mRNA_H-elongata_contig8385.16000.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig8385.16000.1
Unique NamemRNA_H-elongata_contig8385.16000.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig8385.16000.1 vs. uniprot
Match: D7FXD3_ECTSI (DDE-1 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FXD3_ECTSI)

HSP 1 Score: 347 bits (890), Expect = 2.670e-118
Identity = 175/250 (70.00%), Postives = 202/250 (80.80%), Query Frame = 1
Query:    1 MAFGTVKKLRKALLESAGKIFAERNPCASDELPVNGEELSSEQLESVTAEVF*ELGNMDQMPVQHEMPMETTLEKRGAKDALISTGGKKKERFTLCLAVMADGSKVPLCIIFKGTPFNPPNKPGKGKRTQRRKGSIAAEVDLGNRTKFGHPAAGMSFGVQENSWCDARECTLWISESLRLRPNNGSIITQHPIILVLDDFKCHRDEAFIADLRKGCNTSVILIPGGLTPLLQPLDRILNKQMKRLLRGKY 750
            MA+ T+ KLR+AL+E A +I+A RNP A  E P+ GE+L+SEQLESVTAEVF ELGNMDQ PVQHEMP+ET+LEK GAKDA I+TGGK+KERFTLCLAV  D  KVPL  IFKGTP  PP++PGKGK TQ RK SIA E+   NR+K G+P  GMSFGVQE SWCD REC LWI  S  LRPNNGS++ Q P ILVLDDFKCH+D+ FIA+L++  NT VI IPGGLTPLLQPLDR+LNK+MKRLLRG Y
Sbjct:    1 MAWATLMKLREALVERADEIYARRNPPAPGESPIKGEDLTSEQLESVTAEVFVELGNMDQTPVQHEMPVETSLEKTGAKDARIATGGKEKERFTLCLAVTGDCKKVPLRTIFKGTPLIPPDRPGKGKATQPRKNSIAWEMLPENRSKNGYPVGGMSFGVQEKSWCDLRECKLWIKHSWTLRPNNGSLVKQRPCILVLDDFKCHKDDTFIAELKRQANTIVIFIPGGLTPLLQPLDRMLNKRMKRLLRGMY 250          
BLAST of mRNA_H-elongata_contig8385.16000.1 vs. uniprot
Match: A0A6H5JUK2_9PHAE (DDE-1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUK2_9PHAE)

HSP 1 Score: 341 bits (875), Expect = 1.140e-113
Identity = 177/250 (70.80%), Postives = 198/250 (79.20%), Query Frame = 1
Query:    1 MAFGTVKKLRKALLESAGKIFAERNPCASDELPVNGEELSSEQLESVTAEVF*ELGNMDQMPVQHEMPMETTLEKRGAKDALISTGGKKKERFTLCLAVMADGSKVPLCIIFKGTPFNPPNKPGKGKRTQRRKGSIAAEVDLGNRTKFGHPAAGMSFGVQENSWCDARECTLWISESLRLRPNNGSIITQHPIILVLDDFKCHRDEAFIADLRKGCNTSVILIPGGLTPLLQPLDRILNKQMKRLLRGKY 750
            MA+ TV KLR+AL+  AG+I+A R+P A DE P+ GE+L+ EQL SV AEVF ELGNMDQ PVQHEMP+ETTLEK GAKDA ISTGGK+KERFTL LAVMADG KV   IIFKGTPF PP   GKGK T  RK S+A E+   NR K  HPA GMSFGVQE SW D REC  WIS S +LRPNNGSI+ Q P ILVLDDFKCH+DE +IA L++  NT VI+IPGGLTPLLQPLDR+LNKQMKRLLRGKY
Sbjct:   63 MAWATVMKLREALVRRAGEIYARRHPPAPDESPIKGEDLTFEQLASVEAEVFKELGNMDQTPVQHEMPVETTLEKTGAKDARISTGGKEKERFTLVLAVMADGKKVSPRIIFKGTPFIPPAVSGKGKSTLPRKNSVAWEIHPANRAKHDHPANGMSFGVQEKSWSDQRECNGWISGSWKLRPNNGSIVQQRPCILVLDDFKCHKDEGYIAALKRDANTIVIVIPGGLTPLLQPLDRMLNKQMKRLLRGKY 312          
BLAST of mRNA_H-elongata_contig8385.16000.1 vs. uniprot
Match: A0A6H5K6L9_9PHAE (DDE-1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K6L9_9PHAE)

HSP 1 Score: 342 bits (876), Expect = 3.620e-113
Identity = 177/250 (70.80%), Postives = 198/250 (79.20%), Query Frame = 1
Query:    1 MAFGTVKKLRKALLESAGKIFAERNPCASDELPVNGEELSSEQLESVTAEVF*ELGNMDQMPVQHEMPMETTLEKRGAKDALISTGGKKKERFTLCLAVMADGSKVPLCIIFKGTPFNPPNKPGKGKRTQRRKGSIAAEVDLGNRTKFGHPAAGMSFGVQENSWCDARECTLWISESLRLRPNNGSIITQHPIILVLDDFKCHRDEAFIADLRKGCNTSVILIPGGLTPLLQPLDRILNKQMKRLLRGKY 750
            MA+ TV KLR+AL++ AG+I+A R+P A DE P+ GE+L+SEQL SV AEVF ELGNMDQ PVQHE+P+ETTLEK GAKDA ISTGGK+KERFTL LAVMADG KV   IIFKGTPF PP   GKGK T  RK S+A E+   NR K GHPA GMSFGVQE SW D REC  WIS S +LRPNNGSI+ Q P ILVLDDFKCH+DE FIA L++  NT VI IPG LTPLLQPLDR+LNKQMKRLLR KY
Sbjct:   63 MAWATVMKLREALVKRAGEIYARRHPPAPDESPIKGEDLTSEQLASVEAEVFEELGNMDQTPVQHEIPVETTLEKTGAKDARISTGGKEKERFTLVLAVMADGKKVSPRIIFKGTPFTPPTVSGKGKSTLPRKNSVAWEIHPANRAKHGHPANGMSFGVQEKSWSDQRECNGWISGSWKLRPNNGSIVQQRPCILVLDDFKCHKDEGFIAALKRDANTIVIFIPGRLTPLLQPLDRMLNKQMKRLLRRKY 312          
BLAST of mRNA_H-elongata_contig8385.16000.1 vs. uniprot
Match: A0A6H5K583_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K583_9PHAE)

HSP 1 Score: 348 bits (894), Expect = 2.660e-109
Identity = 176/248 (70.97%), Postives = 203/248 (81.85%), Query Frame = 1
Query:    1 MAFGTVKKLRKALLESAGKIFAERNPCASDELPVNGEELSSEQLESVTAEVF*ELGNMDQMPVQHEMPMETTLEKRGAKDALISTGGKKKERFTLCLAVMADGSKVPLCIIFKGTPFNPPNKPGKGKRTQRRKGSIAAEVDLGNRTKFGHPAAGMSFGVQENSWCDARECTLWISESLRLRPNNGSIITQHPIILVLDDFKCHRDEAFIADLRKGCNTSVILIPGGLTPLLQPLDRILNKQMKRLLRG 744
            +AF T+ KLR ALLE AG+I+A RNP AS E P+ G++L+  QLESV A+VF ELGNMDQ PVQ EMP+ETTLEKRG KDA ISTGGK+K+RFT CLAVMADG KVP  IIFKG PF PP+  G+ K TQ RKG IAAEV L NRTKFG+P +GM F VQE SWCDARECTLW+SES R RPN+GS+I Q   ILVLDDF+CHR E+F+ DLR+  NT+VILIPGGLTPLLQPLDR+LNK+MKRL+RG
Sbjct:  132 LAFATLMKLRTALLERAGEIYARRNPPASGESPIKGKDLTPAQLESVAAKVFEELGNMDQTPVQQEMPVETTLEKRGVKDARISTGGKEKDRFTPCLAVMADGGKVPQRIIFKGKPFIPPSTAGREKNTQTRKGYIAAEVLLANRTKFGYPVSGMFFVVQEKSWCDARECTLWLSESWRFRPNHGSVIKQRHSILVLDDFRCHRSESFVKDLRRRTNTTVILIPGGLTPLLQPLDRMLNKEMKRLMRG 379          
BLAST of mRNA_H-elongata_contig8385.16000.1 vs. uniprot
Match: A0A6H5KII4_9PHAE (DDE-1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KII4_9PHAE)

HSP 1 Score: 329 bits (844), Expect = 9.280e-109
Identity = 170/245 (69.39%), Postives = 192/245 (78.37%), Query Frame = 1
Query:   16 VKKLRKALLESAGKIFAERNPCASDELPVNGEELSSEQLESVTAEVF*ELGNMDQMPVQHEMPMETTLEKRGAKDALISTGGKKKERFTLCLAVMADGSKVPLCIIFKGTPFNPPNKPGKGKRTQRRKGSIAAEVDLGNRTKFGHPAAGMSFGVQENSWCDARECTLWISESLRLRPNNGSIITQHPIILVLDDFKCHRDEAFIADLRKGCNTSVILIPGGLTPLLQPLDRILNKQMKRLLRGKY 750
            V KLR+AL++ AG+I+A R+P A DE P+ GE+L+SEQL SV AEVF +LGNMDQ PVQHEMP+ETTLEK GAKDA +STGG++KERFTL LAV ADG KV L IIF GTPF PP   GKGK T  RK S+A E+   NR K GHPA GMSFGVQE SW D REC  W S S +LRPNNGSI+ Q P ILVLDDFKCH+DE FIA L++  NT VI IPGGLTPLLQPLDR+LNKQ KRLLR KY
Sbjct:    2 VMKLREALVKRAGEIYARRHPPAPDESPIKGEDLTSEQLASVEAEVFEDLGNMDQTPVQHEMPVETTLEKTGAKDARVSTGGEEKERFTLVLAVTADGKKVSLRIIFMGTPFIPPTVSGKGKSTLPRKNSVAWEMHPTNRAKHGHPANGMSFGVQEKSWSDQRECNGWTSGSWKLRPNNGSIVQQRPCILVLDDFKCHKDEGFIAALKRDANTIVIFIPGGLTPLLQPLDRMLNKQTKRLLRSKY 246          
BLAST of mRNA_H-elongata_contig8385.16000.1 vs. uniprot
Match: A0A6H5K8Y4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K8Y4_9PHAE)

HSP 1 Score: 346 bits (888), Expect = 3.140e-108
Identity = 178/250 (71.20%), Postives = 198/250 (79.20%), Query Frame = 1
Query:    1 MAFGTVKKLRKALLESAGKIFAERNPCASDELPVNGEELSSEQLESVTAEVF*ELGNMDQMPVQHEMPMETTLEKRGAKDALISTGGKKKERFTLCLAVMADGSKVPLCIIFKGTPFNPPNKPGKGKRTQRRKGSIAAEVDLGNRTKFGHPAAGMSFGVQENSWCDARECTLWISESLRLRPNNGSIITQHPIILVLDDFKCHRDEAFIADLRKGCNTSVILIPGGLTPLLQPLDRILNKQMKRLLRGKY 750
            MA+ T+ KLRKALLE AG+I+A+R P A  E P+ GE+LSS QLE VT E+F ELGNMDQ PVQHEMP+ETTLE  GAKDA I+TGGK+KERFTLCLAV ADG KVPL IIFKGTPF PP  PGKGK TQ RK SIA EV   NR+K G P  GMSFGVQE SWCD REC LWI +S +LRPNNGSI+ Q   ILVLDDFKCH+D+ FIA L++  NT VI IPGGL PL QPLDR+LNKQMKRLLRG Y
Sbjct:  217 MAWATLMKLRKALLERAGEIYAQRYPPAPGESPIRGEDLSSSQLELVTDELFEELGNMDQTPVQHEMPVETTLENTGAKDARIATGGKEKERFTLCLAVSADGKKVPLRIIFKGTPFVPPATPGKGKATQPRKNSIAWEVLPANRSKHGLPVGGMSFGVQEKSWCDLRECKLWIKDSWKLRPNNGSIVRQRRCILVLDDFKCHKDDGFIAALKREANTIVIFIPGGLIPLFQPLDRMLNKQMKRLLRGMY 466          
BLAST of mRNA_H-elongata_contig8385.16000.1 vs. uniprot
Match: A0A6H5KE45_9PHAE (DDE-1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KE45_9PHAE)

HSP 1 Score: 330 bits (846), Expect = 2.710e-107
Identity = 177/276 (64.13%), Postives = 201/276 (72.83%), Query Frame = 1
Query:    1 MAFGTVKKLRKALLESAGKIFAERNPCASDELPVNGEELSSEQLESVTAEVF*ELGNMDQMPVQHEMPMETTLEKRGAKDALISTG--------------------------GKKKERFTLCLAVMADGSKVPLCIIFKGTPFNPPNKPGKGKRTQRRKGSIAAEVDLGNRTKFGHPAAGMSFGVQENSWCDARECTLWISESLRLRPNNGSIITQHPIILVLDDFKCHRDEAFIADLRKGCNTSVILIPGGLTPLLQPLDRILNKQMKRLLRGKY 750
            MA+ T+ KLRKALLE AG+I+A+R P A  E P+ GE+LSS QLE VT E+F +LGNMDQ PVQ+EMP+ETTLEK GAKDA I+TG                          GK+KERFTLCLAV ADG+KVPL IIFKGTPF PP  PGKGK TQ RK SIA EV   NR+K G P  GMSFGVQE SWCD RE  LWI +S +LRPNNGS++ Q   ILVLDDFKCH+D+ FIA L++  NT VI IPGGLTPLLQPLDR+LNKQMKRLLRG Y
Sbjct:  150 MAWATLMKLRKALLERAGEIYAQRYPPAPGESPIRGEDLSSSQLELVTDELFKDLGNMDQTPVQYEMPVETTLEKTGAKDARIATGAGVCCIRTILKPLPYPPTSCILPPPPGKEKERFTLCLAVSADGTKVPLRIIFKGTPFVPPATPGKGKATQPRKNSIAWEVLPANRSKHGLPVGGMSFGVQEKSWCDLREYKLWIKDSWKLRPNNGSVVRQRRCILVLDDFKCHKDDGFIAALKREANTIVIFIPGGLTPLLQPLDRMLNKQMKRLLRGMY 425          
BLAST of mRNA_H-elongata_contig8385.16000.1 vs. uniprot
Match: A0A6H5JTG5_9PHAE (DDE-1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JTG5_9PHAE)

HSP 1 Score: 330 bits (846), Expect = 7.880e-107
Identity = 175/258 (67.83%), Postives = 194/258 (75.19%), Query Frame = 1
Query:    1 MAFGTVKKLRKALLESAGKIFAERNPCASDELPVNGEELSSEQLESVTAEVF*ELGNMDQMPVQHEMPMETTLEKRGAKDALISTGGKKKERFTLCLAVMADGSKVPLCIIFKGTPFNPPNKPGKGKRTQRRKGSIAAEVDLGNRTKFGHPAAGMSFGVQENSWCDARECTLWISESLRL--------RPNNGSIITQHPIILVLDDFKCHRDEAFIADLRKGCNTSVILIPGGLTPLLQPLDRILNKQMKRLLRGKY 750
            MA+ TV KLR+AL++ AG+I+A R+P A DE P+ GE+L+SEQ  SV AEVF ELGNMDQ PVQHEMP+ETTLE  G KDA ISTGGK+KERFTL LAVMADG  V  CIIFKGTPF PP   GKGK T  RK S+A EV   NR K GHPA GMSFGVQE SW   +EC  WI  S +L        RPNNGSI+ Q P ILVLDDFKCH+DE FIA L +  NT VI IPGGLTPLLQPLDR+LNKQMKRLLRGKY
Sbjct:  217 MAWATVTKLREALVKRAGEIYARRHPPAPDESPIKGEDLTSEQPASVEAEVFEELGNMDQTPVQHEMPVETTLEDTGGKDARISTGGKEKERFTLVLAVMADGKMVSPCIIFKGTPFIPPTVSGKGKSTLPRKNSVAWEVHPANRAKHGHPANGMSFGVQEKSWSGQQECNGWIPGSWKLCPNNGSMXRPNNGSIVQQRPCILVLDDFKCHKDEGFIAALNRDANTIVIFIPGGLTPLLQPLDRMLNKQMKRLLRGKY 474          
BLAST of mRNA_H-elongata_contig8385.16000.1 vs. uniprot
Match: A0A6H5JHT8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHT8_9PHAE)

HSP 1 Score: 332 bits (850), Expect = 1.140e-106
Identity = 174/251 (69.32%), Postives = 197/251 (78.49%), Query Frame = 1
Query:    1 MAFGTVKKLRKALLESAGKIFAERNPCASDELPVNGEELSSEQLESVTAEVF*ELGNMDQMPVQHEMPMETTLEKRGAKDALISTGG-KKKERFTLCLAVMADGSKVPLCIIFKGTPFNPPNKPGKGKRTQRRKGSIAAEVDLGNRTKFGHPAAGMSFGVQENSWCDARECTLWISESLRLRPNNGSIITQHPIILVLDDFKCHRDEAFIADLRKGCNTSVILIPGGLTPLLQPLDRILNKQMKRLLRGKY 750
            MA+ TV KL +AL++ AG+I+A R+P A DE P+ GE+L+SEQL SV AEVF E+GNMDQMPVQHEMP+ETTL+K GAKDA ISTGG  +KERFTL LAV ADG KV   IIF+GTPF PP   GKGK T+ RK  +A E+   NR K GHPA GMSFGVQE SW D REC  WIS S +LRPNNGSI+ Q P ILVLDDFKCH DE FIA L++  NT VI IPGGLTPLLQPLDR+LNKQMKRLLRGKY
Sbjct:  257 MAWATVMKLCEALVKRAGEIYARRHPPAPDESPIKGEDLNSEQLASVEAEVFEEVGNMDQMPVQHEMPVETTLDKTGAKDARISTGGGNEKERFTLVLAVTADGKKVSPRIIFEGTPFIPPTVSGKGKSTRPRKNPVAWEMHPANRAKHGHPANGMSFGVQEKSWSDQRECNGWISGSWKLRPNNGSIVQQRPRILVLDDFKCHNDEGFIAALKRDANTIVIFIPGGLTPLLQPLDRMLNKQMKRLLRGKY 507          
BLAST of mRNA_H-elongata_contig8385.16000.1 vs. uniprot
Match: A0A6H5JQM5_9PHAE (DDE-1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQM5_9PHAE)

HSP 1 Score: 315 bits (807), Expect = 3.630e-101
Identity = 168/250 (67.20%), Postives = 192/250 (76.80%), Query Frame = 1
Query:    1 MAFGTVKKLRKALLESAGKIFAERNPCASDELPVNGEELSSEQLESVTAEVF*ELGNMDQMPVQHEMPMETTLEKRGAKDALISTGGKKKERFTLCLAVMADGSKVPLCIIFKGTPFNPPNKPGKGKRTQRRKGSIAAEVDLGNRTKFGHPAAGMSFGVQENSWCDARECTLWISESLRLRPNNGSIITQHPIILVLDDFKCHRDEAFIADLRKGCNTSVILIPGGLTPLLQPLDRILNKQMKRLLRGKY 750
            +AF T+ KLR ALLE AG+I+A RNP AS E P+ G++LS  QLESV  EVF ELGNMDQ PVQ EMP+ETTLEK GAKDA ISTGGK+KERFTLCLAVMADG KVPL IIFKG PF PP+   +GK TQ RKGSIAAEV   N+T FG+P +GMSFGVQE SW DA ECTLW+SES   RPN+GS+I Q   ILVLDDF+               NT+VILIPGGLTPLLQPLDR+L+K+MKRL+R +Y
Sbjct:  236 LAFATLMKLRTALLERAGEIYARRNPPASGESPIKGKDLSPAQLESVATEVFEELGNMDQTPVQQEMPVETTLEKGGAKDARISTGGKEKERFTLCLAVMADGGKVPLRIIFKGKPFIPPSTARRGKNTQPRKGSIAAEVLPANQTNFGYPVSGMSFGVQERSWYDACECTLWLSESWGFRPNHGSVIKQRHSILVLDDFRT--------------NTTVILIPGGLTPLLQPLDRMLDKEMKRLMRRRY 471          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig8385.16000.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FXD3_ECTSI2.670e-11870.00DDE-1 domain-containing protein n=1 Tax=Ectocarpus... [more]
A0A6H5JUK2_9PHAE1.140e-11370.80DDE-1 domain-containing protein n=1 Tax=Ectocarpus... [more]
A0A6H5K6L9_9PHAE3.620e-11370.80DDE-1 domain-containing protein n=1 Tax=Ectocarpus... [more]
A0A6H5K583_9PHAE2.660e-10970.97Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5KII4_9PHAE9.280e-10969.39DDE-1 domain-containing protein n=1 Tax=Ectocarpus... [more]
A0A6H5K8Y4_9PHAE3.140e-10871.20Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KE45_9PHAE2.710e-10764.13DDE-1 domain-containing protein n=1 Tax=Ectocarpus... [more]
A0A6H5JTG5_9PHAE7.880e-10767.83DDE-1 domain-containing protein n=1 Tax=Ectocarpus... [more]
A0A6H5JHT8_9PHAE1.140e-10669.32Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JQM5_9PHAE3.630e-10167.20DDE-1 domain-containing protein n=1 Tax=Ectocarpus... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig8385contigH-elongata_contig8385:7256..8263 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score288.1
Seed ortholog evalue3e-75
Seed eggNOG ortholog2880.D7FXD3
Preferred namePOGK
KEGG koko:K09228
EggNOG free text desc.DNA binding
EggNOG OGsKOG3105@1,KOG3105@2759
COG Functional cat.CH
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03000
Hectar predicted targeting categoryother localisation
Exons2
Model size750
Cds size579
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig8385.16000.1prot_H-elongata_contig8385.16000.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig8385 7427..8263 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931243.6796038-UTR-H-elongata_contig8385:7255..74261622931243.6796038-UTR-H-elongata_contig8385:7255..7426Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig8385 7256..7426 +
1691679756.9013968-UTR-H-elongata_contig8385:7255..74261691679756.9013968-UTR-H-elongata_contig8385:7255..7426Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig8385 7256..7426 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931243.6996565-CDS-H-elongata_contig8385:7426..75141622931243.6996565-CDS-H-elongata_contig8385:7426..7514Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig8385 7427..7514 +
1691679756.9109604-CDS-H-elongata_contig8385:7426..75141691679756.9109604-CDS-H-elongata_contig8385:7426..7514Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig8385 7427..7514 +
1622931243.7177045-CDS-H-elongata_contig8385:7772..82631622931243.7177045-CDS-H-elongata_contig8385:7772..8263Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig8385 7773..8263 +
1691679756.9219687-CDS-H-elongata_contig8385:7772..82631691679756.9219687-CDS-H-elongata_contig8385:7772..8263Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig8385 7773..8263 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig8385.16000.1

>prot_H-elongata_contig8385.16000.1 ID=prot_H-elongata_contig8385.16000.1|Name=mRNA_H-elongata_contig8385.16000.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=193bp
MDQMPVQHEMPMETTLEKRGAKDALISTGGKKKERFTLCLAVMADGSKVP
LCIIFKGTPFNPPNKPGKGKRTQRRKGSIAAEVDLGNRTKFGHPAAGMSF
GVQENSWCDARECTLWISESLRLRPNNGSIITQHPIILVLDDFKCHRDEA
FIADLRKGCNTSVILIPGGLTPLLQPLDRILNKQMKRLLRGKY
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mRNA from alignment at H-elongata_contig8385:7256..8263+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig8385.16000.1 ID=mRNA_H-elongata_contig8385.16000.1|Name=mRNA_H-elongata_contig8385.16000.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1008bp|location=Sequence derived from alignment at H-elongata_contig8385:7256..8263+ (Himanthalia elongata Himel1 dioecious)
ATGGCGTTTGGAACAGTGAAGAAGCTTCGGAAGGCTCTCCTGGAGAGTGC TGGCAAAATATTTGCTGAGCGCAACCCGTGTGCTTCTGATGAGCTCCCCG TGAACGGGGAGGAGCTGAGTTCCGAGCAGCTGGAGTCGGTGACGGCGGAG GTTTTCTAAGAACTCGGCAATATGGACCAGATGCCCGTTCAGCACGAGAT GCCGATGGAGACAACTCTGGAGAAGCGTGGTGCGAAGGATGCTCTCATCA GCACAGGAGGTGAGAGTATTGTGGCTGCGTGCTTGTCGATAGTATGTATT TTGCATCGTTTTAATGTTTTTATTGTACAGTTGTTGCTGCTGCTGTTGCT GCTGCTGTTGCTGCTGCTGTTGCTGCTGCTACAACGCGATTTTTTTTCTT TAGATGATAGGTATTTTTGGCACCGTAAAATCCCCCCGCATCGTGAATAC GAAGTATAAATCAAAACATACAACTGTAACCCCCTTCCGCCCTCTCTTTG GGTCGACTCCCCCGTAGGCAAGAAGAAGGAGCGCTTCACTCTCTGTCTTG CTGTCATGGCGGACGGCAGCAAGGTTCCGCTATGCATCATCTTCAAAGGC ACGCCGTTCAACCCGCCGAACAAGCCGGGAAAGGGCAAGAGAACTCAGCG GCGAAAGGGGTCCATCGCGGCAGAGGTTGATCTCGGGAATCGTACCAAGT TCGGGCACCCCGCGGCGGGCATGTCGTTTGGTGTGCAGGAGAATAGCTGG TGTGACGCGCGGGAGTGCACCCTTTGGATCTCAGAGAGTTTGAGGCTTCG CCCCAACAACGGAAGCATCATCACGCAGCACCCGATCATTCTGGTGTTGG ACGACTTCAAGTGCCACCGTGACGAGGCATTCATCGCTGACCTCCGGAAG GGGTGCAACACCAGCGTCATCCTGATCCCGGGCGGGTTGACTCCTCTCCT CCAGCCGCTGGACCGCATTCTCAACAAGCAGATGAAGCGGCTACTGCGGG GGAAATAC
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Coding sequence (CDS) from alignment at H-elongata_contig8385:7256..8263+

>mRNA_H-elongata_contig8385.16000.1 ID=mRNA_H-elongata_contig8385.16000.1|Name=mRNA_H-elongata_contig8385.16000.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1158bp|location=Sequence derived from alignment at H-elongata_contig8385:7256..8263+ (Himanthalia elongata Himel1 dioecious)
ATGGACCAGATGCCCGTTCAGCACGAGATGCCGATGGAGACAACTCTGGA
GAAGCGTGGTGCGAAGGATGCTCTCATCAGCACAGGAGATGGACCAGATG
CCCGTTCAGCACGAGATGCCGATGGAGACAACTCTGGAGAAGCGTGGTGC
GAAGGATGCTCTCATCAGCACAGGAGGCAAGAAGAAGGAGCGCTTCACTC
TCTGTCTTGCTGTCATGGCGGACGGCAGCAAGGTTCCGCTATGCATCATC
TTCAAAGGCACGCCGTTCAACCCGCCGAACAAGCCGGGAAAGGGCAAGAG
AACTCAGCGGCGAAAGGGGTCCATCGCGGCAGAGGTTGATCTCGGGAATC
GTACCAAGTTCGGGCACCCCGCGGCGGGCATGTCGTTTGGTGTGCAGGAG
AATAGCTGGTGTGACGCGCGGGAGTGCACCCTTTGGATCTCAGAGAGTTT
GAGGCTTCGCCCCAACAACGGAAGCATCATCACGCAGCACCCGATCATTC
TGGTGTTGGACGACTTCAAGTGCCACCGTGACGAGGCATTCATCGCTGAC
CTCCGGAAGGGGTGCAACACCAGCGTCATCCTGATCCCGGGCGGGTTGAC
TCCTCTCCTCCAGCCGCTGGACCGCATTCTCAACAAGCAGATGAAGCGGC
TACTGCGGGGGAAATACGCAAGAAGAAGGAGCGCTTCACTCTCTGTCTTG
CTGTCATGGCGGACGGCAGCAAGGTTCCGCTATGCATCATCTTCAAAGGC
ACGCCGTTCAACCCGCCGAACAAGCCGGGAAAGGGCAAGAGAACTCAGCG
GCGAAAGGGGTCCATCGCGGCAGAGGTTGATCTCGGGAATCGTACCAAGT
TCGGGCACCCCGCGGCGGGCATGTCGTTTGGTGTGCAGGAGAATAGCTGG
TGTGACGCGCGGGAGTGCACCCTTTGGATCTCAGAGAGTTTGAGGCTTCG
CCCCAACAACGGAAGCATCATCACGCAGCACCCGATCATTCTGGTGTTGG
ACGACTTCAAGTGCCACCGTGACGAGGCATTCATCGCTGACCTCCGGAAG
GGGTGCAACACCAGCGTCATCCTGATCCCGGGCGGGTTGACTCCTCTCCT
CCAGCCGCTGGACCGCATTCTCAACAAGCAGATGAAGCGGCTACTGCGGG
GGAAATAC
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