mRNA_H-elongata_contig83907.16002.1 (mRNA) Himanthalia elongata Himel1 dioecious
|
Overview
Homology
BLAST of mRNA_H-elongata_contig83907.16002.1 vs. uniprot
Match: D7FQB3_ECTSI (Glucosidase 2 subunit beta n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FQB3_ECTSI) HSP 1 Score: 275 bits (703), Expect = 3.350e-84 Identity = 146/229 (63.76%), Postives = 173/229 (75.55%), Query Frame = 1
Query: 13 RYPTLRWLVTSWDMFLSPEGSGRFLMVMWDAPVALWGLLFPELDVEHQRPEAAMLREGIARAKESLRQRGEERNGIAQAAGKRGKGGRRKREETEARRLLDLDLGKDSGFAALAEKCLDLQQGGYVYSLCPFKEAKQDKHSLGKWKGWAPR---RNRRDHDYRAMLFDGGSRCHNKKQRSAEVLVECGPHDALVAAEELEIGVYRLAMETPLACTEGNVREAEQRLEVF 690
RYPTLR +V WD FL G+G+ L+VMWDAPVALW FP D +H+RPEAAMLREGIARA+ L+++ + G RG G+R+REE+EA+RL LDLG+ S FAALAEKCLDL++GGY+YSLCPFKEAKQDKHSLG+W+GW P R R D R MLFDGGSRCHN KQRS EV V+CG DALVAAEE+EIG YRL +ETPLACTE ++ EAE+ LE
Sbjct: 517 RYPTLRSVVLHWDEFL--HGNGKSLLVMWDAPVALWDFCFPYRDDKHERPEAAMLREGIARARAILQEKKPDTAG-------RGGRGKRRREESEAKRLSGLDLGEGSRFAALAEKCLDLEEGGYLYSLCPFKEAKQDKHSLGRWRGWGPGGRGRAGRGRD-RVMLFDGGSRCHNNKQRSCEVSVQCGSEDALVAAEEIEIGTYRLRLETPLACTEAHLAEAERGLEAL 735
BLAST of mRNA_H-elongata_contig83907.16002.1 vs. uniprot
Match: A0A6H5JF29_9PHAE (MRH domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JF29_9PHAE) HSP 1 Score: 257 bits (656), Expect = 1.410e-79 Identity = 142/232 (61.21%), Postives = 164/232 (70.69%), Query Frame = 1
Query: 13 RYPTLRWLVTSWDMFLSPEGSGRFLMVMWDAPVALWGLLFPELDVEHQRPEAAMLREGIARAKESLRQRGEERNGIAQAAGKRGKGGRRKREETEARRLLDLDLGKDSGFAALAEKCLDLQQGGYVYSLCPFKEAKQDKHSLGKWKGWA------PRRNRRDHDYRAMLFDGGSRCHNKKQRSAEVLVECGPHDALVAAEELEIGVYRLAMETPLACTEGNVREAEQRLEVF 690
RYPTLR +V WD FL G+G+FL+VMWDAPVALW FP D E++RPEAAMLREGIARA+ L++R + G EE+EA+RL LDLG+ S FAALA KCLDL++GGY+YSLCPFK+AKQDKHSLG+W+GW P R R R MLFDGGSRCHNK QRS EV VECGP DALVAAEE+EIG Y L +ETPLACTE +V EAE LE
Sbjct: 271 RYPTLRSVVLRWDEFL--HGNGKFLLVMWDAPVALWDFCFPYRDDEYERPEAAMLREGIARARAILQERKPDTAGGXXXXXXXX-------EESEAKRLSGLDLGEGSRFAALAGKCLDLEEGGYLYSLCPFKDAKQDKHSLGRWRGWGTGGRGLPGRGRN----RVMLFDGGSRCHNK-QRSCEVSVECGPEDALVAAEEIEIGTYHLRLETPLACTEAHVAEAELGLEAL 488
BLAST of mRNA_H-elongata_contig83907.16002.1 vs. uniprot
Match: K3X1Z1_GLOUD (Glucosidase 2 subunit beta n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3X1Z1_GLOUD) HSP 1 Score: 101 bits (251), Expect = 6.130e-21 Identity = 61/194 (31.44%), Postives = 95/194 (48.97%), Query Frame = 1
Query: 91 VMWDAPVALWGLLFPELDVEHQRPEAAMLREGIARAKESLRQRGEERNGIAQAAGKRGKGGRRKREETEARRLLDLDLGKDSGFAALAEKCLDLQQGGYVYSLCPFKEAKQDKHSLGKWKGWAPRRNRRDHDYRAMLFDGGSRCHNKKQRSAEVLVECGPHDALVAAEELEIGVYRLAMETPLACTEGNVREAE 672
V WDAP+ + LFP+L+ EA LR+ + + + R+ +AA K D G + F AL ++C++ + Y Y LC F++ KQD LGKW+ W N D DY M F G +C N +RS +V + CG + +V+ +E VY + ++TPLACT+ + +A+
Sbjct: 440 VAWDAPIFAYNYLFPQLNDSVVSREAESLRKVMQEIDADIEKLTRARDEKREAAAK--------------------DYGPERAFFALNDQCIEKKIEKYTYKLCAFRDVKQDYTLLGKWEAWGSADNG-DKDYARMQFIKGQKCWNGPERSVQVRLACGQENEIVSVDEPSTCVYEMLLQTPLACTQDVLAQAQ 612
BLAST of mRNA_H-elongata_contig83907.16002.1 vs. uniprot
Match: A0A137NYP4_CONC2 (Glucosidase 2 subunit beta (Fragment) n=1 Tax=Conidiobolus coronatus (strain ATCC 28846 / CBS 209.66 / NRRL 28638) TaxID=796925 RepID=A0A137NYP4_CONC2) HSP 1 Score: 78.6 bits (192), Expect = 3.460e-13 Identity = 45/128 (35.16%), Postives = 65/128 (50.78%), Query Frame = 1
Query: 280 KREETEARRLLDLDLGKDSGFAALAEKCLDLQQGGYVYSLCPFKEAKQ------DKHSLGKWKGWAPRRNRRDHDYRAMLFDGGSRCHNKKQRSAEVLVECGPHDALVAAEELEIGVYRLAMETPLAC 645
KRE + L+ D+G D ++AL++KC +L G YVYS+C F EA Q D SLG + W DY A L+ G+ C N RS ++ + CG + + + E Y ++M TP AC
Sbjct: 331 KRELDDLNTKLNRDMGPDGEYSALSDKCFELDNGEYVYSVCMFGEANQKSNKNHDSVSLGHFSEWVGT------DYSAQLYSNGTPCWNGPSRSVKLNLICGTEEKVTSVTEPSKCEYHISMLTPAAC 452
BLAST of mRNA_H-elongata_contig83907.16002.1 vs. uniprot
Match: A0A0N4UFS2_DRAME (PRKCSH_1 domain-containing protein n=1 Tax=Dracunculus medinensis TaxID=318479 RepID=A0A0N4UFS2_DRAME) HSP 1 Score: 63.9 bits (154), Expect = 2.960e-9 Identity = 37/124 (29.84%), Postives = 53/124 (42.74%), Query Frame = 1
Query: 292 TEARRLLDLDLGKDSGFAALAEKCLDLQQGGYVYSLCPFKEAKQ------DKHSLGKWKGWAPRRNRRDHDYRAMLFDGGSRCHNKKQRSAEVLVECGPHDALVAAEELEIGVYRLAMETPLAC 645
+E L D D + L KCL++ +G Y+Y LC F +A Q + +LG W W+ +++ G C N RSA + VECG L+ E Y + TP AC
Sbjct: 15 SEVADFLKDDFDTDLAWMPLKNKCLEINEGHYIYKLCLFDKASQIDSGGGPEINLGTWSKWSSGTA----GVGMQIYERGQSCWNGPDRSAHITVECGEDTKLIEVSEPSKCEYHFVLHTPAAC 134
BLAST of mRNA_H-elongata_contig83907.16002.1 vs. uniprot
Match: A0A4T0FRZ6_9BASI (Glucosidase 2 subunit beta n=1 Tax=Wallemia hederae TaxID=1540922 RepID=A0A4T0FRZ6_9BASI) HSP 1 Score: 62.0 bits (149), Expect = 1.850e-7 Identity = 38/123 (30.89%), Postives = 58/123 (47.15%), Query Frame = 1
Query: 325 GKDSGFAALAEKCLDLQQGGYVYSLCPFK---EAKQDKHS----LGKWKGWAPRRNRRDHD-YRAMLFDGGSRCHNKKQRSAEVLVECGPHDALVAAEELEIGVYRLAMETPLACTEGNVREA 669
G+ + AL ++C+ Y Y LC F + +QD+ S LG++ W D Y + G RC N +RS EV + CG H+ALV EE E Y+ +P AC + + ++
Sbjct: 786 GRQGEWNALNKECVTQDVAEYTYELCFFDRVMQRQQDRKSGGTSLGRFASWNENAEAGSDDFYSTQSYTKGQRCWNGPERSTEVEIICGEHNALVEVEEQEKCAYKFLATSPAACHDSSTAQS 908 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig83907.16002.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 6
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig83907.16002.1 >prot_H-elongata_contig83907.16002.1 ID=prot_H-elongata_contig83907.16002.1|Name=mRNA_H-elongata_contig83907.16002.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=235bp MIRHRYPTLRWLVTSWDMFLSPEGSGRFLMVMWDAPVALWGLLFPELDVEback to top mRNA from alignment at H-elongata_contig83907:1011..2621- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig83907.16002.1 ID=mRNA_H-elongata_contig83907.16002.1|Name=mRNA_H-elongata_contig83907.16002.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1611bp|location=Sequence derived from alignment at H-elongata_contig83907:1011..2621- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig83907:1011..2621- >mRNA_H-elongata_contig83907.16002.1 ID=mRNA_H-elongata_contig83907.16002.1|Name=mRNA_H-elongata_contig83907.16002.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1410bp|location=Sequence derived from alignment at H-elongata_contig83907:1011..2621- (Himanthalia elongata Himel1 dioecious)back to top |