mRNA_H-elongata_contig83820.15999.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig83820.15999.1 vs. uniprot
Match: D7FQK5_ECTSI ([Skp1-protein]-hydroxyproline N-acetylglucosaminyltransferase, family GT60 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FQK5_ECTSI) HSP 1 Score: 281 bits (719), Expect = 1.650e-90 Identity = 132/206 (64.08%), Postives = 153/206 (74.27%), Query Frame = 1
Query: 1 RTQPRLPTPTSHPSIHPPQYPPVSDSWSKQDTKIWAGIASFRDSRCGQTLFNMFNKAKHPGRVFAGVVQQNQEGDVGCLERYCELM-EKSGIGPCAFRENVRVLEVDARDAQGPCWGRHLQARPCAGYLLADEEFCMQTDSHMDFVDSWDTLMMEEWAATRNEYGVLSTYVQDVSSLGINLGKRWEVGHLCEILFPPSNQPRNQQA 615
R +P+ P + S P YPP +DSWS DT +W GIASFRD +CG+TLFN+F+KA +P R+ AGVVQQN E D GCL YC LM EK G C FR+N+RVLE+ A +AQGPCW RHLQ+ YLLADEEFCMQ DSHMDFV+ WD MMEEWAAT NEYGVLSTYVQD LG+N+ K+WEV HLCE+ F PS QPRNQQA
Sbjct: 90 RVEPKEWIPITRSSTAPQPYPPETDSWSYTDTTLWTGIASFRDPQCGETLFNLFSKASYPERLTAGVVQQNLEDDEGCLATYCRLMGEKDGKKDCPFRDNIRVLEMHASEAQGPCWARHLQS-----YLLADEEFCMQVDSHMDFVEGWDMAMMEEWAATNNEYGVLSTYVQDSRVLGVNVSKKWEVAHLCEVYFSPSQQPRNQQA 290
BLAST of mRNA_H-elongata_contig83820.15999.1 vs. uniprot
Match: A0A6H5L6U7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L6U7_9PHAE) HSP 1 Score: 283 bits (723), Expect = 3.680e-89 Identity = 133/208 (63.94%), Postives = 153/208 (73.56%), Query Frame = 1
Query: 1 RTQPRLPTPTSHPSIHPPQYPPVSDSWSKQDTKIWAGIASFRDSRCGQTLFNMFNKAKHPGRVFAGVVQQNQEGDVGCLERYCELME-KSGIGPCAFRENVRVLEVDARDAQGPCWGRHLQARPCAGYLLADEEFCMQTDSHMDFVDSWDTLMMEEWAATRNEYGVLSTYVQDVSSLGINLGKRWEVGHLCEILFPPSNQPRNQQARV 621
R +P+ P + S P YPP +DSWS DT +W GIASFRD +CG+TLFN+F+KA +P R+ AGVVQQN E D GCL YC LM K G C FREN+RVLE+ A +AQGPCW RHLQ+ YLLADEEFCMQ DSHMDFV+ WD MMEEWAAT NEYGVLSTYVQD LG+N+ K+WEV HLCE+ F PS QPRNQQAR
Sbjct: 48 RVEPKEWIPITRSSTAPQPYPPETDSWSYTDTTLWTGIASFRDPQCGETLFNLFSKASYPERLTAGVVQQNLEDDEGCLATYCRLMGVKDGAKDCPFRENIRVLEMHASEAQGPCWARHLQS-----YLLADEEFCMQVDSHMDFVEGWDMAMMEEWAATNNEYGVLSTYVQDSRVLGVNVSKKWEVAHLCEVYFSPSQQPRNQQARA 250
BLAST of mRNA_H-elongata_contig83820.15999.1 vs. uniprot
Match: A0A836CB83_9STRA (GlcNAc-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CB83_9STRA) HSP 1 Score: 226 bits (575), Expect = 2.540e-68 Identity = 105/191 (54.97%), Postives = 126/191 (65.97%), Query Frame = 1
Query: 49 PPQYPPVSDSWSKQDTKIWAGIASFRDSRCGQTLFNMFNKAKHPGRVFAGVVQQNQEGDVGCLERYCELMEKSGIGPCAFRENVRVLEVDARDAQGPCWGRHLQARPCAGYLLADEEFCMQTDSHMDFVDSWDTLMMEEWAATRNEYGVLSTYVQDVSSLGINLGKRWEVGHLCEILFPPSNQPRNQQARV 621
P +PP +DSWS + +W GIAS+RD RCG+TL NMF KAKHP RV VVQQ EGD C++ YC L K G C F +NVRVL DA +A GP WGRHLQ YLL DEEFC+Q DSHMD + W+ +M EWA NE+ VLSTYVQDV LG+N+G +E HLCEIL+ Q RN+ A+
Sbjct: 29 PQPFPPPTDSWSTAEATLWVGIASYRDPRCGKTLHNMFTKAKHPERVHVAVVQQMVEGDADCMDDYCALAGKDANGECPFAKNVRVLRTDAAEAAGPTWGRHLQQ-----YLLRDEEFCLQIDSHMDMIQDWEAGLMAEWAQINNEHAVLSTYVQDVEDLGVNVGGHFETSHLCEILW--EEQVRNEGAKA 212
BLAST of mRNA_H-elongata_contig83820.15999.1 vs. uniprot
Match: A0A7S2XXE5_9STRA (Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2XXE5_9STRA) HSP 1 Score: 203 bits (517), Expect = 1.940e-62 Identity = 100/196 (51.02%), Postives = 129/196 (65.82%), Query Frame = 1
Query: 49 PPQYPPVSDSWSKQDTKIWAGIASFRDSRCGQTLFNMFNKAKHPGRVFAGVVQQNQEGDVGCLERYCELM----EKSGIGPCAFRENVRVLEVDARDAQGPCWGRHLQARPCAGYLLADE-EFCMQTDSHMDFVDSWDTLMMEEWAATRNEYGVLSTYVQDVSSLGINLGKRWEVGHLCEILFPPSNQPRNQQARV 621
P +PP SDS+++ DT IW GIASFRDSRC +TL N+F KAK+P RV+ G+VQQN + DV CLE YC M K C + +R+L V AR+A+GP +GRHL + YLL DE EFCMQTDSHMD+VD WD M++ W A NEYGV++TYV L NL EV HLC++++ PRN++A+
Sbjct: 52 PQPHPPKSDSYTRSDTTIWNGIASFRDSRCPRTLVNLFQKAKYPERVYVGLVQQNGDDDVDCLEEYCNRMGSTNRKEDEAKCPYYSQIRILRVHAREARGPTYGRHLMS-----YLLRDEDEFCMQTDSHMDYVDDWDVKMLDMWGAIGNEYGVITTYVNRFEDLNKNLNGVNEVPHLCDLVWR-DGLPRNKEAKA 241
BLAST of mRNA_H-elongata_contig83820.15999.1 vs. uniprot
Match: A0A7S3UPC0_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3UPC0_HETAK) HSP 1 Score: 196 bits (498), Expect = 9.170e-60 Identity = 91/187 (48.66%), Postives = 121/187 (64.71%), Query Frame = 1
Query: 58 YPPVSDSWSKQDTKIWAGIASFRDSRCGQTLFNMFNKAKHPGRVFAGVVQQNQEGDVGCLERYCELMEKSGI------------GPCAFRENVRVLEVDARDAQGPCWGRHLQARPCAGYLLADEEFCMQTDSHMDFVDSWDTLMMEEWAATRNEYGVLSTYVQDVSSLGINLGKRWEVGHLCEILF 582
+PP +++S +DT I+ GI+ FRDSRC +TL+N++ KA++P RVF G+VQQN EGDV C+++YCELM G G C + +R V A+GP +GRHLQ YLL DE+FCMQ DSHMDF+D WDTL +E W RNEY VL+TYV V L N+ RWEV ++C++ F
Sbjct: 52 HPPKDENYSSKDTTIYVGISGFRDSRCPKTLYNLYTKAENPARVFVGLVQQNAEGDVDCVDKYCELMGYRGQKTDAARARPAAEGGCPYFAQIRANRVSHLLARGPTFGRHLQV-----YLLRDEQFCMQIDSHMDFMDHWDTLNLEHWGLARNEYAVLTTYVHKVEDLNRNINNRWEVPNICKLRF 233
BLAST of mRNA_H-elongata_contig83820.15999.1 vs. uniprot
Match: A0A6H5KPV9_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KPV9_9PHAE) HSP 1 Score: 201 bits (510), Expect = 2.960e-58 Identity = 94/191 (49.21%), Postives = 123/191 (64.40%), Query Frame = 1
Query: 61 PPVSDSWSKQDTKIWAGIASFRDSRCGQTLFNMFNKAKHPGRVFAGVVQQNQEGDVGCLERYCELMEKSGIGP-CAFRENVRVLEVDARDAQGPCWGRHLQARPCAGYLLADEEFCMQTDSHMDFVDSWDTLMMEEWAATRNEYGVLSTYVQDVSSLGINLGKRWEVGHLCEILFPPS-NQPRNQQARVRT 627
PP + SW + DT I+ G++SFRD RC QTL N F+KAK+P R+ GVVQQN DV C+ YC++M GP C + +N++ L V+AR A GPC+GRHLQ+ Y+L DEEFCMQTDSHMD V WD +M W NEYG+L+TYV + L + EV HLC++ F + N PR QA++ T
Sbjct: 67 PPKTTSWKRSDTSIFVGVSSFRDKRCPQTLVNFFSKAKYPERITVGVVQQNDHEDVDCVVEYCKMMGGHAEGPLCPYFDNIKTLRVEARWAAGPCYGRHLQS-----YMLRDEEFCMQTDSHMDVVQDWDAKLMAMWGRVNNEYGILTTYVHKIEQLHEGYENKKEVPHLCQLGFTETGNHPRYVQAKLAT 252
BLAST of mRNA_H-elongata_contig83820.15999.1 vs. uniprot
Match: A0A4D9D890_9STRA (Uncharacterized protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9D890_9STRA) HSP 1 Score: 199 bits (506), Expect = 8.930e-57 Identity = 97/205 (47.32%), Postives = 128/205 (62.44%), Query Frame = 1
Query: 49 PPQYPPVSDSWSKQDTKIWAGIASFRDSRCGQTLFNMFNKAKHPGRVFAGVVQQNQEGDVGCLERYCE-LMEKSGIGP--------------CAFRENVRVLEVDARDAQGPCWGRHLQARPCAGYLLADEEFCMQTDSHMDFVDSWDTLMMEEWAATRNEYGVLSTYVQDVSSLGINLGKRWEVGHLCEILFPPSNQP-RNQQA 615
P YPP +DSW+ DT I I+SFRD RC +TL+N+F KA +P RV+AGVVQQN GDV CL YCE + E+ GIGP C + V++L V A DA+GP +GR+L YL+ DEEFCMQ D+HMDF D WD +++ W NEYGVL+TYV ++ L +NL R+EV +C + + P + RN+QA
Sbjct: 57 PQPYPPKTDSWTLNDTSIMVSISSFRDYRCPKTLYNLFTKAANPDRVYAGVVQQNNAGDVDCLNDYCEKIKEERGIGPDASAADPNLRITQNCPHADQVKMLRVQAEDAKGPTYGRYL-----GSYLVGDEEFCMQIDAHMDFEDHWDKQLLDMWGLANNEYGVLTTYVPNLDQLHVNLNGRFEVPQVCRVTYTPGEKMVRNEQA 256
BLAST of mRNA_H-elongata_contig83820.15999.1 vs. uniprot
Match: A0A7S2UY74_9STRA (Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UY74_9STRA) HSP 1 Score: 179 bits (453), Expect = 4.040e-53 Identity = 90/217 (41.47%), Postives = 125/217 (57.60%), Query Frame = 1
Query: 46 HPPQYPPVSDSWSKQDTKIWAGIASFRDSRCGQTLFNMFNKAKHPGRVFAGVVQQNQEGDVGCLERYCELM--EKSGIGP------------------------CAFRENVRVLEVDARDAQGPCWGRHLQARPCAGYLLADEEFCMQTDSHMDFVDSWDTLMMEEWAATRNEYGVLSTYVQDVSSLGINLGKRWEVGHLCEILFPPSNQPRNQQAR 618
HP Y P +S+ D I+ GIA++RD+RC +TL+NMF KAK+P R+ G+V QN D C+E YC+LM + + GP C ++V V + A GP +GRHLQ+ ++ DEEFCMQ+DSHMD+VD WD M+E+W T NEY V++TYV + L N+ R+EV HLC++ F P+ PRN QA+
Sbjct: 4 HPRPYAPKDESYKDPDKTIFVGIAAYRDTRCAKTLYNMFTKAKYPDRLRIGLVWQNDVTDADCVEGYCKLMGHDPNPAGPPKKAPVAGLPPEPGAQADADMSRNCPHFHQIKVHRVTHKLAVGPTFGRHLQSN-----MIEDEEFCMQSDSHMDYVDHWDEKMVEQWGMTENEYAVITTYVNRLEDLNRNINGRYEVPHLCQMEFLPNGLPRNIQAK 215
BLAST of mRNA_H-elongata_contig83820.15999.1 vs. uniprot
Match: A0A7S3YLX0_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3YLX0_HETAK) HSP 1 Score: 184 bits (468), Expect = 6.260e-52 Identity = 97/208 (46.63%), Postives = 127/208 (61.06%), Query Frame = 1
Query: 58 YPPVSDSWSKQDTKIWAGIASFRDSRCGQTLFNMFNKAKHPGRVFAGVVQQ-NQEGDVGCLERYCELMEKSGIGP-----------CAFRENVRVLEVDARDAQGPCWGRHLQARPCAGYLLADEEFCMQTDSHMDFVDSWDTLMMEEWAATRNEYGVLSTYVQDVSSL--GINLGKRWEVGHLCEILF-------PPSNQPRNQQAR 618
YPP SDSW + +T I+ GIA+FRDSRC +TLFNMF KAK+P RVF G+VQQ ++ D C+E+YCELM + G C E VR+ V A+GP +GRHLQ+ YLL DEEFCMQTDSHMD++D WD ++ W A NEY VL+TYV L G L R++V H+C++ + PRN++A+
Sbjct: 21 YPPKSDSWKQDNTTIFVGIAAFRDSRCPKTLFNMFTKAKNPDRVFVGLVQQWDETKDTDCIEKYCELMGAAVAGQDQAADRRRAQACPHFEQVRIHRVSHLLARGPTFGRHLQS-----YLLRDEEFCMQTDSHMDYIDHWDQEVLAAWGAAHNEYAVLATYVNRFEDLESGRALHPRFQVPHICQLEYVGGAYMGAKGMLPRNKRAK 223
BLAST of mRNA_H-elongata_contig83820.15999.1 vs. uniprot
Match: A0A835ZER6_9STRA (GlcNAc-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZER6_9STRA) HSP 1 Score: 174 bits (441), Expect = 1.890e-48 Identity = 89/202 (44.06%), Postives = 124/202 (61.39%), Query Frame = 1
Query: 49 PPQYPPVSDSWSKQDTKIWAGIASFRDSRCGQTLFNMFNKAKHPGRVFAGVVQQNQ-EGDVGCLERYCELME-------KSGIGPCAFRENVRVLEVDARDAQGPCWGRHLQARPCAGYLLADEEFCMQTDSHMDFVDSWDTLMMEEWAATRNEYGVLSTYVQDVSSLGI---NLGKRWEVGHLCEILFPPSNQPRNQQARV 621
P +PP S+S+ + I+ G+++FRD RC +TL+N F+KAK+P R+ G+VQQN D CL+ YC+LM+ K G C ++E +++ V+A+ A GPC+GRH+Q+ Y+L DEEFCMQTDSHMD V WD M W T NEYGVL+TYV S+G + V HLC++ F N PR QA++
Sbjct: 25 PKPHPPHSESYKDPNATIFIGVSAFRDKRCPKTLYNYFSKAKNPHRLRVGLVQQNSISEDPDCLQGYCDLMKADEKFATKFG-DKCPYKEQIKITRVEAKLAAGPCYGRHMQS-----YMLRDEEFCMQTDSHMDVVPEWDEEMAAMWGRTENEYGVLTTYVHVKESIGTLEQAKDRNKLVPHLCQVSFTGGNNPRYVQAKL 220 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig83820.15999.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig83820.15999.1 >prot_H-elongata_contig83820.15999.1 ID=prot_H-elongata_contig83820.15999.1|Name=mRNA_H-elongata_contig83820.15999.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=210bp RTQPRLPTPTSHPSIHPPQYPPVSDSWSKQDTKIWAGIASFRDSRCGQTLback to top mRNA from alignment at H-elongata_contig83820:520..2682+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig83820.15999.1 ID=mRNA_H-elongata_contig83820.15999.1|Name=mRNA_H-elongata_contig83820.15999.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=2163bp|location=Sequence derived from alignment at H-elongata_contig83820:520..2682+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig83820:520..2682+ >mRNA_H-elongata_contig83820.15999.1 ID=mRNA_H-elongata_contig83820.15999.1|Name=mRNA_H-elongata_contig83820.15999.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1260bp|location=Sequence derived from alignment at H-elongata_contig83820:520..2682+ (Himanthalia elongata Himel1 dioecious)back to top |