mRNA_H-elongata_contig8385.16000.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig8385.16000.1 vs. uniprot
Match: D7FXD3_ECTSI (DDE-1 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FXD3_ECTSI) HSP 1 Score: 347 bits (890), Expect = 2.670e-118 Identity = 175/250 (70.00%), Postives = 202/250 (80.80%), Query Frame = 1
Query: 1 MAFGTVKKLRKALLESAGKIFAERNPCASDELPVNGEELSSEQLESVTAEVF*ELGNMDQMPVQHEMPMETTLEKRGAKDALISTGGKKKERFTLCLAVMADGSKVPLCIIFKGTPFNPPNKPGKGKRTQRRKGSIAAEVDLGNRTKFGHPAAGMSFGVQENSWCDARECTLWISESLRLRPNNGSIITQHPIILVLDDFKCHRDEAFIADLRKGCNTSVILIPGGLTPLLQPLDRILNKQMKRLLRGKY 750
MA+ T+ KLR+AL+E A +I+A RNP A E P+ GE+L+SEQLESVTAEVF ELGNMDQ PVQHEMP+ET+LEK GAKDA I+TGGK+KERFTLCLAV D KVPL IFKGTP PP++PGKGK TQ RK SIA E+ NR+K G+P GMSFGVQE SWCD REC LWI S LRPNNGS++ Q P ILVLDDFKCH+D+ FIA+L++ NT VI IPGGLTPLLQPLDR+LNK+MKRLLRG Y
Sbjct: 1 MAWATLMKLREALVERADEIYARRNPPAPGESPIKGEDLTSEQLESVTAEVFVELGNMDQTPVQHEMPVETSLEKTGAKDARIATGGKEKERFTLCLAVTGDCKKVPLRTIFKGTPLIPPDRPGKGKATQPRKNSIAWEMLPENRSKNGYPVGGMSFGVQEKSWCDLRECKLWIKHSWTLRPNNGSLVKQRPCILVLDDFKCHKDDTFIAELKRQANTIVIFIPGGLTPLLQPLDRMLNKRMKRLLRGMY 250
BLAST of mRNA_H-elongata_contig8385.16000.1 vs. uniprot
Match: A0A6H5JUK2_9PHAE (DDE-1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUK2_9PHAE) HSP 1 Score: 341 bits (875), Expect = 1.140e-113 Identity = 177/250 (70.80%), Postives = 198/250 (79.20%), Query Frame = 1
Query: 1 MAFGTVKKLRKALLESAGKIFAERNPCASDELPVNGEELSSEQLESVTAEVF*ELGNMDQMPVQHEMPMETTLEKRGAKDALISTGGKKKERFTLCLAVMADGSKVPLCIIFKGTPFNPPNKPGKGKRTQRRKGSIAAEVDLGNRTKFGHPAAGMSFGVQENSWCDARECTLWISESLRLRPNNGSIITQHPIILVLDDFKCHRDEAFIADLRKGCNTSVILIPGGLTPLLQPLDRILNKQMKRLLRGKY 750
MA+ TV KLR+AL+ AG+I+A R+P A DE P+ GE+L+ EQL SV AEVF ELGNMDQ PVQHEMP+ETTLEK GAKDA ISTGGK+KERFTL LAVMADG KV IIFKGTPF PP GKGK T RK S+A E+ NR K HPA GMSFGVQE SW D REC WIS S +LRPNNGSI+ Q P ILVLDDFKCH+DE +IA L++ NT VI+IPGGLTPLLQPLDR+LNKQMKRLLRGKY
Sbjct: 63 MAWATVMKLREALVRRAGEIYARRHPPAPDESPIKGEDLTFEQLASVEAEVFKELGNMDQTPVQHEMPVETTLEKTGAKDARISTGGKEKERFTLVLAVMADGKKVSPRIIFKGTPFIPPAVSGKGKSTLPRKNSVAWEIHPANRAKHDHPANGMSFGVQEKSWSDQRECNGWISGSWKLRPNNGSIVQQRPCILVLDDFKCHKDEGYIAALKRDANTIVIVIPGGLTPLLQPLDRMLNKQMKRLLRGKY 312
BLAST of mRNA_H-elongata_contig8385.16000.1 vs. uniprot
Match: A0A6H5K6L9_9PHAE (DDE-1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K6L9_9PHAE) HSP 1 Score: 342 bits (876), Expect = 3.620e-113 Identity = 177/250 (70.80%), Postives = 198/250 (79.20%), Query Frame = 1
Query: 1 MAFGTVKKLRKALLESAGKIFAERNPCASDELPVNGEELSSEQLESVTAEVF*ELGNMDQMPVQHEMPMETTLEKRGAKDALISTGGKKKERFTLCLAVMADGSKVPLCIIFKGTPFNPPNKPGKGKRTQRRKGSIAAEVDLGNRTKFGHPAAGMSFGVQENSWCDARECTLWISESLRLRPNNGSIITQHPIILVLDDFKCHRDEAFIADLRKGCNTSVILIPGGLTPLLQPLDRILNKQMKRLLRGKY 750
MA+ TV KLR+AL++ AG+I+A R+P A DE P+ GE+L+SEQL SV AEVF ELGNMDQ PVQHE+P+ETTLEK GAKDA ISTGGK+KERFTL LAVMADG KV IIFKGTPF PP GKGK T RK S+A E+ NR K GHPA GMSFGVQE SW D REC WIS S +LRPNNGSI+ Q P ILVLDDFKCH+DE FIA L++ NT VI IPG LTPLLQPLDR+LNKQMKRLLR KY
Sbjct: 63 MAWATVMKLREALVKRAGEIYARRHPPAPDESPIKGEDLTSEQLASVEAEVFEELGNMDQTPVQHEIPVETTLEKTGAKDARISTGGKEKERFTLVLAVMADGKKVSPRIIFKGTPFTPPTVSGKGKSTLPRKNSVAWEIHPANRAKHGHPANGMSFGVQEKSWSDQRECNGWISGSWKLRPNNGSIVQQRPCILVLDDFKCHKDEGFIAALKRDANTIVIFIPGRLTPLLQPLDRMLNKQMKRLLRRKY 312
BLAST of mRNA_H-elongata_contig8385.16000.1 vs. uniprot
Match: A0A6H5K583_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K583_9PHAE) HSP 1 Score: 348 bits (894), Expect = 2.660e-109 Identity = 176/248 (70.97%), Postives = 203/248 (81.85%), Query Frame = 1
Query: 1 MAFGTVKKLRKALLESAGKIFAERNPCASDELPVNGEELSSEQLESVTAEVF*ELGNMDQMPVQHEMPMETTLEKRGAKDALISTGGKKKERFTLCLAVMADGSKVPLCIIFKGTPFNPPNKPGKGKRTQRRKGSIAAEVDLGNRTKFGHPAAGMSFGVQENSWCDARECTLWISESLRLRPNNGSIITQHPIILVLDDFKCHRDEAFIADLRKGCNTSVILIPGGLTPLLQPLDRILNKQMKRLLRG 744
+AF T+ KLR ALLE AG+I+A RNP AS E P+ G++L+ QLESV A+VF ELGNMDQ PVQ EMP+ETTLEKRG KDA ISTGGK+K+RFT CLAVMADG KVP IIFKG PF PP+ G+ K TQ RKG IAAEV L NRTKFG+P +GM F VQE SWCDARECTLW+SES R RPN+GS+I Q ILVLDDF+CHR E+F+ DLR+ NT+VILIPGGLTPLLQPLDR+LNK+MKRL+RG
Sbjct: 132 LAFATLMKLRTALLERAGEIYARRNPPASGESPIKGKDLTPAQLESVAAKVFEELGNMDQTPVQQEMPVETTLEKRGVKDARISTGGKEKDRFTPCLAVMADGGKVPQRIIFKGKPFIPPSTAGREKNTQTRKGYIAAEVLLANRTKFGYPVSGMFFVVQEKSWCDARECTLWLSESWRFRPNHGSVIKQRHSILVLDDFRCHRSESFVKDLRRRTNTTVILIPGGLTPLLQPLDRMLNKEMKRLMRG 379
BLAST of mRNA_H-elongata_contig8385.16000.1 vs. uniprot
Match: A0A6H5KII4_9PHAE (DDE-1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KII4_9PHAE) HSP 1 Score: 329 bits (844), Expect = 9.280e-109 Identity = 170/245 (69.39%), Postives = 192/245 (78.37%), Query Frame = 1
Query: 16 VKKLRKALLESAGKIFAERNPCASDELPVNGEELSSEQLESVTAEVF*ELGNMDQMPVQHEMPMETTLEKRGAKDALISTGGKKKERFTLCLAVMADGSKVPLCIIFKGTPFNPPNKPGKGKRTQRRKGSIAAEVDLGNRTKFGHPAAGMSFGVQENSWCDARECTLWISESLRLRPNNGSIITQHPIILVLDDFKCHRDEAFIADLRKGCNTSVILIPGGLTPLLQPLDRILNKQMKRLLRGKY 750
V KLR+AL++ AG+I+A R+P A DE P+ GE+L+SEQL SV AEVF +LGNMDQ PVQHEMP+ETTLEK GAKDA +STGG++KERFTL LAV ADG KV L IIF GTPF PP GKGK T RK S+A E+ NR K GHPA GMSFGVQE SW D REC W S S +LRPNNGSI+ Q P ILVLDDFKCH+DE FIA L++ NT VI IPGGLTPLLQPLDR+LNKQ KRLLR KY
Sbjct: 2 VMKLREALVKRAGEIYARRHPPAPDESPIKGEDLTSEQLASVEAEVFEDLGNMDQTPVQHEMPVETTLEKTGAKDARVSTGGEEKERFTLVLAVTADGKKVSLRIIFMGTPFIPPTVSGKGKSTLPRKNSVAWEMHPTNRAKHGHPANGMSFGVQEKSWSDQRECNGWTSGSWKLRPNNGSIVQQRPCILVLDDFKCHKDEGFIAALKRDANTIVIFIPGGLTPLLQPLDRMLNKQTKRLLRSKY 246
BLAST of mRNA_H-elongata_contig8385.16000.1 vs. uniprot
Match: A0A6H5K8Y4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K8Y4_9PHAE) HSP 1 Score: 346 bits (888), Expect = 3.140e-108 Identity = 178/250 (71.20%), Postives = 198/250 (79.20%), Query Frame = 1
Query: 1 MAFGTVKKLRKALLESAGKIFAERNPCASDELPVNGEELSSEQLESVTAEVF*ELGNMDQMPVQHEMPMETTLEKRGAKDALISTGGKKKERFTLCLAVMADGSKVPLCIIFKGTPFNPPNKPGKGKRTQRRKGSIAAEVDLGNRTKFGHPAAGMSFGVQENSWCDARECTLWISESLRLRPNNGSIITQHPIILVLDDFKCHRDEAFIADLRKGCNTSVILIPGGLTPLLQPLDRILNKQMKRLLRGKY 750
MA+ T+ KLRKALLE AG+I+A+R P A E P+ GE+LSS QLE VT E+F ELGNMDQ PVQHEMP+ETTLE GAKDA I+TGGK+KERFTLCLAV ADG KVPL IIFKGTPF PP PGKGK TQ RK SIA EV NR+K G P GMSFGVQE SWCD REC LWI +S +LRPNNGSI+ Q ILVLDDFKCH+D+ FIA L++ NT VI IPGGL PL QPLDR+LNKQMKRLLRG Y
Sbjct: 217 MAWATLMKLRKALLERAGEIYAQRYPPAPGESPIRGEDLSSSQLELVTDELFEELGNMDQTPVQHEMPVETTLENTGAKDARIATGGKEKERFTLCLAVSADGKKVPLRIIFKGTPFVPPATPGKGKATQPRKNSIAWEVLPANRSKHGLPVGGMSFGVQEKSWCDLRECKLWIKDSWKLRPNNGSIVRQRRCILVLDDFKCHKDDGFIAALKREANTIVIFIPGGLIPLFQPLDRMLNKQMKRLLRGMY 466
BLAST of mRNA_H-elongata_contig8385.16000.1 vs. uniprot
Match: A0A6H5KE45_9PHAE (DDE-1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KE45_9PHAE) HSP 1 Score: 330 bits (846), Expect = 2.710e-107 Identity = 177/276 (64.13%), Postives = 201/276 (72.83%), Query Frame = 1
Query: 1 MAFGTVKKLRKALLESAGKIFAERNPCASDELPVNGEELSSEQLESVTAEVF*ELGNMDQMPVQHEMPMETTLEKRGAKDALISTG--------------------------GKKKERFTLCLAVMADGSKVPLCIIFKGTPFNPPNKPGKGKRTQRRKGSIAAEVDLGNRTKFGHPAAGMSFGVQENSWCDARECTLWISESLRLRPNNGSIITQHPIILVLDDFKCHRDEAFIADLRKGCNTSVILIPGGLTPLLQPLDRILNKQMKRLLRGKY 750
MA+ T+ KLRKALLE AG+I+A+R P A E P+ GE+LSS QLE VT E+F +LGNMDQ PVQ+EMP+ETTLEK GAKDA I+TG GK+KERFTLCLAV ADG+KVPL IIFKGTPF PP PGKGK TQ RK SIA EV NR+K G P GMSFGVQE SWCD RE LWI +S +LRPNNGS++ Q ILVLDDFKCH+D+ FIA L++ NT VI IPGGLTPLLQPLDR+LNKQMKRLLRG Y
Sbjct: 150 MAWATLMKLRKALLERAGEIYAQRYPPAPGESPIRGEDLSSSQLELVTDELFKDLGNMDQTPVQYEMPVETTLEKTGAKDARIATGAGVCCIRTILKPLPYPPTSCILPPPPGKEKERFTLCLAVSADGTKVPLRIIFKGTPFVPPATPGKGKATQPRKNSIAWEVLPANRSKHGLPVGGMSFGVQEKSWCDLREYKLWIKDSWKLRPNNGSVVRQRRCILVLDDFKCHKDDGFIAALKREANTIVIFIPGGLTPLLQPLDRMLNKQMKRLLRGMY 425
BLAST of mRNA_H-elongata_contig8385.16000.1 vs. uniprot
Match: A0A6H5JTG5_9PHAE (DDE-1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JTG5_9PHAE) HSP 1 Score: 330 bits (846), Expect = 7.880e-107 Identity = 175/258 (67.83%), Postives = 194/258 (75.19%), Query Frame = 1
Query: 1 MAFGTVKKLRKALLESAGKIFAERNPCASDELPVNGEELSSEQLESVTAEVF*ELGNMDQMPVQHEMPMETTLEKRGAKDALISTGGKKKERFTLCLAVMADGSKVPLCIIFKGTPFNPPNKPGKGKRTQRRKGSIAAEVDLGNRTKFGHPAAGMSFGVQENSWCDARECTLWISESLRL--------RPNNGSIITQHPIILVLDDFKCHRDEAFIADLRKGCNTSVILIPGGLTPLLQPLDRILNKQMKRLLRGKY 750
MA+ TV KLR+AL++ AG+I+A R+P A DE P+ GE+L+SEQ SV AEVF ELGNMDQ PVQHEMP+ETTLE G KDA ISTGGK+KERFTL LAVMADG V CIIFKGTPF PP GKGK T RK S+A EV NR K GHPA GMSFGVQE SW +EC WI S +L RPNNGSI+ Q P ILVLDDFKCH+DE FIA L + NT VI IPGGLTPLLQPLDR+LNKQMKRLLRGKY
Sbjct: 217 MAWATVTKLREALVKRAGEIYARRHPPAPDESPIKGEDLTSEQPASVEAEVFEELGNMDQTPVQHEMPVETTLEDTGGKDARISTGGKEKERFTLVLAVMADGKMVSPCIIFKGTPFIPPTVSGKGKSTLPRKNSVAWEVHPANRAKHGHPANGMSFGVQEKSWSGQQECNGWIPGSWKLCPNNGSMXRPNNGSIVQQRPCILVLDDFKCHKDEGFIAALNRDANTIVIFIPGGLTPLLQPLDRMLNKQMKRLLRGKY 474
BLAST of mRNA_H-elongata_contig8385.16000.1 vs. uniprot
Match: A0A6H5JHT8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHT8_9PHAE) HSP 1 Score: 332 bits (850), Expect = 1.140e-106 Identity = 174/251 (69.32%), Postives = 197/251 (78.49%), Query Frame = 1
Query: 1 MAFGTVKKLRKALLESAGKIFAERNPCASDELPVNGEELSSEQLESVTAEVF*ELGNMDQMPVQHEMPMETTLEKRGAKDALISTGG-KKKERFTLCLAVMADGSKVPLCIIFKGTPFNPPNKPGKGKRTQRRKGSIAAEVDLGNRTKFGHPAAGMSFGVQENSWCDARECTLWISESLRLRPNNGSIITQHPIILVLDDFKCHRDEAFIADLRKGCNTSVILIPGGLTPLLQPLDRILNKQMKRLLRGKY 750
MA+ TV KL +AL++ AG+I+A R+P A DE P+ GE+L+SEQL SV AEVF E+GNMDQMPVQHEMP+ETTL+K GAKDA ISTGG +KERFTL LAV ADG KV IIF+GTPF PP GKGK T+ RK +A E+ NR K GHPA GMSFGVQE SW D REC WIS S +LRPNNGSI+ Q P ILVLDDFKCH DE FIA L++ NT VI IPGGLTPLLQPLDR+LNKQMKRLLRGKY
Sbjct: 257 MAWATVMKLCEALVKRAGEIYARRHPPAPDESPIKGEDLNSEQLASVEAEVFEEVGNMDQMPVQHEMPVETTLDKTGAKDARISTGGGNEKERFTLVLAVTADGKKVSPRIIFEGTPFIPPTVSGKGKSTRPRKNPVAWEMHPANRAKHGHPANGMSFGVQEKSWSDQRECNGWISGSWKLRPNNGSIVQQRPRILVLDDFKCHNDEGFIAALKRDANTIVIFIPGGLTPLLQPLDRMLNKQMKRLLRGKY 507
BLAST of mRNA_H-elongata_contig8385.16000.1 vs. uniprot
Match: A0A6H5JQM5_9PHAE (DDE-1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQM5_9PHAE) HSP 1 Score: 315 bits (807), Expect = 3.630e-101 Identity = 168/250 (67.20%), Postives = 192/250 (76.80%), Query Frame = 1
Query: 1 MAFGTVKKLRKALLESAGKIFAERNPCASDELPVNGEELSSEQLESVTAEVF*ELGNMDQMPVQHEMPMETTLEKRGAKDALISTGGKKKERFTLCLAVMADGSKVPLCIIFKGTPFNPPNKPGKGKRTQRRKGSIAAEVDLGNRTKFGHPAAGMSFGVQENSWCDARECTLWISESLRLRPNNGSIITQHPIILVLDDFKCHRDEAFIADLRKGCNTSVILIPGGLTPLLQPLDRILNKQMKRLLRGKY 750
+AF T+ KLR ALLE AG+I+A RNP AS E P+ G++LS QLESV EVF ELGNMDQ PVQ EMP+ETTLEK GAKDA ISTGGK+KERFTLCLAVMADG KVPL IIFKG PF PP+ +GK TQ RKGSIAAEV N+T FG+P +GMSFGVQE SW DA ECTLW+SES RPN+GS+I Q ILVLDDF+ NT+VILIPGGLTPLLQPLDR+L+K+MKRL+R +Y
Sbjct: 236 LAFATLMKLRTALLERAGEIYARRNPPASGESPIKGKDLSPAQLESVATEVFEELGNMDQTPVQQEMPVETTLEKGGAKDARISTGGKEKERFTLCLAVMADGGKVPLRIIFKGKPFIPPSTARRGKNTQPRKGSIAAEVLPANQTNFGYPVSGMSFGVQERSWYDACECTLWLSESWGFRPNHGSVIKQRHSILVLDDFRT--------------NTTVILIPGGLTPLLQPLDRMLDKEMKRLMRRRY 471 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig8385.16000.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig8385.16000.1 >prot_H-elongata_contig8385.16000.1 ID=prot_H-elongata_contig8385.16000.1|Name=mRNA_H-elongata_contig8385.16000.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=193bp MDQMPVQHEMPMETTLEKRGAKDALISTGGKKKERFTLCLAVMADGSKVPback to top mRNA from alignment at H-elongata_contig8385:7256..8263+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig8385.16000.1 ID=mRNA_H-elongata_contig8385.16000.1|Name=mRNA_H-elongata_contig8385.16000.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1008bp|location=Sequence derived from alignment at H-elongata_contig8385:7256..8263+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig8385:7256..8263+ >mRNA_H-elongata_contig8385.16000.1 ID=mRNA_H-elongata_contig8385.16000.1|Name=mRNA_H-elongata_contig8385.16000.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1158bp|location=Sequence derived from alignment at H-elongata_contig8385:7256..8263+ (Himanthalia elongata Himel1 dioecious)back to top |