mRNA_H-elongata_contig83645.15991.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig83645.15991.1
Unique NamemRNA_H-elongata_contig83645.15991.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig83645.15991.1 vs. uniprot
Match: A0A6H5KTC5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KTC5_9PHAE)

HSP 1 Score: 174 bits (440), Expect = 1.000e-48
Identity = 76/116 (65.52%), Postives = 97/116 (83.62%), Query Frame = 1
Query:    1 SKDKKVRICSTCFTAGQAFRSALLEGSEEKALAAYKTGCVNLRAPYTIYHNELPLHCAAAGGNVSLLSWLLEDRCCPMFSDKESTIALGDRKRRSVMAAAMGSGQLETMRYLAFTE 348
            + +KKVR+CSTC+ AG+ FR A L GSEE A+AA+ TGCVNLR PYTIYHNELP+HCAA+GGN+++L+WL++DRCCP+F D+E  IALGD +R SVM AA  SG ++ MRYLAFT+
Sbjct:  428 TSEKKVRVCSTCYVAGEDFRKACLSGSEEGAMAAFSTGCVNLRVPYTIYHNELPVHCAASGGNLNILAWLVDDRCCPLFLDREKKIALGDSRRLSVMGAAAASGHVQIMRYLAFTQ 543          
BLAST of mRNA_H-elongata_contig83645.15991.1 vs. uniprot
Match: D7FYF4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FYF4_ECTSI)

HSP 1 Score: 145 bits (366), Expect = 4.380e-38
Identity = 70/116 (60.34%), Postives = 89/116 (76.72%), Query Frame = 1
Query:    1 SKDKKVRICSTCFTAGQAFRSALLEGSEEKALAAYKTGCVNLRAPYTIYHNELPLHCAAAGGNVSLLSWLLEDRCCPMFSDKESTIALGDRKRRSVMAAAMGSGQLETMRYLAFTE 348
            S +++VR+C TC++ G+AFR ALL GS + A+ A+ TGCVNLRAP++    ELP+HCAAAGGNVSL+ WLLEDRCCP+F D E T+   D   RSVMAAA  SG++E MRYL FT+
Sbjct:  568 STERRVRVCRTCYSVGKAFRRALLRGSYQGAMEAHGTGCVNLRAPFS--DRELPVHCAAAGGNVSLMMWLLEDRCCPIFMDDEKTMPHLDGAGRSVMAAAADSGRVEMMRYLTFTQ 681          
BLAST of mRNA_H-elongata_contig83645.15991.1 vs. uniprot
Match: A0A6H5KUU5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KUU5_9PHAE)

HSP 1 Score: 145 bits (366), Expect = 4.470e-38
Identity = 69/116 (59.48%), Postives = 90/116 (77.59%), Query Frame = 1
Query:    1 SKDKKVRICSTCFTAGQAFRSALLEGSEEKALAAYKTGCVNLRAPYTIYHNELPLHCAAAGGNVSLLSWLLEDRCCPMFSDKESTIALGDRKRRSVMAAAMGSGQLETMRYLAFTE 348
            S +++VR+C TC++ G++FR ALL GS + A+ AY TGCVNLRAP++    ELP+HCAAAGGNVSL+ WL+EDRCCP+F D E T+   D   RSVMAAA  SG++E MRYL+FT+
Sbjct:  638 STERRVRVCRTCYSVGKSFRRALLRGSYQGAMEAYGTGCVNLRAPFS--DRELPVHCAAAGGNVSLMMWLVEDRCCPIFMDDEKTMPHLDGAGRSVMAAAADSGRVEMMRYLSFTQ 751          
BLAST of mRNA_H-elongata_contig83645.15991.1 vs. uniprot
Match: D8LDM9_ECTSI (FYVE-type domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LDM9_ECTSI)

HSP 1 Score: 134 bits (338), Expect = 3.470e-37
Identity = 55/83 (66.27%), Postives = 73/83 (87.95%), Query Frame = 1
Query:    1 SKDKKVRICSTCFTAGQAFRSALLEGSEEKALAAYKTGCVNLRAPYTIYHNELPLHCAAAGGNVSLLSWLLEDRCCPMFSDKE 249
            + +KKVR+CS+C+ AG+ FR A L GSEE A+AA+ TGCVNLR PYTIYHNELP+HCAA+GGN+++L+WL++DRCCP+F D+E
Sbjct:  104 TSEKKVRVCSSCYGAGEDFRKACLSGSEEGAMAAFSTGCVNLRVPYTIYHNELPVHCAASGGNLNILAWLVDDRCCPLFLDRE 186          
BLAST of mRNA_H-elongata_contig83645.15991.1 vs. uniprot
Match: A0A836CC14_9STRA (FYVE-type domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CC14_9STRA)

HSP 1 Score: 132 bits (333), Expect = 3.200e-36
Identity = 61/111 (54.95%), Postives = 81/111 (72.97%), Query Frame = 1
Query:    4 KDKKVRICSTCFTAGQAFRSALLEGSEEKALAAYKTGCVNLRAPYTIYHNELPLHCAAAGGNVSLLSWLLEDRCCPMFSDKESTIALGDRKRRSVMAAAMGSGQLETMRYL 336
            +++K RIC TC    +AFR+ALL G +  A AAY+ GCVNLR PY+IY N LP+HCAA GG+++LL+WLLE++ CP+F D   TIALG+ ++ SVMA A  +G    MRYL
Sbjct:   84 QERKCRICDTCAETNEAFRAALLAGDDAAARAAYRRGCVNLRCPYSIYLNGLPVHCAAEGGSMALLAWLLEEKHCPLFKDLSRTIALGNGRKESVMAVAAQNGHTHIMRYL 194          
BLAST of mRNA_H-elongata_contig83645.15991.1 vs. uniprot
Match: A0A6H5KTY3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KTY3_9PHAE)

HSP 1 Score: 131 bits (329), Expect = 4.170e-33
Identity = 58/108 (53.70%), Postives = 81/108 (75.00%), Query Frame = 1
Query:   13 KVRICSTCFTAGQAFRSALLEGSEEKALAAYKTGCVNLRAPYTIYHNELPLHCAAAGGNVSLLSWLLEDRCCPMFSDKESTIALGDRKRRSVMAAAMGSGQLETMRYL 336
            ++R+C TC  A +AFR+ALL G  E A++AY TGCVNL  PYT++H ELP+HCAAAGGNV LLSWL+E+  CP+F+D +  + + D +  +V+ AA  +GQ++ MRYL
Sbjct:  559 RMRVCKTCNAAMEAFRTALLLGRAEDAMSAYSTGCVNLDRPYTVFHGELPVHCAAAGGNVGLLSWLVEELGCPIFTDSDKKVPIKDLRSLTVLGAAAVNGQVQAMRYL 666          
BLAST of mRNA_H-elongata_contig83645.15991.1 vs. uniprot
Match: D7FYF5_ECTSI (FYVE-type domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FYF5_ECTSI)

HSP 1 Score: 116 bits (290), Expect = 7.540e-28
Identity = 51/96 (53.12%), Postives = 71/96 (73.96%), Query Frame = 1
Query:   13 KVRICSTCFTAGQAFRSALLEGSEEKALAAYKTGCVNLRAPYTIYHNELPLHCAAAGGNVSLLSWLLEDRCCPMFSDKESTIALGDRKRRSVMAAA 300
            ++R+C TC  A +AFR+ALL G  E A++AY TGCVNL  PYT++H ELP+HCAAAGGNV LLSWL+E+  C +F+D +  + + D +  +V+ AA
Sbjct:  557 RMRVCKTCNAAMEAFRTALLLGRAEDAMSAYSTGCVNLDRPYTVFHGELPVHCAAAGGNVGLLSWLVEELGCSIFTDSDKKVPIRDLRSLTVLGAA 652          
BLAST of mRNA_H-elongata_contig83645.15991.1 vs. uniprot
Match: A0A7S3YF48_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3YF48_HETAK)

HSP 1 Score: 86.3 bits (212), Expect = 1.570e-17
Identity = 49/120 (40.83%), Postives = 67/120 (55.83%), Query Frame = 1
Query:    7 DKKVRICSTCFTAGQAFRSALLEGSEEKALAAYKTGCVNLRAPYTIYHNELPLHCAAAGGNVSLLSWLLEDRCC----------PMFSDKESTIALGDRKRRSVMAAAMGSGQLETMRYL 336
            +KK R+C  C  A + FR+AL  G      AAY TG VNLR PYT++  E P+HCAAAGG++ LL+WL+++R            P+F+    T         S M+ A  +G LE MR+L
Sbjct:  129 EKKARVCRGCQWAMEDFRAALRRGDAPGVRAAYATGVVNLRTPYTVHGGEYPVHCAAAGGSLPLLAWLVDERGAFVRDPQSKQRPLFASDGIT---------SCMSLAAVNGNLEMMRWL 239          
BLAST of mRNA_H-elongata_contig83645.15991.1 vs. uniprot
Match: A0A7S4QY11_9STRA (Hypothetical protein n=2 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4QY11_9STRA)

HSP 1 Score: 80.9 bits (198), Expect = 2.010e-15
Identity = 44/122 (36.07%), Postives = 67/122 (54.92%), Query Frame = 1
Query:    7 DKKVRICSTCFTAGQAFRSALLEGSEEKALAAYKTGCVNLRAPYTIYHNEL--PLHCAAAGGNVSLLSWLLEDRCCPMF----------SDKESTIALGDRKRRSVMAAAMGSGQLETMRYL 336
            +K V++C TC      FR  LL+G  E+A++ + TG +NLR  +     E   P+HCAA GGN+ LL WL++   CP+           S K ST  +   K R+V+  AM + +++ +RYL
Sbjct:  453 EKNVKVCKTCHFLSYKFRQTLLDGHYEEAVSLFHTGNINLRCQFYSTDGEASYPVHCAAEGGNIQLLQWLVDIHFCPIKQAGSGSKGKKSRKASTALIQTSKGRTVLDIAMTNQRVDILRYL 574          
BLAST of mRNA_H-elongata_contig83645.15991.1 vs. uniprot
Match: A0A7S4S024_9STRA (Hypothetical protein n=3 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4S024_9STRA)

HSP 1 Score: 78.6 bits (192), Expect = 1.310e-14
Identity = 44/130 (33.85%), Postives = 66/130 (50.77%), Query Frame = 1
Query:    7 DKKVRICSTCFTAGQAFRSALLEGSEEKALAAYKTGCVNLRAPYTIYHNEL--PLHCAAAGGNVSLLSWLLEDRCCPMF------------------SDKESTIALGDRKRRSVMAAAMGSGQLETMRYL 336
            +K V +C  C     + R AL+ G  ++ LA Y+TG VNLR PY     E   P+HCAA GGN+ +L WL++ RCCP++                  SD      +   + RSV+  A+   +++ +RYL
Sbjct:  551 EKTVNVCKHCDFLAGSMRIALMGGDFDRVLALYETGNVNLRVPYMNVKGETLYPVHCAAMGGNLEVLKWLVDLRCCPIYTYEYRQNNLYNKKYNKKSSDNTGPTPILTSRGRSVLDIALKGPKVDLLRYL 680          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig83645.15991.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 15
Match NameE-valueIdentityDescription
A0A6H5KTC5_9PHAE1.000e-4865.52Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FYF4_ECTSI4.380e-3860.34Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KUU5_9PHAE4.470e-3859.48Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LDM9_ECTSI3.470e-3766.27FYVE-type domain-containing protein n=1 Tax=Ectoca... [more]
A0A836CC14_9STRA3.200e-3654.95FYVE-type domain-containing protein n=1 Tax=Tribon... [more]
A0A6H5KTY3_9PHAE4.170e-3353.70Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FYF5_ECTSI7.540e-2853.13FYVE-type domain-containing protein n=1 Tax=Ectoca... [more]
A0A7S3YF48_HETAK1.570e-1740.83Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A7S4QY11_9STRA2.010e-1536.07Hypothetical protein n=2 Tax=Ditylum brightwellii ... [more]
A0A7S4S024_9STRA1.310e-1433.85Hypothetical protein n=3 Tax=Ditylum brightwellii ... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig83645contigH-elongata_contig83645:75..1999 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score146.0
Seed ortholog evalue1.1e-32
Seed eggNOG ortholog2880.D7FYF4
KEGG koko:K15688
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0007154,GO:0007165,GO:0008150,GO:0009987,GO:0023052,GO:0030587,GO:0032502,GO:0035556,GO:0044424,GO:0044444,GO:0044464,GO:0048856,GO:0050789,GO:0050794,GO:0050896,GO:0051703,GO:0051704,GO:0051716,GO:0065007,GO:0090702,GO:0099120
EggNOG free text desc.negative regulation of chemokine (C-C motif) ligand 5 production
EggNOG OGsKOG1571@1,KOG1571@2759
EC2.3.2.27
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko04121
Hectar predicted targeting categoryother localisation
Exons3
Model size348
Cds size348
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig83645.15991.1prot_H-elongata_contig83645.15991.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig83645 75..1999 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931242.4608898-CDS-H-elongata_contig83645:74..2301622931242.4608898-CDS-H-elongata_contig83645:74..230Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig83645 75..230 +
1691679756.4427722-CDS-H-elongata_contig83645:74..2301691679756.4427722-CDS-H-elongata_contig83645:74..230Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig83645 75..230 +
1622931242.481466-CDS-H-elongata_contig83645:735..8341622931242.481466-CDS-H-elongata_contig83645:735..834Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig83645 736..834 +
1691679756.4553282-CDS-H-elongata_contig83645:735..8341691679756.4553282-CDS-H-elongata_contig83645:735..834Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig83645 736..834 +
1622931242.5079975-CDS-H-elongata_contig83645:1906..19991622931242.5079975-CDS-H-elongata_contig83645:1906..1999Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig83645 1907..1999 +
1691679756.4644706-CDS-H-elongata_contig83645:1906..19991691679756.4644706-CDS-H-elongata_contig83645:1906..1999Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig83645 1907..1999 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig83645.15991.1

>prot_H-elongata_contig83645.15991.1 ID=prot_H-elongata_contig83645.15991.1|Name=mRNA_H-elongata_contig83645.15991.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=116bp
SKDKKVRICSTCFTAGQAFRSALLEGSEEKALAAYKTGCVNLRAPYTIYH
NELPLHCAAAGGNVSLLSWLLEDRCCPMFSDKESTIALGDRKRRSVMAAA
MGSGQLETMRYLAFTE
back to top

mRNA from alignment at H-elongata_contig83645:75..1999+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig83645.15991.1 ID=mRNA_H-elongata_contig83645.15991.1|Name=mRNA_H-elongata_contig83645.15991.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1925bp|location=Sequence derived from alignment at H-elongata_contig83645:75..1999+ (Himanthalia elongata Himel1 dioecious)
AGCAAGGATAAGAAGGTGCGAATCTGCAGCACGTGCTTCACGGCAGGCCA GGCGTTTCGGTCCGCCCTTCTCGAGGGATCCGAGGAGAAGGCCTTGGCGG CATACAAGACGGGCTGTGTCAACCTCCGGGCGCCCTACACCATCTACCAC AACGAGGTATCGGACATCGTGCAGTGTATAGTGTATGCACTTTGATGCCA CCTCGCCGATGGAGTGGGGTCTCAAGGCTCAGAGGGAGTTCCAGTGGTGG GGAATCACTTCTGTAGGGTGGACCGATATTTCTATGACCCCCCCCCCTCC CTCCCTCCCTCCCCTCTCTCTCGTCAAAATCCCCGGTATGGCGTTCGCCA GAGCTCCCAGAAGACTCTCGACCCCTCTCCTTGAGACGAGCGCTTTAGTT CGCAAAAGCTGGAACCCGATCTCATTCTTCCTCTCTTTCTTTTTATCGAT TGACGATAATTTCGTATTAATATTTAGTATACTGCATTTAGTATACTGCA TTTAGTATATTGTACCGCACATATGATAGAAAAAATATTATACGTAGTAT CTTGAAAAACATTAAGAAGATTTTTTTTTAACGGAATTGGATGGGATCGC AATCGAATCGCGATCGTTCCGTGCGACGACGACAACGGTGACAACGACAA CGAGGACACAGCTTCCTTTACACTGCGCGGCCGCCGGTGGCAACGTGAGC CTCCTGTCGTGGCTGCTGGAGGATCGTTGCTGTCCCATGTTCTCCGACAA GGAGAGCACGGTGAGATCGGTACTGTGAGATCAAAACTTTGTGCTCAAAG GTAGTAATCATAATGTACACATTCGAACCGGACGATAGTTGGTCATAGTC ATAGTCCCCTGGATTGCACCCCTAACGTTGCTAAGAAGGCGTGCGTGTGT GGATGTTCGGAGGGCTTGGATGAGAGTTAATACTGTTATTGGTATGTTTT TTTAGGAAAAAAAAAGAAGAGAGAGGAAGCGCGAAATTTCTGCTACCTGC TGTAGAGGACAACGAAGGAGGAGGCGTGGCCAAAATCGACAGAAGGTCGT GCGAGGCACACATATATCCTCGGAGACCTTCTCACTCACGCTTGATATAG ATATGAAGGTGTATAGATATGAAGTGATATAGATATGAAGGGGGGGGGGG GTAGGAGAGAACAAGGCTACCTTCCCGCTGAGGAAAGAGTTTCTGCCCCA GGAGCAAAGTCCCGCCCTATCGCCATGCGTTTATATTTTCTTGAACGGGA TTTCCCTGGTCGGGCAGGACGTGGTATCCCGTAGGAGTACAGTTGTCGAT GTTTGCATGCCTTAGCTGTTAGGCCATTAACCGCACGCACGCGTGTGCTA CTGGACAACGAAGCGTTGTTCCTACATCATAGACCGCCGATAGCCAATAG TCGGTTCTGGGCGAGGGATGTGAACCGGTTCGTAATTGCGGAGCATAGCG TGCGTGCTAATAAGGCGTGTACACGAACTAGAAATATTCGCACAGACCAT GATATCGCACGAGAGACCCTCGCGTCCTAGTAATAACTGGAGATAACCCC CCCCCCCCCCCCCCCCCACCCCCACACAAACCAAACAGAGGGAGGACAAA AAAAAAACCTCAGCNNNNNNNNNNATATCGCCCGAGAAACCCCCGCGTCC CAGTAAAAACCGGAAAAACCCCCCCCCCCCCCCCCAATAGACCCAATAGA CCCAATAGGGGAGAGGAAATAAAGATCCTCTCCGCAACCAGCGACAAGAT ATCTACGATCGTGATAATATTTAGCCCGGGGACGCTTCCCCACCACCCCC TCTCTTCCCATCCCATCGCCTGCTGTACGCAGATAGCGCTGGGGGACAGG AAACGAAGGAGCGTAATGGCGGCGGCCATGGGCAGTGGGCAGCTCGAAAC CATGCGCTACCTTGCCTTCACGGAG
back to top

Coding sequence (CDS) from alignment at H-elongata_contig83645:75..1999+

>mRNA_H-elongata_contig83645.15991.1 ID=mRNA_H-elongata_contig83645.15991.1|Name=mRNA_H-elongata_contig83645.15991.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=696bp|location=Sequence derived from alignment at H-elongata_contig83645:75..1999+ (Himanthalia elongata Himel1 dioecious)
AGCAAGGATAAGAAGGTGCGAATCTGCAGCACGTGCTTCACGGCAGGCCA
GGCGTTTCGGTCCGCCCTTCTCGAGGGATCCGAGGAGAAGGCCTTGGCGG
CATACAAGACGGGCTGTGTCAACCTCCGGGCGCCCTACACCATCTACCAC
AACGAGAGCAAGGATAAGAAGGTGCGAATCTGCAGCACGTGCTTCACGGC
AGGCCAGGCGTTTCGGTCCGCCCTTCTCGAGGGATCCGAGGAGAAGGCCT
TGGCGGCATACAAGACGGGCTGTGTCAACCTCCGGGCGCCCTACACCATC
TACCACAACGAGCTTCCTTTACACTGCGCGGCCGCCGGTGGCAACGTGAG
CCTCCTGTCGTGGCTGCTGGAGGATCGTTGCTGTCCCATGTTCTCCGACA
AGGAGAGCACGCTTCCTTTACACTGCGCGGCCGCCGGTGGCAACGTGAGC
CTCCTGTCGTGGCTGCTGGAGGATCGTTGCTGTCCCATGTTCTCCGACAA
GGAGAGCACGATAGCGCTGGGGGACAGGAAACGAAGGAGCGTAATGGCGG
CGGCCATGGGCAGTGGGCAGCTCGAAACCATGCGCTACCTTGCCTTCACG
GAGATAGCGCTGGGGGACAGGAAACGAAGGAGCGTAATGGCGGCGGCCAT
GGGCAGTGGGCAGCTCGAAACCATGCGCTACCTTGCCTTCACGGAG
back to top