mRNA_H-elongata_contig8364.15988.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig8364.15988.1
Unique NamemRNA_H-elongata_contig8364.15988.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
[Close]
BLAST of mRNA_H-elongata_contig8364.15988.1 vs. uniprot
Match: D8LPV0_ECTSI (Acyl-CoA-binding domain-containing protein 6 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LPV0_ECTSI)

HSP 1 Score: 329 bits (843), Expect = 1.340e-98
Identity = 193/344 (56.10%), Postives = 229/344 (66.57%), Query Frame = 1 
Query:    1 RTAKDYAYISVNGCHRGMGDSGSYTVSCTHERMKALTRTGLERYNAEMARIALEQELHAKAVALQAKVDIGKAQLAKRREREDAVARSLARKAENRRLKSSTGASRSRRKWELRMQDSRVLETRGEWEQRRDGGGSVFYHCFSKDSLVEPFSWDHPEFWEEAVVNAAVAETVSSVENVSGAVGDGQPNGEL-------------SSLRAVGVAQNPNVEDSSNMTSSRALLAA-RTYTDEEKVSMAVTRLAENERLLGALAWRLGIPLRDVRRDGREPRLARDSNAQSEEIDKNRGQIELEDFDDMSDGEGERGDASEPPGVLPQDHSDVRRINLAERRRRKEV 990
            RTAKDYAY+S N  HRG  D GSY+VSC HERM AL RTGLERYNAEMAR+A+E+E  AK  ALQAKV+IGKA+LA RR REDA  RSLARK + + LK S GA RSR KWELRMQDS ++ETRG WEQR+D GGSVFY C S++ L EPFSWD PE W E+  +    E  ++                              SSLR +G   + +    +N        A  R  T+EE++S+AVTRLA NE+LL ALAWRLGIPL DVR DGREP LARD     EE+D+NR QIEL + DD SD EGERGD  E PG LPQDH+D+RR+ +AERRR+ + 
Sbjct: 1388 RTAKDYAYVSANDQHRGPSDPGSYSVSCKHERMAALLRTGLERYNAEMARVAVERERQAKDAALQAKVEIGKARLADRRAREDAATRSLARKTDAQHLKISAGADRSRHKWELRMQDSHIVETRGSWEQRKDLGGSVFYFCKSEEGLPEPFSWDPPECWGESDPSVLALEGAAAAXXXXXXXXXXXXXXXXXXXXXXXXAEQLSSSLRTLGFDPDQSGGGYTNNGGGHDGDATPRQLTEEEQLSLAVTRLAGNEKLLEALAWRLGIPLADVRPDGREPPLARDDQEDEEELDENREQIELGEHDDASDSEGERGDTRESPGPLPQDHTDLRRMRVAERRRKAQA 1731
[Close]
BLAST of mRNA_H-elongata_contig8364.15988.1 vs. uniprot
Match: A0A6H5KAT0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KAT0_9PHAE)

HSP 1 Score: 318 bits (815), Expect = 6.930e-95
Identity = 190/339 (56.05%), Postives = 225/339 (66.37%), Query Frame = 1 
Query:    1 RTAKDYAYISVNGCHRGMGDSGSYTVSCTHERMKALTRTGLERYNAEMARIALEQELHAKAVALQAKVDIGKAQLAKRREREDAVARSLARKAENRRLKSSTGASRSRRKWELRMQDSRVLETRGEWEQRRDGGGSVFYHCFSKDSLVEPFSWDHPEFWEEAVVNAAVAETVSSVENVSGAVGDGQPNGELSSLRAVGVAQNPNVEDSSNMTSSRAL---------LAARTYTDEEKVSMAVTRLAENERLLGALAWRLGIPLRDVRRDGREPRLARDSNAQSEEIDKNRGQIELEDFDDMSDGEGERGDASEPPGVLPQDHSDVRRINLAERRRRKEV 990
            RTAKDYAY+S N  HRG  D GSY+VSC HERM AL RTGLERYNAEMAR+A+E+E  AK  ALQAKV+IGKA+LA RR REDA  RSLARK + + LK S GA RSR KWELRMQDS V+E+RG WEQR+D GGSVFY C S++ L EPF WD   F+    V       ++S   + G    G           +GV  +P V   SN                   R  T+EE++S+AVTRLA NE+LL ALAWRLGIPL DVR DGREP LARD     EE+D+NR QIEL + DD SD EGE+GD  E PG LPQDH+D+RR+ +AERRR+ + 
Sbjct: 1209 RTAKDYAYVSANDQHRGPSDPGSYSVSCKHERMAALLRTGLERYNAEMARVAVERERQAKDAALQAKVEIGKAKLADRRAREDAATRSLARKTDAQHLKISAGADRSRHKWELRMQDSHVVESRGPWEQRKDLGGSVFYFCKSEEGLPEPFRWD---FYIRTCV-------IASTSVLCGRDRTG-----------LGVVLHPKVLSRSNCGGGGYTNNGGGHVGDATPRQLTEEEQLSLAVTRLAGNEKLLEALAWRLGIPLADVRPDGREPPLARDDQEDEEELDENREQIELGEHDDASDSEGEQGDTRESPGPLPQDHADLRRMRVAERRRKAQA 1526
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig8364.15988.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LPV0_ECTSI1.340e-9856.10Acyl-CoA-binding domain-containing protein 6 n=1 T... [more]
A0A6H5KAT0_9PHAE6.930e-9556.05Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig8364contigH-elongata_contig8364:1850..4793 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score339.3
Seed ortholog evalue2e-90
Seed eggNOG ortholog2880.D8LPV0
EggNOG free text desc.Ankyrin repeats (many copies)
EggNOG OGs2CZ08@1,2S7JB@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionAcyl-CoA-binding domain-containing protein 6
Ec32 orthologEc-18_002580.1
Exons7
Model size996
Cds size996
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931241.9483876-CDS-H-elongata_contig8364:1849..19901622931241.9483876-CDS-H-elongata_contig8364:1849..1990Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig8364 1850..1990 -
1691679756.2940762-CDS-H-elongata_contig8364:1849..19901691679756.2940762-CDS-H-elongata_contig8364:1849..1990Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig8364 1850..1990 -
1622931241.9804-CDS-H-elongata_contig8364:2345..23781622931241.9804-CDS-H-elongata_contig8364:2345..2378Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig8364 2346..2378 -
1691679756.3031797-CDS-H-elongata_contig8364:2345..23781691679756.3031797-CDS-H-elongata_contig8364:2345..2378Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig8364 2346..2378 -
1622931242.0557883-CDS-H-elongata_contig8364:2438..26821622931242.0557883-CDS-H-elongata_contig8364:2438..2682Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig8364 2439..2682 -
1691679756.3109605-CDS-H-elongata_contig8364:2438..26821691679756.3109605-CDS-H-elongata_contig8364:2438..2682Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig8364 2439..2682 -
1622931242.1258917-CDS-H-elongata_contig8364:3150..32731622931242.1258917-CDS-H-elongata_contig8364:3150..3273Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig8364 3151..3273 -
1691679756.3186598-CDS-H-elongata_contig8364:3150..32731691679756.3186598-CDS-H-elongata_contig8364:3150..3273Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig8364 3151..3273 -
1622931242.1466498-CDS-H-elongata_contig8364:3631..38101622931242.1466498-CDS-H-elongata_contig8364:3631..3810Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig8364 3632..3810 -
1691679756.3267143-CDS-H-elongata_contig8364:3631..38101691679756.3267143-CDS-H-elongata_contig8364:3631..3810Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig8364 3632..3810 -
1622931242.1679552-CDS-H-elongata_contig8364:4097..41781622931242.1679552-CDS-H-elongata_contig8364:4097..4178Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig8364 4098..4178 -
1691679756.3394156-CDS-H-elongata_contig8364:4097..41781691679756.3394156-CDS-H-elongata_contig8364:4097..4178Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig8364 4098..4178 -
1622931242.1912136-CDS-H-elongata_contig8364:4598..47931622931242.1912136-CDS-H-elongata_contig8364:4598..4793Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig8364 4599..4793 -
1691679756.3496974-CDS-H-elongata_contig8364:4598..47931691679756.3496974-CDS-H-elongata_contig8364:4598..4793Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig8364 4599..4793 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig8364.15988.1prot_H-elongata_contig8364.15988.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig8364 1850..4793 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig8364.15988.1

>prot_H-elongata_contig8364.15988.1 ID=prot_H-elongata_contig8364.15988.1|Name=mRNA_H-elongata_contig8364.15988.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=332bp
RTAKDYAYISVNGCHRGMGDSGSYTVSCTHERMKALTRTGLERYNAEMAR
IALEQELHAKAVALQAKVDIGKAQLAKRREREDAVARSLARKAENRRLKS
STGASRSRRKWELRMQDSRVLETRGEWEQRRDGGGSVFYHCFSKDSLVEP
FSWDHPEFWEEAVVNAAVAETVSSVENVSGAVGDGQPNGELSSLRAVGVA
QNPNVEDSSNMTSSRALLAARTYTDEEKVSMAVTRLAENERLLGALAWRL
GIPLRDVRRDGREPRLARDSNAQSEEIDKNRGQIELEDFDDMSDGEGERG
DASEPPGVLPQDHSDVRRINLAERRRRKEVL*
back to top

mRNA from alignment at H-elongata_contig8364:1850..4793-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig8364.15988.1 ID=mRNA_H-elongata_contig8364.15988.1|Name=mRNA_H-elongata_contig8364.15988.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=2944bp|location=Sequence derived from alignment at H-elongata_contig8364:1850..4793- (Himanthalia elongata Himel1 dioecious)
CGAACGGCGAAAGACTACGCCTATATTTCCGTAAACGGCTGCCATCGAGG
CATGGGCGATTCTGGGAGTTACACGGTGTCTTGCACACACGAGCGGATGA
AAGCACTGACGCGCACGGGCCTTGAGCGCTACAACGCCGAGATGGCCAGG
ATAGCGCTGGAGCAGGAACTTCACGCGAAAGCCGTTGCGCTGCAGGTAAA
ACCAATTACACGGTTTACTCGGGTCGAAAGCGGCCGTCGTAGTGATATGG
GGGTCGAGGTTGAATCACGCGGTGTATGCGGTGGTTCGTTTGTGCTTGTT
TTTGACGATCTTGTGCGCGTACCTGCGACCCGACTCCACATCCGTTTATG
CATGCATGTGAACCAGGCGTGAAAAAAAGCACGGAATCAAATTCTTCGTC
GAGTGCATGATAATTGGGGACACAACCGAGAAAATGTAGGGTTTATCATC
TATATTTTGGCACCACGTGTAATGTATGCGTGCGTGTGTTGTTGTTTTAA
TTGGTTTGTTCCCGGTCGCAATCCATCGCCATAGTGTTTCTAGACCTGAT
TCATCACCAGCTTGCCCTTAGTATTCGCGGATAAGCACCGAACTATCTTT
TTCTGCCTACAAAAGGCCAAAGTGGACATCGGGAAGGCACAACTTGCTAA
GCGGCGCGAAAGGGAGGACGCCGTGGCTCGCTCGCTAGCTAGAAAGGTGC
GAATACCGTTGCCATATGCAAACAGTTGAGGATTCAAAGAGTGATTCACT
ACCGATGTGGGTCATCGGGTTGAGTTCCTCCCCTTGTCGCCTCGAATTCC
CGCGTGAATGCAAAAATGTTCGCTGTGAAATAGTCAATCCTAGCCCTCAC
CCTTTTGCTCGAGAGGATCATCACCACGTACGCTGCCAAGCCTATTCCTT
CTCGTGTTGCTCATATATCCGCGAGCAGTATAGTATAATCTCCAATGAAT
GCTCCACGACGTTTGCGAGTCATCTTTTTACAGGCGGAAAATCGACGTCT
CAAATCTTCGACTGGTGCGTCTCGAAGCCGCCGCAAGTGGGAGCTGAGAA
TGCAGGATTCACGCGTCCTGGAGACCCGGGGTGAATGGGAGCAACGACGG
GATGGCGGAGGAAGCGTGTTCTACCACTGCTTTTCAAAGGACTCCCTAGT
AGAGCCGTTCAGGTTTTACGGGAAAACGCCTCCATAATAAATTTAACACC
AGATACACTGAGTCGGAACATAGTAACGACTCGTTCTTTGCTCGATATTT
TCGCCTTACAAATGATCGTCATAGGGCACATTCCTGATGCAAATCTTCAG
GGAAAACTCAGGAAAAGAGCGCCCCCCACCCCCCCGTAGCATTTCCCAGG
GCTGCTTGCTCTGGAGTATCAGTGGCGGAACACGATCATTACTAGATTTG
CTGCTCTGCATTTAATTTTGGAAATATTTGCCACCTGTATGCCAATCGCG
TCCGATCGCATGCAGGACAGTTGATTAGAATATTATTCCGTCTATTTTGT
CTTTTCTTTTTAATTTATAGCTGGGATCATCCCGAATTTTGGGAGGAAGC
CGTCGTCAACGCTGCAGTGGCAGAGACTGTGAGCTCTGTTGAGAACGTTT
CTGGTGCAGTTGGTGATGGACAACCAAACGGTGAACTCTCGAGGTACCGA
TTCTCTTTTGTCTTGAGGATTATTGCGGAGAGATTGGCGGAGATACCCAA
CCCTTATTCGGTACAGCGGCGTGCCCCCCCCCACCGCCCGCCCCACGGAT
GGCTGCGCCTTATGGGATTTCTGTACGTTATAGATATATCCATAAATTTA
TAAATACACAAAAACTCTCACGATGCCAAGAAGGAGTAGCACGACGCAAT
GGAAATAAATTATGTGAAAAGCAGGACGAGCGAGTCCACAAGTAACACAG
CACGTAGCCATTCATGACCTTAATAAGCAAGTAGAGACAGCAAGCGCACA
ATATAAAACTCTCGTAAGATATTAACTCTCTCCATATATATACACACACA
GTATCTATCCGACATACTGTATCTGAATGAATATTGCGAGTGCGGGAGGT
CCCTTCCCGTTCAGCACCTCGAGTCGTTCATCCCTTGTCTCCCTTCGCGC
AAACCATTCAGTCTCCGTGCCGTCGGAGTGGCTCAAAACCCGAACGTCGA
AGACTCCTCCAACATGACATCATCCAGAGCACTTCTCGCCGCACGGACCT
ACACAGATGAAGAAAAGGTATCAATGGCGGTGACTCGCCTTGCCGAGAAC
GAGAGGCTCTTGGGAGCCCTGGCCTGGCGGCTTGGGATACCATTGCGTGA
CGTTCGGCGCGACGGACGAGAGCCTCGTCTCGCACGAGATTCGAATGCCC
AGAGCGTAGACAATGAGAGAACAAGTGATGAAAGAGAGAATCAAGATGGC
TGCGACGTTGATGAGGAAGAAATCGACAAAAACAGAGGGCAGATAGAGGT
ACGAGTCGCATTGCGAGTCGCGGAGGAACGAGGGTGCCACACGTAAACCT
TTTTTTCGTTTGTTTCGACGGAATGAAGAGATAAATAATCAGATCAGCCT
TCTTCTTTACCAAGATGCAATTTCGTCCACTACCATAGAATAATTCGATC
TCTTAATATTTCTACAAATAAGCTGTTTTCAGCGTAGATCCTTTGATTTT
ATCGGGATAGAAATATTGACACACATTCAACCTCCTCAAACAATCACGGA
TGAAAATATGTAACCCGCGGCATCAGCATCCCCAACGCTTTGTCCTTTCA
ACCCTCCACACGGATGTGTGCTTTACCCACTCACATGACGATGTTGGTCT
TAGCTCGAAGACTTCGACGATATGTCAGACGGCGAAGGGGAGCGCGGCGA
CGCCAGCGAGCCCCCGGGGGTTTTGCCTCAAGACCACTCGGACGTACGGC
GAATCAATCTAGCGGAGCGACGGAGAAGAAAAGAGGTACTGTGA
back to top

Coding sequence (CDS) from alignment at H-elongata_contig8364:1850..4793-

>mRNA_H-elongata_contig8364.15988.1 ID=mRNA_H-elongata_contig8364.15988.1|Name=mRNA_H-elongata_contig8364.15988.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1992bp|location=Sequence derived from alignment at H-elongata_contig8364:1850..4793- (Himanthalia elongata Himel1 dioecious)
CGAACGGCGAAAGACTACGCCTATATTTCCGTAAACGGCTGCCATCGAGG
CATGGGCGATTCTGGGAGTTACACGGTGTCTTGCACACACGAGCGGATGA
AAGCACTGACGCGCACGGGCCTTGAGCGCTACAACGCCGAGATGGCCAGG
ATAGCGCTGGAGCAGGAACTTCACGCGAAAGCCGTTGCGCTGCAGCGAAC
GGCGAAAGACTACGCCTATATTTCCGTAAACGGCTGCCATCGAGGCATGG
GCGATTCTGGGAGTTACACGGTGTCTTGCACACACGAGCGGATGAAAGCA
CTGACGCGCACGGGCCTTGAGCGCTACAACGCCGAGATGGCCAGGATAGC
GCTGGAGCAGGAACTTCACGCGAAAGCCGTTGCGCTGCAGGCCAAAGTGG
ACATCGGGAAGGCACAACTTGCTAAGCGGCGCGAAAGGGAGGACGCCGTG
GCTCGCTCGCTAGCTAGAAAGGCCAAAGTGGACATCGGGAAGGCACAACT
TGCTAAGCGGCGCGAAAGGGAGGACGCCGTGGCTCGCTCGCTAGCTAGAA
AGGCGGAAAATCGACGTCTCAAATCTTCGACTGGTGCGTCTCGAAGCCGC
CGCAAGTGGGAGCTGAGAATGCAGGATTCACGCGTCCTGGAGACCCGGGG
TGAATGGGAGCAACGACGGGATGGCGGAGGAAGCGTGTTCTACCACTGCT
TTTCAAAGGACTCCCTAGTAGAGCCGTTCAGGCGGAAAATCGACGTCTCA
AATCTTCGACTGGTGCGTCTCGAAGCCGCCGCAAGTGGGAGCTGAGAATG
CAGGATTCACGCGTCCTGGAGACCCGGGGTGAATGGGAGCAACGACGGGA
TGGCGGAGGAAGCGTGTTCTACCACTGCTTTTCAAAGGACTCCCTAGTAG
AGCCGTTCAGCTGGGATCATCCCGAATTTTGGGAGGAAGCCGTCGTCAAC
GCTGCAGTGGCAGAGACTGTGAGCTCTGTTGAGAACGTTTCTGGTGCAGT
TGGTGATGGACAACCAAACGGTGAACTCTCGAGCTGGGATCATCCCGAAT
TTTGGGAGGAAGCCGTCGTCAACGCTGCAGTGGCAGAGACTGTGAGCTCT
GTTGAGAACGTTTCTGGTGCAGTTGGTGATGGACAACCAAACGGTGAACT
CTCGAGTCTCCGTGCCGTCGGAGTGGCTCAAAACCCGAACGTCGAAGACT
CCTCCAACATGACATCATCCAGAGCACTTCTCGCCGCACGGACCTACACA
GATGAAGAAAAGGTATCAATGGCGGTGACTCGCCTTGCCGAGAACGAGAG
GCTCTTGGGAGCCCTGGCCTGGCGGCTTGGGATACCATTGCGTGACGTTC
GGCGCGACGGACGAGAGCCTCGTCTCGCACGAGATTCGAATGCCCAGAGC
TCTCCGTGCCGTCGGAGTGGCTCAAAACCCGAACGTCGAAGACTCCTCCA
ACATGACATCATCCAGAGCACTTCTCGCCGCACGGACCTACACAGATGAA
GAAAAGGTATCAATGGCGGTGACTCGCCTTGCCGAGAACGAGAGGCTCTT
GGGAGCCCTGGCCTGGCGGCTTGGGATACCATTGCGTGACGTTCGGCGCG
ACGGACGAGAGCCTCGTCTCGCACGAGATTCGAATGCCCAGAGCGAAGAA
ATCGACAAAAACAGAGGGCAGATAGAGGAAGAAATCGACAAAAACAGAGG
GCAGATAGAGCTCGAAGACTTCGACGATATGTCAGACGGCGAAGGGGAGC
GCGGCGACGCCAGCGAGCCCCCGGGGGTTTTGCCTCAAGACCACTCGGAC
GTACGGCGAATCAATCTAGCGGAGCGACGGAGAAGAAAAGAGGTACTGTG
ACTCGAAGACTTCGACGATATGTCAGACGGCGAAGGGGAGCGCGGCGACG
CCAGCGAGCCCCCGGGGGTTTTGCCTCAAGACCACTCGGACGTACGGCGA
ATCAATCTAGCGGAGCGACGGAGAAGAAAAGAGGTACTGTGA
back to top