mRNA_H-elongata_contig83645.15991.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig83645.15991.1 vs. uniprot
Match: A0A6H5KTC5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KTC5_9PHAE) HSP 1 Score: 174 bits (440), Expect = 1.000e-48 Identity = 76/116 (65.52%), Postives = 97/116 (83.62%), Query Frame = 1
Query: 1 SKDKKVRICSTCFTAGQAFRSALLEGSEEKALAAYKTGCVNLRAPYTIYHNELPLHCAAAGGNVSLLSWLLEDRCCPMFSDKESTIALGDRKRRSVMAAAMGSGQLETMRYLAFTE 348
+ +KKVR+CSTC+ AG+ FR A L GSEE A+AA+ TGCVNLR PYTIYHNELP+HCAA+GGN+++L+WL++DRCCP+F D+E IALGD +R SVM AA SG ++ MRYLAFT+
Sbjct: 428 TSEKKVRVCSTCYVAGEDFRKACLSGSEEGAMAAFSTGCVNLRVPYTIYHNELPVHCAASGGNLNILAWLVDDRCCPLFLDREKKIALGDSRRLSVMGAAAASGHVQIMRYLAFTQ 543
BLAST of mRNA_H-elongata_contig83645.15991.1 vs. uniprot
Match: D7FYF4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FYF4_ECTSI) HSP 1 Score: 145 bits (366), Expect = 4.380e-38 Identity = 70/116 (60.34%), Postives = 89/116 (76.72%), Query Frame = 1
Query: 1 SKDKKVRICSTCFTAGQAFRSALLEGSEEKALAAYKTGCVNLRAPYTIYHNELPLHCAAAGGNVSLLSWLLEDRCCPMFSDKESTIALGDRKRRSVMAAAMGSGQLETMRYLAFTE 348
S +++VR+C TC++ G+AFR ALL GS + A+ A+ TGCVNLRAP++ ELP+HCAAAGGNVSL+ WLLEDRCCP+F D E T+ D RSVMAAA SG++E MRYL FT+
Sbjct: 568 STERRVRVCRTCYSVGKAFRRALLRGSYQGAMEAHGTGCVNLRAPFS--DRELPVHCAAAGGNVSLMMWLLEDRCCPIFMDDEKTMPHLDGAGRSVMAAAADSGRVEMMRYLTFTQ 681
BLAST of mRNA_H-elongata_contig83645.15991.1 vs. uniprot
Match: A0A6H5KUU5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KUU5_9PHAE) HSP 1 Score: 145 bits (366), Expect = 4.470e-38 Identity = 69/116 (59.48%), Postives = 90/116 (77.59%), Query Frame = 1
Query: 1 SKDKKVRICSTCFTAGQAFRSALLEGSEEKALAAYKTGCVNLRAPYTIYHNELPLHCAAAGGNVSLLSWLLEDRCCPMFSDKESTIALGDRKRRSVMAAAMGSGQLETMRYLAFTE 348
S +++VR+C TC++ G++FR ALL GS + A+ AY TGCVNLRAP++ ELP+HCAAAGGNVSL+ WL+EDRCCP+F D E T+ D RSVMAAA SG++E MRYL+FT+
Sbjct: 638 STERRVRVCRTCYSVGKSFRRALLRGSYQGAMEAYGTGCVNLRAPFS--DRELPVHCAAAGGNVSLMMWLVEDRCCPIFMDDEKTMPHLDGAGRSVMAAAADSGRVEMMRYLSFTQ 751
BLAST of mRNA_H-elongata_contig83645.15991.1 vs. uniprot
Match: D8LDM9_ECTSI (FYVE-type domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LDM9_ECTSI) HSP 1 Score: 134 bits (338), Expect = 3.470e-37 Identity = 55/83 (66.27%), Postives = 73/83 (87.95%), Query Frame = 1
Query: 1 SKDKKVRICSTCFTAGQAFRSALLEGSEEKALAAYKTGCVNLRAPYTIYHNELPLHCAAAGGNVSLLSWLLEDRCCPMFSDKE 249
+ +KKVR+CS+C+ AG+ FR A L GSEE A+AA+ TGCVNLR PYTIYHNELP+HCAA+GGN+++L+WL++DRCCP+F D+E
Sbjct: 104 TSEKKVRVCSSCYGAGEDFRKACLSGSEEGAMAAFSTGCVNLRVPYTIYHNELPVHCAASGGNLNILAWLVDDRCCPLFLDRE 186
BLAST of mRNA_H-elongata_contig83645.15991.1 vs. uniprot
Match: A0A836CC14_9STRA (FYVE-type domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CC14_9STRA) HSP 1 Score: 132 bits (333), Expect = 3.200e-36 Identity = 61/111 (54.95%), Postives = 81/111 (72.97%), Query Frame = 1
Query: 4 KDKKVRICSTCFTAGQAFRSALLEGSEEKALAAYKTGCVNLRAPYTIYHNELPLHCAAAGGNVSLLSWLLEDRCCPMFSDKESTIALGDRKRRSVMAAAMGSGQLETMRYL 336
+++K RIC TC +AFR+ALL G + A AAY+ GCVNLR PY+IY N LP+HCAA GG+++LL+WLLE++ CP+F D TIALG+ ++ SVMA A +G MRYL
Sbjct: 84 QERKCRICDTCAETNEAFRAALLAGDDAAARAAYRRGCVNLRCPYSIYLNGLPVHCAAEGGSMALLAWLLEEKHCPLFKDLSRTIALGNGRKESVMAVAAQNGHTHIMRYL 194
BLAST of mRNA_H-elongata_contig83645.15991.1 vs. uniprot
Match: A0A6H5KTY3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KTY3_9PHAE) HSP 1 Score: 131 bits (329), Expect = 4.170e-33 Identity = 58/108 (53.70%), Postives = 81/108 (75.00%), Query Frame = 1
Query: 13 KVRICSTCFTAGQAFRSALLEGSEEKALAAYKTGCVNLRAPYTIYHNELPLHCAAAGGNVSLLSWLLEDRCCPMFSDKESTIALGDRKRRSVMAAAMGSGQLETMRYL 336
++R+C TC A +AFR+ALL G E A++AY TGCVNL PYT++H ELP+HCAAAGGNV LLSWL+E+ CP+F+D + + + D + +V+ AA +GQ++ MRYL
Sbjct: 559 RMRVCKTCNAAMEAFRTALLLGRAEDAMSAYSTGCVNLDRPYTVFHGELPVHCAAAGGNVGLLSWLVEELGCPIFTDSDKKVPIKDLRSLTVLGAAAVNGQVQAMRYL 666
BLAST of mRNA_H-elongata_contig83645.15991.1 vs. uniprot
Match: D7FYF5_ECTSI (FYVE-type domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FYF5_ECTSI) HSP 1 Score: 116 bits (290), Expect = 7.540e-28 Identity = 51/96 (53.12%), Postives = 71/96 (73.96%), Query Frame = 1
Query: 13 KVRICSTCFTAGQAFRSALLEGSEEKALAAYKTGCVNLRAPYTIYHNELPLHCAAAGGNVSLLSWLLEDRCCPMFSDKESTIALGDRKRRSVMAAA 300
++R+C TC A +AFR+ALL G E A++AY TGCVNL PYT++H ELP+HCAAAGGNV LLSWL+E+ C +F+D + + + D + +V+ AA
Sbjct: 557 RMRVCKTCNAAMEAFRTALLLGRAEDAMSAYSTGCVNLDRPYTVFHGELPVHCAAAGGNVGLLSWLVEELGCSIFTDSDKKVPIRDLRSLTVLGAA 652
BLAST of mRNA_H-elongata_contig83645.15991.1 vs. uniprot
Match: A0A7S3YF48_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3YF48_HETAK) HSP 1 Score: 86.3 bits (212), Expect = 1.570e-17 Identity = 49/120 (40.83%), Postives = 67/120 (55.83%), Query Frame = 1
Query: 7 DKKVRICSTCFTAGQAFRSALLEGSEEKALAAYKTGCVNLRAPYTIYHNELPLHCAAAGGNVSLLSWLLEDRCC----------PMFSDKESTIALGDRKRRSVMAAAMGSGQLETMRYL 336
+KK R+C C A + FR+AL G AAY TG VNLR PYT++ E P+HCAAAGG++ LL+WL+++R P+F+ T S M+ A +G LE MR+L
Sbjct: 129 EKKARVCRGCQWAMEDFRAALRRGDAPGVRAAYATGVVNLRTPYTVHGGEYPVHCAAAGGSLPLLAWLVDERGAFVRDPQSKQRPLFASDGIT---------SCMSLAAVNGNLEMMRWL 239
BLAST of mRNA_H-elongata_contig83645.15991.1 vs. uniprot
Match: A0A7S4QY11_9STRA (Hypothetical protein n=2 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4QY11_9STRA) HSP 1 Score: 80.9 bits (198), Expect = 2.010e-15 Identity = 44/122 (36.07%), Postives = 67/122 (54.92%), Query Frame = 1
Query: 7 DKKVRICSTCFTAGQAFRSALLEGSEEKALAAYKTGCVNLRAPYTIYHNEL--PLHCAAAGGNVSLLSWLLEDRCCPMF----------SDKESTIALGDRKRRSVMAAAMGSGQLETMRYL 336
+K V++C TC FR LL+G E+A++ + TG +NLR + E P+HCAA GGN+ LL WL++ CP+ S K ST + K R+V+ AM + +++ +RYL
Sbjct: 453 EKNVKVCKTCHFLSYKFRQTLLDGHYEEAVSLFHTGNINLRCQFYSTDGEASYPVHCAAEGGNIQLLQWLVDIHFCPIKQAGSGSKGKKSRKASTALIQTSKGRTVLDIAMTNQRVDILRYL 574
BLAST of mRNA_H-elongata_contig83645.15991.1 vs. uniprot
Match: A0A7S4S024_9STRA (Hypothetical protein n=3 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4S024_9STRA) HSP 1 Score: 78.6 bits (192), Expect = 1.310e-14 Identity = 44/130 (33.85%), Postives = 66/130 (50.77%), Query Frame = 1
Query: 7 DKKVRICSTCFTAGQAFRSALLEGSEEKALAAYKTGCVNLRAPYTIYHNEL--PLHCAAAGGNVSLLSWLLEDRCCPMF------------------SDKESTIALGDRKRRSVMAAAMGSGQLETMRYL 336
+K V +C C + R AL+ G ++ LA Y+TG VNLR PY E P+HCAA GGN+ +L WL++ RCCP++ SD + + RSV+ A+ +++ +RYL
Sbjct: 551 EKTVNVCKHCDFLAGSMRIALMGGDFDRVLALYETGNVNLRVPYMNVKGETLYPVHCAAMGGNLEVLKWLVDLRCCPIYTYEYRQNNLYNKKYNKKSSDNTGPTPILTSRGRSVLDIALKGPKVDLLRYL 680 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig83645.15991.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 15
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig83645.15991.1 >prot_H-elongata_contig83645.15991.1 ID=prot_H-elongata_contig83645.15991.1|Name=mRNA_H-elongata_contig83645.15991.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=116bp SKDKKVRICSTCFTAGQAFRSALLEGSEEKALAAYKTGCVNLRAPYTIYHback to top mRNA from alignment at H-elongata_contig83645:75..1999+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig83645.15991.1 ID=mRNA_H-elongata_contig83645.15991.1|Name=mRNA_H-elongata_contig83645.15991.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1925bp|location=Sequence derived from alignment at H-elongata_contig83645:75..1999+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig83645:75..1999+ >mRNA_H-elongata_contig83645.15991.1 ID=mRNA_H-elongata_contig83645.15991.1|Name=mRNA_H-elongata_contig83645.15991.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=696bp|location=Sequence derived from alignment at H-elongata_contig83645:75..1999+ (Himanthalia elongata Himel1 dioecious)back to top |