mRNA_H-elongata_contig83724.15995.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig83724.15995.1
Unique NamemRNA_H-elongata_contig83724.15995.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig83724.15995.1 vs. uniprot
Match: A0A6H5KQH2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQH2_9PHAE)

HSP 1 Score: 107 bits (268), Expect = 5.960e-24
Identity = 47/60 (78.33%), Postives = 53/60 (88.33%), Query Frame = 1 
Query:  274 YIFANGDVYDGDFIRDQAWGQGIYRYATSGGGAGNCYVGSWEADRRHGNGVLHWKNGSRY 453
            YIFANGDVYDGDF RD+A GQG+YR A+SG GAG+CYVG WEADRRHG G+L W+NGSRY
Sbjct:   28 YIFANGDVYDGDFRRDRACGQGVYRTASSGNGAGDCYVGGWEADRRHGKGLLRWENGSRY 87
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BLAST of mRNA_H-elongata_contig83724.15995.1 vs. uniprot
Match: D7FWY6_ECTSI (MORN repeat variant family protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FWY6_ECTSI)

HSP 1 Score: 108 bits (269), Expect = 3.130e-23
Identity = 64/82 (78.05%), Postives = 70/82 (85.37%), Query Frame = 1 
Query:  205 VAPGGCERYTXXXXXXXXXXXXXYIFANGDVYDGDFIRDQAWGQGIYRYATSGGGAGNCYVGSWEADRRHGNGVLHWKNGSR 450
            V+PGG ERY XXXXXXXXXXXXX  FANGDVYDGDF RD+A GQG+YR A+SG GAG+CYVG WEADRRHG G L W+NGSR
Sbjct:  605 VSPGGRERYVXXXXXXXXXXXXXXXFANGDVYDGDFRRDRACGQGVYRTASSGNGAGDCYVGGWEADRRHGKGRLRWENGSR 686
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig83724.15995.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KQH2_9PHAE5.960e-2478.33Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FWY6_ECTSI3.130e-2378.05MORN repeat variant family protein n=1 Tax=Ectocar... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig83724contigH-elongata_contig83724:755..2608 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score109.8
Seed ortholog evalue1.8e-21
Seed eggNOG ortholog2880.D7FWY6
KEGG koko:K03283
KEGG TC1.A.33.1
KEGG Pathwayko03040,ko04010,ko04141,ko04144,ko04213,ko04612,ko04915,ko05134,ko05145,ko05162,ko05164,ko05169,map03040,map04010,map04141,map04144,map04213,map04612,map04915,map05134,map05145,map05162,map05164,map05169
KEGG ModuleM00353,M00355
EggNOG free text desc.Translation initiation factor IF-2, N-terminal region
EggNOG OGsCOG4642@1,COG5253@1,KOG0229@2759,KOG0231@2759
COG Functional cat.T
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01009,ko03009,ko03029,ko03041,ko03051,ko03110,ko04131,ko04147,ko04516
Hectar predicted targeting categoryother localisation
Exons5
Model size714
Cds size693
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig83724.15995.1prot_H-elongata_contig83724.15995.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig83724 755..2587 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931243.106405-CDS-H-elongata_contig83724:754..8811622931243.106405-CDS-H-elongata_contig83724:754..881Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig83724 755..881 -
1691679756.6828072-CDS-H-elongata_contig83724:754..8811691679756.6828072-CDS-H-elongata_contig83724:754..881Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig83724 755..881 -
1622931243.123802-CDS-H-elongata_contig83724:1072..12031622931243.123802-CDS-H-elongata_contig83724:1072..1203Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig83724 1073..1203 -
1691679756.69772-CDS-H-elongata_contig83724:1072..12031691679756.69772-CDS-H-elongata_contig83724:1072..1203Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig83724 1073..1203 -
1622931243.1387908-CDS-H-elongata_contig83724:1650..18341622931243.1387908-CDS-H-elongata_contig83724:1650..1834Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig83724 1651..1834 -
1691679756.7092032-CDS-H-elongata_contig83724:1650..18341691679756.7092032-CDS-H-elongata_contig83724:1650..1834Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig83724 1651..1834 -
1622931243.1575673-CDS-H-elongata_contig83724:2105..22221622931243.1575673-CDS-H-elongata_contig83724:2105..2222Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig83724 2106..2222 -
1691679756.719461-CDS-H-elongata_contig83724:2105..22221691679756.719461-CDS-H-elongata_contig83724:2105..2222Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig83724 2106..2222 -
1622931243.178914-CDS-H-elongata_contig83724:2453..25871622931243.178914-CDS-H-elongata_contig83724:2453..2587Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig83724 2454..2587 -
1691679756.7289915-CDS-H-elongata_contig83724:2453..25871691679756.7289915-CDS-H-elongata_contig83724:2453..2587Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig83724 2454..2587 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931243.2017465-UTR-H-elongata_contig83724:2587..26081622931243.2017465-UTR-H-elongata_contig83724:2587..2608Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig83724 2588..2608 -
1691679756.7364733-UTR-H-elongata_contig83724:2587..26081691679756.7364733-UTR-H-elongata_contig83724:2587..2608Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig83724 2588..2608 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig83724.15995.1

>prot_H-elongata_contig83724.15995.1 ID=prot_H-elongata_contig83724.15995.1|Name=mRNA_H-elongata_contig83724.15995.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=231bp
MGHIHAGEAHGIGVLAYASGEKYKGEFFGDMRCGRGVCYYPNGAKFAGHW
ERNMHQGFGIFVAPGGCERYTGHWQNDKKNGYGRYIFANGDVYDGDFIRD
QAWGQGIYRYATSGGGAGNCYVGSWEADRRHGNGVLHWKNGSRYEGYWKA
GNIEGKGLFHYACGDCYRGEFQANKKHGRGVYTWANANEFTGHFHNGLIE
GFGEMTYKTTGHRFKGYWKNNQKHGMGTFR*
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mRNA from alignment at H-elongata_contig83724:755..2608-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig83724.15995.1 ID=mRNA_H-elongata_contig83724.15995.1|Name=mRNA_H-elongata_contig83724.15995.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1854bp|location=Sequence derived from alignment at H-elongata_contig83724:755..2608- (Himanthalia elongata Himel1 dioecious)
AGGAAAAATGGAGACAAATACATGGGGCATATCCACGCGGGAGAGGCGCA
CGGAATCGGAGTCCTCGCGTATGCCTCTGGGGAGAAGTACAAAGGCGAAT
TCTTCGGCGACATGCGATGTGGGCGAGGTGTTTGCTACTACCCCAACGGA
GCAAAGTGAGTACTACATTGTAATTTCCTCCATGGTCACGGAAGCTTCGC
GCATGCCCCTCGGGCGTATATCCGTGTTAACGCATTGTGAACCATCTTCC
GGAGACATGTCACTCCTCCCGTCAAAGTTATTGCTCTCCCGACCAGGAGC
CATGAACAATGACACCAGCTGACCCCCGACTCATTGGATCGAATTTTAGA
TGTAGTAAATCATAACGCAATGCTTTCTCGGTGTAGGTTTGCGGGACACT
GGGAGCGAAATATGCACCAGGGATTCGGTATATTTGTCGCCCCTGGGGGG
TGCGAACGTTATACGGGTCACTGGCAAAACGACAAGAAGAATGGCTACGG
CAGGTGCAGTGCTGATTTCACTCTGTGCGATATCATCGCCGTTTAACGAG
GGCATTGAGCGCACCCGTGTCTCTAGAAACTCCCACGTTTCTCTTTCGGT
CAATTCAGCCCTTTGTTCCCGGGTTGTTTTGCTGCTCATCGGGTCCTAGA
TATATACAACGAGTCACGCACGCAGTAGGACGAATATATATATATATATA
TTTATATATATGCATATTGCGTATTTTCTGGAACTTTAAGATATTACGAG
TATAAAGAACTTCAAAACGCGCAGATACATTTTCGCGAACGGAGATGTCT
ACGATGGGGATTTTATACGAGATCAGGCGTGGGGGCAGGGGATTTACCGA
TACGCAACTTCCGGCGGCGGAGCAGGAAATTGCTACGTGGGGAGCTGGGA
AGCCGACCGAAGACATGGAAATGGGGTTTTACACTGGAAAAATGGCAGCC
GATACGAGGTACTCTCGCGCATACTTGTAGACTGACGGAAAACAAACGGT
AGTAGAACAAATGGTTGTACAACAAACAGCGGTATAACAAGCGGTAGTAC
AACAAATGGCAGTACAACAAATGGTAGAAACGGCCTTCGCCATTGCTCAA
AATCCTTCAAACCGACATTTCATACTGTATCCAAGGTCAGTCGACGTAGT
CCGGAAGATTATGACGACGTGTTTAGCACTAAAATTCAAATGTCCTCATA
TTATCCGGACCAGGGGATGTACTTGAAGCCGACCAATCGCGCCCCTCGGG
GGGTCGGGGAGAACTCGGGGAAAGAGGGGTCGAGGGAACTACGTAGAGAT
TCACCGCGCGGTAACTACTTGTTCACAGAAGCAGCAGTCGCTCTCATCAA
ATGTTTTCGTCGCATGTCCCTCATAAGCCCCTCGGCCCGACCTGATTATG
GAAAGGGCTATTGGAAAGCCGGAAATATCGAAGGAAAAGGCTTGTTTCAT
TACGCTTGTGGAGATTGCTACCGAGGGGAGTTTCAGGCGAATAAGAAGCA
CGGAAGGGGGGTCTACACCTGGGCAAATGCCAACGAGTGAGGCGGCGACG
ACCAATCAACAAGAGCAAAGACTATATAGTTTTTTCGCACGAGGACCCTG
AGTCTTGTTTGGTGCTGCTGCCTTGAAAAAGAGTACGCGAAGATGCCGTA
ATTGATTCCATTCTTAAGCCTTGACTACTCGCGTTGTTGGTGAATGGGAC
ATACATTGCTTCGATTTTCGTATTTAGATTCACCGGGCATTTCCACAACG
GTCTCATCGAAGGGTTTGGGGAGATGACCTACAAGACAACCGGTCATCGA
TTCAAAGGCTACTGGAAAAATAATCAGAAGCACGGAATGGGCACTTTCCG
GTAA
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Coding sequence (CDS) from alignment at H-elongata_contig83724:755..2608-

>mRNA_H-elongata_contig83724.15995.1 ID=mRNA_H-elongata_contig83724.15995.1|Name=mRNA_H-elongata_contig83724.15995.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1386bp|location=Sequence derived from alignment at H-elongata_contig83724:755..2608- (Himanthalia elongata Himel1 dioecious)
ATGGGGCATATCCACGCGGGAGAGGCGCACGGAATCGGAGTCCTCGCGTA
TGCCTCTGGGGAGAAGTACAAAGGCGAATTCTTCGGCGACATGCGATGTG
GGCGAGGTGTTTGCTACTACCCCAACGGAGCAAAATGGGGCATATCCACG
CGGGAGAGGCGCACGGAATCGGAGTCCTCGCGTATGCCTCTGGGGAGAAG
TACAAAGGCGAATTCTTCGGCGACATGCGATGTGGGCGAGGTGTTTGCTA
CTACCCCAACGGAGCAAAGTTTGCGGGACACTGGGAGCGAAATATGCACC
AGGGATTCGGTATATTTGTCGCCCCTGGGGGGTGCGAACGTTATACGGGT
CACTGGCAAAACGACAAGAAGAATGGCTACGGCAGGTTTGCGGGACACTG
GGAGCGAAATATGCACCAGGGATTCGGTATATTTGTCGCCCCTGGGGGGT
GCGAACGTTATACGGGTCACTGGCAAAACGACAAGAAGAATGGCTACGGC
AGATACATTTTCGCGAACGGAGATGTCTACGATGGGGATTTTATACGAGA
TCAGGCGTGGGGGCAGGGGATTTACCGATACGCAACTTCCGGCGGCGGAG
CAGGAAATTGCTACGTGGGGAGCTGGGAAGCCGACCGAAGACATGGAAAT
GGGGTTTTACACTGGAAAAATGGCAGCCGATACGAGATACATTTTCGCGA
ACGGAGATGTCTACGATGGGGATTTTATACGAGATCAGGCGTGGGGGCAG
GGGATTTACCGATACGCAACTTCCGGCGGCGGAGCAGGAAATTGCTACGT
GGGGAGCTGGGAAGCCGACCGAAGACATGGAAATGGGGTTTTACACTGGA
AAAATGGCAGCCGATACGAGGGCTATTGGAAAGCCGGAAATATCGAAGGA
AAAGGCTTGTTTCATTACGCTTGTGGAGATTGCTACCGAGGGGAGTTTCA
GGCGAATAAGAAGCACGGAAGGGGGGTCTACACCTGGGCAAATGCCAACG
AGGCTATTGGAAAGCCGGAAATATCGAAGGAAAAGGCTTGTTTCATTACG
CTTGTGGAGATTGCTACCGAGGGGAGTTTCAGGCGAATAAGAAGCACGGA
AGGGGGGTCTACACCTGGGCAAATGCCAACGAATTCACCGGGCATTTCCA
CAACGGTCTCATCGAAGGGTTTGGGGAGATGACCTACAAGACAACCGGTC
ATCGATTCAAAGGCTACTGGAAAAATAATCAGAAGCACGGAATGGGCACT
TTCCGGTAAATTCACCGGGCATTTCCACAACGGTCTCATCGAAGGGTTTG
GGGAGATGACCTACAAGACAACCGGTCATCGATTCAAAGGCTACTGGAAA
AATAATCAGAAGCACGGAATGGGCACTTTCCGGTAA
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