCCCCGAC
CAAGGGTTTCTACAATGGCGTATTTTCGAGGCGTTCGTCTTTACTCGACA
CTACTGCCGCCCCGCCCCTCACGGCTCTCCGTACCTATCCTATCTATCCT
ATCCTTTGCAGACGGCACTAGCTCGAGTACTTACGAGATCCCATTCTACA
TGGAGACTGAGCTGGAGCAGATGCAGCTCGACCAGGAGAGGCTGGAACAG
GAGAGGCAA
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Coding sequence (CDS) from alignment at H-elongata_contig83916:394..2352+

>mRNA_H-elongata_contig83916.16003.1 ID=mRNA_H-elongata_contig83916.16003.1|Name=mRNA_H-elongata_contig83916.16003.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=2298bp|location=Sequence derived from alignment at H-elongata_contig83916:394..2352+ (Himanthalia elongata Himel1 dioecious)
GCGAGATTTTTCCCGGGAAGGAAGTTTCCCACCAGGGGCATGAGGGGCGG
GAGGGGCTCCGTCCCGCGAGGAGCTGGGGGCGTAGCGGCCGGACGAGGTG
GTGCTGCAACAGGTGGAGGCGGGCGTACTAGCGGCATCTTAAAGGTTTCA
GTCACCCCATCTCCCTCCAGCGAAGGAGGTGTGGGCGCGGGGAAAGTGAT
ATGCGCAGCTGGAGACAGCGACAGCACGCCAGCGCCGGCTTCAGCGACAA
CCGCTACCGCCACTGTGGCGGTGGTGACGGGTCCCACGGATTCCAAGGAA
GTGGGCGCGGAGGTTGTCTCCTCTGCAGCCTCCGCGTCTGCGCAAACGCT
GGCGTCGGCGGAGGGTAAAAGTGAAGGGGCAACGCCTGCGGTTGGCGGGG
GGGGAGATGGAGGTGAGCCGGCCCCGGGGCCGCCGCCCATCGTGTCGTTG
GACGAGATGGCGCGCGCGGATGCGGCAGAGAAGAAGCGCAAGCGAAAGGC
GCGACCGGCGGGGAAGAAGGTGGGCTGGGCAGACCGCGCAGGCAAAACGC
TGCAAGTGGTGAAGGAGTTCCACCCGGAAGATGCGGTGTTAGTTGTGTCG
GAGGCGCCGCAGGAGGACGCCCCGGGAGTCAACGAAGCGGCTCTGCTGCA
TAGCCAACACCACCACACGGAGCACTGGGCCGAGAGGGTCAAGCGCGAGA
GGGAGATGGAGAGGAAGTTCCACGGAAAGACGGGGGGCAGGGGCAGGAGA
GGCCACGAGGGGAGCGCTTCTGCCGGAAGGGAGGACGAAAATGCGAGGCC
AGGGGTGGCGGGGGTGGAGCTTGCCGCGGCTATCCGGAGGAAGCCCATGG
TGCCAACAATGTCCTGGCGACGCCCCGGTCCGTACCAGGAGGGCGTCGTC
CATGAGTTCGTCATTACGCTGGAGGTGGAGTCCAGCGAGGCGGAGAGCCA
GGCGGCGAGGACGAGGGTGGGGCTCGAAGTGGCGAGATTTTTCCCGGGAA
GGAAGTTTCCCACCAGGGGCATGAGGGGCGGGAGGGGCTCCGTCCCGCGA
GGAGCTGGGGGCGTAGCGGCCGGACGAGGTGGTGCTGCAACAGGTGGAGG
CGGGCGTACTAGCGGCATCTTAAAGGTTTCAGTCACCCCATCTCCCTCCA
GCGAAGGAGGTGTGGGCGCGGGGAAAGTGATATGCGCAGCTGGAGACAGC
GACAGCACGCCAGCGCCGGCTTCAGCGACAACCGCTACCGCCACTGTGGC
GGTGGTGACGGGTCCCACGGATTCCAAGGAAGTGGGCGCGGAGGTTGTCT
CCTCTGCAGCCTCCGCGTCTGCGCAAACGCTGGCGTCGGCGGAGGGTAAA
AGTGAAGGGGCAACGCCTGCGGTTGGCGGGGGGGGAGATGGAGGTGAGCC
GGCCCCGGGGCCGCCGCCCATCGTGTCGTTGGACGAGATGGCGCGCGCGG
ATGCGGCAGAGAAGAAGCGCAAGCGAAAGGCGCGACCGGCGGGGAAGAAG
GTGGGCTGGGCAGACCGCGCAGGCAAAACGCTGCAAGTGGTGAAGGAGTT
CCACCCGGAAGATGCGGTGTTAGTTGTGTCGGAGGCGCCGCAGGAGGACG
CCCCGGGAGTCAACGAAGCGGCTCTGCTGCATAGCCAACACCACCACACG
GAGCACTGGGCCGAGAGGGTCAAGCGCGAGAGGGAGATGGAGAGGAAGTT
CCACGGAAAGACGGGGGGCAGGGGCAGGAGAGGCCACGAGGGGAGCGCTT
CTGCCGGAAGGGAGGACGAAAATGCGAGGCCAGGGGTGGCGGGGGTGGAG
CTTGCCGCGGCTATCCGGAGGAAGCCCATGGTGCCAACAATGTCCTGGCG
ACGCCCCGGTCCGTACCAGGAGGGCGTCGTCCATGAGTTCGTCATTACGC
TGGAGGTGGAGTCCAGCGAGGCGGAGAGCCAGGCGGCGAGGACGAGGGTG
GGGCTCGAAGTGGTGTACCTCTCGAGCGGTGATATCCCGCCGTCTCCCGC
CGAGCCAGATGCGGCCTCGTTCTTACCTGTCGGTGAGCCTTGCATTGCGT
GTACCTCTCGAGCGGTGATATCCCGCCGTCTCCCGCCGAGCCAGATGCGG
CCTCGTTCTTACCTGTCGGTGAGCCTTGCATTGCTACTTACGAGATCCCA
TTCTACATGGAGACTGAGCTGGAGCAGATGCAGCTCGACCAGGAGAGGCT
GGAACAGGAGAGGCAATACTTACGAGATCCCATTCTACATGGAGACTGAG
CTGGAGCAGATGCAGCTCGACCAGGAGAGGCTGGAACAGGAGAGGCAA
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