mRNA_H-elongata_contig8364.15989.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig8364.15989.1
Unique NamemRNA_H-elongata_contig8364.15989.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig8364.15989.1 vs. uniprot
Match: A0A6H5KAT0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KAT0_9PHAE)

HSP 1 Score: 263 bits (671), Expect = 1.160e-76
Identity = 143/262 (54.58%), Postives = 173/262 (66.03%), Query Frame = 1
Query:    1 IPSSAL--NKGRQESVRAWEEAADSIESLSMRVSGRRCHSREVPGTTTVGKPGVTFAYSQAEERTQPIGSFFRDATISSSNSIMVVVTLALDTPLLSPLVTAWERGSTEYEAAPDEDIICRIPRNMIGPRVIQRETVASDLNAGTAPGVFILNSAESGAESCPAAKTDITICDMMGKAAVAAAAGREA--DARGLKHSRGWAQVGEQGFRRFCAYRLLEPDMYLQTLAFGVTRRAVLSNIPGVCGRSTFHSEQRCTDQLCRQ 774
            IPS+++  +   Q    AWEEAAD +E LSMRVSGRR HSREVPGT  +GK GVTF Y QA ERT+ + SFFRDA+ SSS+S+MVVV LALDTP L+PLV AWER   E E APDED +  +PR MI P V+  E V SDL    AP   +L  AE   +  P    +    D  G    A    R+A  +   ++H R W +V ++GFRR+  Y+LLEPD Y+QTL FGVT+RA L N   VCGRSTFHSEQRCT+QLCRQ
Sbjct:  950 IPSTSITPDNAEQNLAEAWEEAADRVEPLSMRVSGRRGHSREVPGTCNIGKMGVTFHYPQAPERTRAVASFFRDASKSSSDSVMVVVALALDTPKLTPLVIAWEREPFEPEPAPDEDTLDVVPRVMIPPGVVLEEGVVSDLGGHIAPDAIVLTKAEKKVDFSP---PEALAGDRRGGGGAAVKRSRKAGKEKESVRHRRDWKEVDKKGFRRYAVYQLLEPDGYMQTLGFGVTKRAALPNTAAVCGRSTFHSEQRCTEQLCRQ 1208          
BLAST of mRNA_H-elongata_contig8364.15989.1 vs. uniprot
Match: D8LPV0_ECTSI (Acyl-CoA-binding domain-containing protein 6 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LPV0_ECTSI)

HSP 1 Score: 261 bits (666), Expect = 5.510e-76
Identity = 143/262 (54.58%), Postives = 171/262 (65.27%), Query Frame = 1
Query:    1 IPSSAL--NKGRQESVRAWEEAADSIESLSMRVSGRRCHSREVPGTTTVGKPGVTFAYSQAEERTQPIGSFFRDATISSSNSIMVVVTLALDTPLLSPLVTAWERGSTEYEAAPDEDIICRIPRNMIGPRVIQRETVASDLNAGTAPGVFILNSAESGAESCPAAKTDITICDMMGKAAVAAAAGREA--DARGLKHSRGWAQVGEQGFRRFCAYRLLEPDMYLQTLAFGVTRRAVLSNIPGVCGRSTFHSEQRCTDQLCRQ 774
            IPS+++  +   Q     WEE AD +E LSMRVSGRR HSREVPGT  +GK GVTF Y QA ERT+ + SFFRDA+ SSS+S+MVVV LALDTP L+PLV AWER   E E APDED +  +PR MI P V+  E V SDL    AP   IL  AE   +  P    +    D  G    A    R+A  +   ++H R W +V E+GFRR+  Y+LLEPD Y+QTL FGVT+RA L N   VCGRSTFHSEQRCT+QLCRQ
Sbjct: 1129 IPSTSITPDNAEQSLAETWEEEADRVEPLSMRVSGRRGHSREVPGTCNIGKMGVTFHYPQASERTRAVASFFRDASKSSSDSVMVVVALALDTPKLTPLVIAWEREPFEPEPAPDEDALDVVPRVMIPPGVVLEEGVVSDLGGHIAPDAIILTKAEKKVDFSP---PEALAGDRRGGGGAAVKRSRKARKEQEWVRHRRDWEEVDEKGFRRYAVYQLLEPDGYMQTLGFGVTKRAALPNTAAVCGRSTFHSEQRCTEQLCRQ 1387          
BLAST of mRNA_H-elongata_contig8364.15989.1 vs. uniprot
Match: G5A0P3_PHYSP (Uncharacterized protein n=7 Tax=Phytophthora TaxID=4783 RepID=G5A0P3_PHYSP)

HSP 1 Score: 65.1 bits (157), Expect = 2.880e-8
Identity = 77/274 (28.10%), Postives = 113/274 (41.24%), Query Frame = 1
Query:   64 DSIESLSMRVSGRRCHSRE------VPGTTTVG-KPGVTFAYSQAEE----------RTQPIGSFFRDATISSSNSIMVVVTLALDTPLLSPLVTAWERGSTE---------YEAAPDEDIICRIP-------RNMIGPRVIQRETVASDLNAGTAPGVFILNSAESGAESCPAAKTDITICDMMGKAAVAAAAGREADARGLKHSRGWAQVGEQ-GFRRFCAY---RLLEPDMYLQTLAFGVTRRAVLSNIPGVCGRSTFHSEQRCTDQLCRQ 774
            D    LS+ V GR     +      VPG T VG KP + + Y    E           T+ +  F R++ +SSSNSI+V++ LALD P+LSPL  AW  GS           Y  A  E    R+        R+++  R+   E++  DL  GT   + +LN A    +        +T                E  +  + H RGW++  ++  FR++      R + P   +      VT      N PGVCGR  +H       QLCR+
Sbjct:  463 DPFRPLSLLVCGRWDPENQPNVLDRVPGVTLVGNKPVLWWRYEPDHEVSKEGVPPPEYTKTVALFARNSVLSSSNSILVMLVLALDAPILSPLWFAWHVGSKMPPPELEAAIYTLAESETNFGRVMAFVSPCLRSLLSTRL---ESILDDLLPGT---IALLNDAAQEEDHW----LQLT----------------ELPSAPVGHRRGWSEFTDRHNFRQWFLLTQGRTMSPRYDVVAQYCSVT--TAHPNAPGVCGRYCWHETDPVEMQLCRR 708          
BLAST of mRNA_H-elongata_contig8364.15989.1 vs. uniprot
Match: A0A6G0XYL5_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0XYL5_9STRA)

HSP 1 Score: 61.6 bits (148), Expect = 4.020e-7
Identity = 63/230 (27.39%), Postives = 98/230 (42.61%), Query Frame = 1
Query:   79 LSMRVSGRRCHSREVPGTTTVGKP-GVTFAYSQAEERTQPIGSFFRDATISSSNSIMVVVTLALDTPLLSPLVTAWERGSTEYEAAPDE-DIICRIPRNMIGPRVIQRE-----TVASDLNAGTAPGVFILNSAESGAESCPAAKTDITICDMMGKAAVAAAAGREADARGLKHSRGWAQVGEQGFRRFCAYRLLEPDMYLQTLAFGVTRRAVLSNIPGVCGRSTFHSEQ 747
            LS+   GR     +VPGT  +    G+ + +   EE T+P   + RDA ISS+N+I+ +V LALD+P+ +P V AW  GS     AP E DI+  +P   I PR+         TV S L+      + I N                                         H   +A+V    FR++  +  + P+  +   A+G+ R     N  G+ GR ++HS++
Sbjct:  386 LSILACGRIDFRGKVPGTVVLASHVGLWWCH---EEWTRPTAMYLRDAKISSTNAILALVVLALDSPVKAPTVFAWTPGSV---CAPHELDIV--LPGQWIVPRLCVSRFGVLPTVVSPLDDYLPSAICIPNGCSD-------------------------------------HMPDFAEVNPINFRQWLRWTTVLPNFDVDAKAYGLVRG--YPNQTGLTGRFSWHSDE 568          
BLAST of mRNA_H-elongata_contig8364.15989.1 vs. uniprot
Match: W2PI59_PHYPN (Uncharacterized protein n=11 Tax=Phytophthora TaxID=4783 RepID=W2PI59_PHYPN)

HSP 1 Score: 61.6 bits (148), Expect = 4.110e-7
Identity = 74/274 (27.01%), Postives = 118/274 (43.07%), Query Frame = 1
Query:   64 DSIESLSMRVSGR---RCHS---REVPGTTTVG-KPGVTFAYSQAE--------ERTQPIGSFFRDATISSSNSIMVVVTLALDTPLLSPLVTAWERGS---------TEYEAAPDEDIICRIPR-------NMIGPRVIQRETVASDLNAGTAPGVFILNSAESGAESCPAAKTDITICDMMGKAAVAAAAGREADARGLKHSRGWAQVGEQG-FRRFCAY---RLLEP--DMYLQTLAFGVTRRAVLSNIPGVCGRSTFHSEQRCTDQLCRQ 774
            +S + LS+ + GR     H    + VPG T VG +P + + Y   E        E T+ +  F R++ +SSSN+I+V++ LALDTP+LSPL  AW  GS           Y  A  E    R+         +++  R+   ++V  +L  GT   + +LN A    +        + + D                   + H RGW++  ++  FR++      R + P  D+  Q  +  +       N PGVCGR  +H      D LCR+
Sbjct:  462 NSFQPLSLLICGRWDPENHPNALQRVPGVTLVGNRPVLWWRYDPDEISEEGEPPEYTKTVAMFERNSKLSSSNAIVVMLVLALDTPILSPLWLAWHVGSKMPPPELEAAVYSLAEAETGFGRVMAFVSPCRGSLLSTRL---DSVLDELLPGT---ITLLNDAAQEEDHW------LQLVDHSSSP--------------VGHRRGWSEFSDRHTFRQWLLLTQGRTVTPRYDVVAQYCSVTIAH----PNAPGVCGRYCWHEVDPVEDLLCRR 705          
BLAST of mRNA_H-elongata_contig8364.15989.1 vs. uniprot
Match: A0A067CEL5_SAPPC (Uncharacterized protein n=1 Tax=Saprolegnia parasitica (strain CBS 223.65) TaxID=695850 RepID=A0A067CEL5_SAPPC)

HSP 1 Score: 61.2 bits (147), Expect = 5.410e-7
Identity = 66/237 (27.85%), Postives = 98/237 (41.35%), Query Frame = 1
Query:   76 SLSMRVSGRRCHSREVPGTTTVGK-PGVTFAYSQAEERTQPIGSFFRDATISSSNSIMVVVTLALDTPLLSPLVTAWERGSTEYEAAPDEDII---CRIPRNMIGPRVIQRETVASDLNAGTAPGVFILNSAESGAESCPAAKTDITICDMMGKAAVAAAAGREADARGLKHSRGWAQVGEQGFRRFCAYRLLEPDMYLQTLAFGVTRRAVLSNIPGVCGRSTFHSEQRC-TDQLCR 771
            SLS+   GR  H   VPGT  +   PG+ + +   E  T+P   + RDA +SSS++I+V V LALD+P L+P   AW  GS    AA + +I+     IP   +   ++    V S L+A     V + N  +  A   P                                     +     FR++  Y  + P+  L   AFG+  R    N  G+ GR ++HS+     D L R
Sbjct:  380 SLSVLSCGRMEHLGNVPGTVPLSAFPGLWWCH---EPFTRPAAMYLRDARVSSSDTILVHVVLALDSPRLAPRWFAWVPGSVA--AAIEREILFSFSEIPATTVV--LLSPPHVESPLDAYWPSPVLLANGHDEHAPETP-------------------------------------EFNATRFRQWLRYATIPPNFDLHAKAFGI--RGGYLNRTGLSGRFSWHSDDAVDADDLVR 570          
BLAST of mRNA_H-elongata_contig8364.15989.1 vs. uniprot
Match: A0A0P1AVT9_PLAHL (Acyl-CoA-binding protein n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0P1AVT9_PLAHL)

HSP 1 Score: 60.8 bits (146), Expect = 7.380e-7
Identity = 68/240 (28.33%), Postives = 98/240 (40.83%), Query Frame = 1
Query:  118 EVPGTTTVGK-PGVTFAYS----------QAEERTQPIGSFFRDATISSSNSIMVVVTLALDTPLLSPLVTAW----ERGSTEYEAAPDEDIICRIPRNMIGPRVIQRETVASDLNAGTAPGVFILNSAESGAESCPAAKTDITICDMMGKAAVAAAAGREADARGLKHSRGWAQVGEQ-GFRRFCAYRLLEPDMYLQTLAFGVTRR-----AVLSNIPGVCGRSTFHSEQRCTDQLCRQ 774
            +VPG   VGK P + + Y              E T+ +G F RD  +SSSNSI+V + LALDTP+L+P    W    E    E E   D  II  +P     P+ +    + S L+ G  P    L + ++  E      TDI                       + H RGW +   +  FR++    LL  D    T  + V  +         N+PGVCGR  +H+     + L R+
Sbjct:  464 QVPGVALVGKEPVLWWRYDPDNQGFEVGDSPPEYTKTVGLFKRDNKLSSSNSIVVRLVLALDTPILAPKCFVWHVDSEMPPMEPENVIDNGIIRIVPVTSPCPKTLLSSPLDSILD-GLLPSTITLFNNKAQEEDHWLQLTDI-----------------------VGHRRGWTEFSARHSFRQW----LLLTDESTLTPQYDVDMQHCSITIAHPNVPGVCGRHCWHAIDPIVNFLSRR 675          
BLAST of mRNA_H-elongata_contig8364.15989.1 vs. uniprot
Match: A0A024UTM4_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024UTM4_9STRA)

HSP 1 Score: 58.2 bits (139), Expect = 5.730e-6
Identity = 61/226 (26.99%), Postives = 100/226 (44.25%), Query Frame = 1
Query:   79 LSMRVSGRRCHSREVPGTTTVGK-PGVTFAYSQAEERTQPIGSFFRDATISSSNSIMVVVTLALDTPLLSPLVTAWERGSTEYEAAPDEDIICRIPRN--MIGPRVIQRETVASDLNAGTAPGVFILNSAESGAESCPAAKTDITICDMMGKAAVAAAAGREADARGLKHSRGWAQVGEQGFRRFCAYRLLEPDMYLQTLAFGVTRRAVLSNIPGVCGRSTFHSEQ 747
            LS+   GR  +  +VPGT  +   PG+ +  S  E  T+PI  + R+  +SS+N+I+V V LALD+P+L+P   AW  G+     AP E  I  +  +  ++   V    TV S L+         L S  S A  C  A  D +                              ++ +  FR++  +  + P+  L   A+G+ +    SN  G+ GR ++HS++
Sbjct:  412 LSILACGRIDYRGQVPGTVVLATFPGLWWCISP-ESFTRPIAMYLRNPKLSSTNTILVHVLLALDSPVLAPTWFAWIPGTV---CAPVETEIATMFHHIPLVCGLVESLPTVVSPLDN-------YLPSTISVANGCDEALPDAS------------------------------ELNDLNFRQWIRWTTVRPNFDLDAQAYGIVQG--YSNQTGLNGRFSWHSDE 594          
BLAST of mRNA_H-elongata_contig8364.15989.1 vs. uniprot
Match: A0A329SV37_9STRA (Uncharacterized protein n=1 Tax=Phytophthora cactorum TaxID=29920 RepID=A0A329SV37_9STRA)

HSP 1 Score: 57.4 bits (137), Expect = 1.050e-5
Identity = 78/277 (28.16%), Postives = 118/277 (42.60%), Query Frame = 1
Query:   67 SIESLSMRVSGR---RCHS---REVPGTTTVG-KPGVTFAYS-------QAE---ERTQPIGSFFRDATISSSNSIMVVVTLALDTPLLSPLVTAWERGST----EYEAAPDEDIICRIPRNMIG-PRVI-------------QRETVASDLNAGTAPGVFILNSAESGAESCPAAKTDITICDMMGKAAVAAAAGREADARGLKHSRGWAQVGEQG-FRRFCAY---RLLEP--DMYLQTLAFGVTRRAVLSNIPGVCGRSTFHSEQRCTDQLCRQ 774
            S + LS+ + GR     H    + VPG T VG KP + + Y        Q E   E T+ +  F R++ +SSSN+I+V++ LALD P+LSPL  AW  GS     E EAA     +C +     G  RV+             + E+V   L  GT   + +LN A    +        + + D+                  + H RGW++  ++  FR++      R + P  D+  Q  +  +       N PGVCGR  +H        LCR+
Sbjct:  454 SFQPLSLLICGRWDPESHPTVLQRVPGVTLVGSKPVLWWRYDPDHEVSEQGEPPPESTKTVALFERNSKLSSSNAILVMLVLALDAPVLSPLWFAWHVGSKMPPPELEAA-----VCSLAEAETGFGRVMAFVSPCLSSLLSTRLESVLDGLLPGT---ITLLNDAAQEEDHW------LQLVDLPSSP--------------VGHRRGWSEFTDRHTFRQWFLLTQGRTMLPRYDVVAQYCSVTIAH----PNAPGVCGRYCWHEVDPVEKFLCRR 698          
BLAST of mRNA_H-elongata_contig8364.15989.1 vs. uniprot
Match: H3GZC2_PHYRM (Uncharacterized protein n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3GZC2_PHYRM)

HSP 1 Score: 54.7 bits (130), Expect = 8.370e-5
Identity = 77/280 (27.50%), Postives = 119/280 (42.50%), Query Frame = 1
Query:   43 RAWEEAADSIESLSMRVSGRRCHSRE------VPGTTTVGK-PGVTFAY------SQAEER----TQPIGSFFRDATISSSNSIMVVVTLALDTPLLSPLVTAWERGS---------TEYEAAPDEDIICRIPRNM---IGPRVIQR-ETVASDLNAGTAPGVFILNSAESGAESCPAAKTDITICDMMGKAAVAAAAGREADARGLKHSRGWAQVGEQG-FRRFCAY---RLLEP--DMYLQTLAFGVTRRAVLSNIPGVCGRSTFHSEQRCTDQLCRQ 774
            +A    A +   LS+ V GR    R       VPG T VG  P + + Y      S+ +E     T+ +  F R++ +SSSN+I+V++ LALD P+LSP+  AW  GS           Y  A  E    R+   +   +G  +  R E++  DL  GT   + + N           A+ +    D+   A   +A G         H RGW++  ++  FR++      R + P  D+  Q  +  +       N PGVCGR  +H        LCR+
Sbjct:  821 KAPSRRATAFRPLSLLVCGRWDPERHPTALERVPGVTLVGNGPALWWRYEPDYEVSEGDEAPPEYTKAVALFERNSALSSSNAILVMLVLALDAPILSPMWFAWHVGSKMPPPELEAAVYSLAEAETGFGRVMAFVSPCLGSLLSTRLESILDDLLPGT---ITLFNDV---------AQEEDHWLDL---AEPPSAVG---------HRRGWSEFTDRHTFRQWLLLTEGRTMAPRYDVVAQYCSVTIAH----PNAPGVCGRYCWHEIDPVEMHLCRR 1072          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig8364.15989.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 10
Match NameE-valueIdentityDescription
A0A6H5KAT0_9PHAE1.160e-7654.58Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LPV0_ECTSI5.510e-7654.58Acyl-CoA-binding domain-containing protein 6 n=1 T... [more]
G5A0P3_PHYSP2.880e-828.10Uncharacterized protein n=7 Tax=Phytophthora TaxID... [more]
A0A6G0XYL5_9STRA4.020e-727.39Uncharacterized protein n=1 Tax=Aphanomyces euteic... [more]
W2PI59_PHYPN4.110e-727.01Uncharacterized protein n=11 Tax=Phytophthora TaxI... [more]
A0A067CEL5_SAPPC5.410e-727.85Uncharacterized protein n=1 Tax=Saprolegnia parasi... [more]
A0A0P1AVT9_PLAHL7.380e-728.33Acyl-CoA-binding protein n=1 Tax=Plasmopara halste... [more]
A0A024UTM4_9STRA5.730e-626.99Uncharacterized protein n=1 Tax=Aphanomyces invada... [more]
A0A329SV37_9STRA1.050e-528.16Uncharacterized protein n=1 Tax=Phytophthora cacto... [more]
H3GZC2_PHYRM8.370e-527.50Uncharacterized protein n=1 Tax=Phytophthora ramor... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig8364contigH-elongata_contig8364:6019..9776 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score264.2
Seed ortholog evalue6.3e-68
Seed eggNOG ortholog2880.D8LPV0
EggNOG free text desc.Ankyrin repeats (many copies)
EggNOG OGs2CZ08@1,2S7JB@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons5
Model size783
Cds size783
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig8364.15989.1prot_H-elongata_contig8364.15989.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig8364 6019..9776 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931242.2426896-CDS-H-elongata_contig8364:6018..61811622931242.2426896-CDS-H-elongata_contig8364:6018..6181Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig8364 6019..6181 -
1691679756.3601048-CDS-H-elongata_contig8364:6018..61811691679756.3601048-CDS-H-elongata_contig8364:6018..6181Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig8364 6019..6181 -
1622931242.2622838-CDS-H-elongata_contig8364:7351..76291622931242.2622838-CDS-H-elongata_contig8364:7351..7629Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig8364 7352..7629 -
1691679756.374268-CDS-H-elongata_contig8364:7351..76291691679756.374268-CDS-H-elongata_contig8364:7351..7629Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig8364 7352..7629 -
1622931242.2901711-CDS-H-elongata_contig8364:8181..83491622931242.2901711-CDS-H-elongata_contig8364:8181..8349Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig8364 8182..8349 -
1691679756.3830516-CDS-H-elongata_contig8364:8181..83491691679756.3830516-CDS-H-elongata_contig8364:8181..8349Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig8364 8182..8349 -
1622931242.3117902-CDS-H-elongata_contig8364:8675..87811622931242.3117902-CDS-H-elongata_contig8364:8675..8781Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig8364 8676..8781 -
1691679756.3944693-CDS-H-elongata_contig8364:8675..87811691679756.3944693-CDS-H-elongata_contig8364:8675..8781Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig8364 8676..8781 -
1622931242.3336716-CDS-H-elongata_contig8364:9708..97761622931242.3336716-CDS-H-elongata_contig8364:9708..9776Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig8364 9709..9776 -
1691679756.409438-CDS-H-elongata_contig8364:9708..97761691679756.409438-CDS-H-elongata_contig8364:9708..9776Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig8364 9709..9776 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig8364.15989.1

>prot_H-elongata_contig8364.15989.1 ID=prot_H-elongata_contig8364.15989.1|Name=mRNA_H-elongata_contig8364.15989.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=261bp
IPSSALNKGRQESVRAWEEAADSIESLSMRVSGRRCHSREVPGTTTVGKP
GVTFAYSQAEERTQPIGSFFRDATISSSNSIMVVVTLALDTPLLSPLVTA
WERGSTEYEAAPDEDIICRIPRNMIGPRVIQRETVASDLNAGTAPGVFIL
NSAESGAESCPAAKTDITICDMMGKAAVAAAAGREADARGLKHSRGWAQV
GEQGFRRFCAYRLLEPDMYLQTLAFGVTRRAVLSNIPGVCGRSTFHSEQR
CTDQLCRQAR*
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mRNA from alignment at H-elongata_contig8364:6019..9776-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig8364.15989.1 ID=mRNA_H-elongata_contig8364.15989.1|Name=mRNA_H-elongata_contig8364.15989.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=3758bp|location=Sequence derived from alignment at H-elongata_contig8364:6019..9776- (Himanthalia elongata Himel1 dioecious)
ATCCCCAGCTCGGCGCTCAACAAAGGCCGCCAAGAGAGCGTGCGAGCGTG GGAGGAAGCCGCCGATAGGTGAGATTCAAGCAGCCAACATAAATTTCGGA CCTTTGTATACGTTACTTCACATGCAACACACCGGGTTGCGCTGGGGACA ACACCATTCATTAATATCAAGAAATATTCCCGAATCTTTCTGCACTTCCT TCCTCCTCTCGCGTTGGCTTTTGTTGCATGGACCTGTAAAATTGCTATTT ATAGGACATGCTCAAGTTTATACATGGTGTCCTTTGAGCTCAGAGTTCTC GGTCGAAGAATCTTGTCTCTCTCCAAAGGGGTGAAACGCAACACATGTTA TATTACGCTTGCTGGGCAATAAATATATTTCACTTCCAAGCAACCATAGG CTTACGAGAGTACTCCTTCGGTAGTATTCATGCGCAAATTATAGCCTGAG TGAATCATATATATATATATATATATAGAGAGAGAGAGAGAGAGAGAGAG ACCGACGTGTATGTGGTGTGTGTGCGGCGCCTATGCGTTCGCGCGGAGGT CAAAGTGTCTTTGCGGTACTTGGAGTATAGTATATAGTCTATAGTATAGT ATGGTATAGTAATAGTACAGTATATTAATAGTATGACATAGTACTGTATA GTATATACTGTTGTATATTATAGTATAGTACAGTATAGTATATTATATTA TATTATATTATATTATAGTATAGTATAGTATAGTTGACCCGCCGAATGTA CAATATTTGCTTACCCGGTGTGCCTAATTAACACATGGCATATATGTCCG GTTCGGCGTAGCAAACGGAAAGATATGGCCCTTGTGAAACGTAGTCTCCG GCCTGGCTTTGTTGGAATGCGTGGTCTACACCCGTTAGGATACGAACTCC GTTCAACATAACTACACCTCACCCCACGGGCATTCCCGACATCATGTCGA AACTGTTGCTTATCCCCCTTGACGACACCCACCCTCGGCGGCAAGTATCG AGTCTCTGTCTATGCGAGTGTCCGGGAGGCGATGCCATTCGCGAGAAGTG CCCGGTACCACCACCGTCGGGAAGCCGGGTGTAACATTCGCCTATTCGCA GGTAGTAGTCACGCAGCGAGCGACATGGTTACATAGTTGTCTCAGAACAC ATCGAGAACGTTTTGTTTATTTGTATAAGTAGCCCCTAGGGATATCCCAC AGCGGGCCAAGTTGCAGGCTCCCATAATCCTAGCAATTGTTGCTCAAACT GAACTTTGACCCAACTTGCTAGGCGTGCTTTACAAGGCCCGCTCCGCAGT GCATGTCGTTTCTTAGTTTCCACTAGCAGCGTCGTCGATGTGACCACACC TAAACACATTTAACCATATAATCCTTCTCTCTTCCTAAACCTTACTCCTT AGTTTCTACTCCCTTCTGGCCCTTTAGGCCGAAGAACGGACGCAACCGAT AGGGTCGTTTTTTCGTGACGCGACTATATCTTCGAGCAACTCGATCATGG TGGTCGTTACCCTAGCCTTGGACACTCCACTGTTGAGTCCCTTGGTGACC GCGTGGGAAAGAGGATCCACAGAGTATGAAGCGGCTCCTGACGAGGTGCG AAATATATTCGATATAGAGGCAAATAATTGTGTGCAGTTCGTATATGTAC ACACCACGGCTACATGATTTGGGCATAACGCCAGCAGTAGCTTTGAAGGA AGGGGGTGCATTGTTCGCACCACAAAGGCGGGGTTTCGGCGAGAGTTATA ACGAAGCCTTCAACGAACAAGACCAAGGCAATAGTGATGTCGACATGAAA CCTACTATTATAGTAGTAGTAGCACCTCGAGGATAAGTTCTTTTGCGTCT CGTGCCTATCAACTCAGGCTTATTCCATCGATAGTCTAGCAGCCCAAGTC ATGTCGAATTCCGGAAGCAGCAAACGTTAAGGCGTGCGCTCCCCACTTCC GTGGCAATCAACGATCATTAATAGCGTAATGAATATATCGCTCGACGGTA TGCCTACTACGTGTGGCTCACTTGGCACACACCGTTACACCTAGGTGCAT TTATTGCAGGTGCGTACGAACGACCGACCGTGGCCTAAATAAATAACAAC AGTGGTAAGTTTACGGAACTTTAACAAACACCGCACCCCGGCAGCAGGAT ATCATCTGCCGCATTCCACGGAATATGATCGGTCCACGAGTAATACAACG GGAAACGGTCGCTTCAGACCTCAATGCCGGGACGGCTCCGGGTGTTTTCA TCTTGAACAGCGCCGAGAGTGGCGCGGAATCCTGTCCTGCGGCGAAGACG GACATAACCATATGCGATATGATGGGGAAGGCGGCCGTCGCAGCAGCAGC TGGGCGAGAAGCGGATGCACGGGGGCTAAAGCACTCGAGGGGCTGGGCTC AAGTGGGCGAGCAAGGGTTCAGAAGGTGGGTAGACGATCGAGGGCATTCC CCGACGACGTTTAATTTTGTAGCACTTTTCTGTATCGGGAGTGATGAATT TTATACACCTAAGGCCGTCTGTTTCCGTGCTATGCTACAATCAGAAACTA CTATCAATATCGAAAAAAGGCAGATAATAGCATAATCGAATAAATAGCGT GGATTCTTATCGGCCGCGGTCCCCGCTATGGAGGTGACTGCAGGGAGGGT AGCTTTGGGTTATGAAACCGGGGCGTCACGTGGTCCAGTTTCTTCAGTAC TATTTTAATCCCTTCGTAGCTTAGATAGTATGCTTCTAGAAAGGAATTGA CCGGTACATTTTTGTAAGAGCTATAACCCAACATTAATTGAGATATATCA TGCTCTCAACGAAGTTTACGCAAAACCGACGTATCTACTTAATTTCAGAA CCTTAACCTAAACATTTAACCCCTATGGAACTCGATCTGTTTTTTATATA CTAAATTCAATATAAAACTTGAAATCCAGTTCCGGAAGGGTTAAAGAGTA CCGTAATCAGCTTACGTCGACTGATAAATACTAGCAGCATATACTTCAGT ATTATTTTGTTTGACCCTAATAGCCTTTCAACCCTCCTTAGTTAAATATC ATCTAGAAGGGAGAATATAACTATCGCTTAAACCTCTATCATCCTACCTT ATATAATACTTTAAGTAATGCCACTTATTCCCCTTTCCCCGCCCATCGTC TTCTAACCCTTATAATCATATATATTATACAAACATCTCTACCGGGCCTT ACCAACATATCTAATTTGCCTCTGCCTAACAACACAAAAAAAATAACCCC AATCAAAAGTCCCTTCTTCTTTACATTCCACTCTCTAAGCTCTGGTTTAG CCTCCCCACATGAATAATATAGGTGTACGGGATAATAGTGGACTCCTCCC AGACATGGCATTATACCGTTGGCCTGATGAGCTTACTGTTGGGGAGCATG ATTAATGACGTGTGACGATCTTGTGCTCAGAGGTAATAATGTACAAATAC ATTCGAACCTGACGATAGTTGGTACCCTGGACTGTACCTCTCACGGTGCT AAAACGGCGTGGATATTCGGAGGGTTTGCATGAGTTTATAATACGTGTTT AATGAAAAACAAGAGTGACCAGAGCTTTAATTTTATTACTTCAAGGTTCT GTGCCTATCGGCTGTTGGAGCCGGACATGTACCTGCAAACGCTGGCGTTC GGCGTGACCAGGCGAGCGGTTCTCTCAAACATCCCGGGGGTGTGCGGCCG GAGCACGTTCCATTCCGAGCAACGCTGTACGGATCAGCTCTGTCGACAGG CAAGATAA
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Coding sequence (CDS) from alignment at H-elongata_contig8364:6019..9776-

>mRNA_H-elongata_contig8364.15989.1 ID=mRNA_H-elongata_contig8364.15989.1|Name=mRNA_H-elongata_contig8364.15989.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1566bp|location=Sequence derived from alignment at H-elongata_contig8364:6019..9776- (Himanthalia elongata Himel1 dioecious)
ATCCCCAGCTCGGCGCTCAACAAAGGCCGCCAAGAGAGCGTGCGAGCGTG
GGAGGAAGCCGCCGATAGATCCCCAGCTCGGCGCTCAACAAAGGCCGCCA
AGAGAGCGTGCGAGCGTGGGAGGAAGCCGCCGATAGTATCGAGTCTCTGT
CTATGCGAGTGTCCGGGAGGCGATGCCATTCGCGAGAAGTGCCCGGTACC
ACCACCGTCGGGAAGCCGGGTGTAACATTCGCCTATTCGCAGTATCGAGT
CTCTGTCTATGCGAGTGTCCGGGAGGCGATGCCATTCGCGAGAAGTGCCC
GGTACCACCACCGTCGGGAAGCCGGGTGTAACATTCGCCTATTCGCAGGC
CGAAGAACGGACGCAACCGATAGGGTCGTTTTTTCGTGACGCGACTATAT
CTTCGAGCAACTCGATCATGGTGGTCGTTACCCTAGCCTTGGACACTCCA
CTGTTGAGTCCCTTGGTGACCGCGTGGGAAAGAGGATCCACAGAGTATGA
AGCGGCTCCTGACGAGGCCGAAGAACGGACGCAACCGATAGGGTCGTTTT
TTCGTGACGCGACTATATCTTCGAGCAACTCGATCATGGTGGTCGTTACC
CTAGCCTTGGACACTCCACTGTTGAGTCCCTTGGTGACCGCGTGGGAAAG
AGGATCCACAGAGTATGAAGCGGCTCCTGACGAGGATATCATCTGCCGCA
TTCCACGGAATATGATCGGTCCACGAGTAATACAACGGGAAACGGTCGCT
TCAGACCTCAATGCCGGGACGGCTCCGGGTGTTTTCATCTTGAACAGCGC
CGAGAGTGGCGCGGAATCCTGTCCTGCGGCGAAGACGGACATAACCATAT
GCGATATGATGGGGAAGGCGGCCGTCGCAGCAGCAGCTGGGCGAGAAGCG
GATGCACGGGGGCTAAAGCACTCGAGGGGCTGGGCTCAAGTGGGCGAGCA
AGGGTTCAGAAGGATATCATCTGCCGCATTCCACGGAATATGATCGGTCC
ACGAGTAATACAACGGGAAACGGTCGCTTCAGACCTCAATGCCGGGACGG
CTCCGGGTGTTTTCATCTTGAACAGCGCCGAGAGTGGCGCGGAATCCTGT
CCTGCGGCGAAGACGGACATAACCATATGCGATATGATGGGGAAGGCGGC
CGTCGCAGCAGCAGCTGGGCGAGAAGCGGATGCACGGGGGCTAAAGCACT
CGAGGGGCTGGGCTCAAGTGGGCGAGCAAGGGTTCAGAAGGTTCTGTGCC
TATCGGCTGTTGGAGCCGGACATGTACCTGCAAACGCTGGCGTTCGGCGT
GACCAGGCGAGCGGTTCTCTCAAACATCCCGGGGGTGTGCGGCCGGAGCA
CGTTCCATTCCGAGCAACGCTGTACGGATCAGCTCTGTCGACAGGCAAGA
TAAGTTCTGTGCCTATCGGCTGTTGGAGCCGGACATGTACCTGCAAACGC
TGGCGTTCGGCGTGACCAGGCGAGCGGTTCTCTCAAACATCCCGGGGGTG
TGCGGCCGGAGCACGTTCCATTCCGAGCAACGCTGTACGGATCAGCTCTG
TCGACAGGCAAGATAA
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