mRNA_H-elongata_contig83371.15976.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig83371.15976.1
Unique NamemRNA_H-elongata_contig83371.15976.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig83371.15976.1 vs. uniprot
Match: D7G4J0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G4J0_ECTSI)

HSP 1 Score: 103 bits (257), Expect = 3.210e-24
Identity = 53/68 (77.94%), Postives = 58/68 (85.29%), Query Frame = 1 
Query:    1 SLPVLLVDLGRVCGFRLAGAEEAEAVGKGVRAALHKSFRERSEELFETGSAVHADTRTLAEVMRKGRE 204
            S+PVLLVDL RVCGFR+ GAEEA+ VG  VRAALH+SF ERSEELFETGSAVHADT TLAE MR+  E
Sbjct:  331 SVPVLLVDLARVCGFRVKGAEEADIVGGKVRAALHESFAERSEELFETGSAVHADTSTLAEEMRRRSE 398
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BLAST of mRNA_H-elongata_contig83371.15976.1 vs. uniprot
Match: A0A6H5JAG3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JAG3_9PHAE)

HSP 1 Score: 99.0 bits (245), Expect = 1.350e-22
Identity = 51/68 (75.00%), Postives = 56/68 (82.35%), Query Frame = 1 
Query:    1 SLPVLLVDLGRVCGFRLAGAEEAEAVGKGVRAALHKSFRERSEELFETGSAVHADTRTLAEVMRKGRE 204
            S+PVLLVDL RVCGF + GAEEA  VG  VRAALH+SF ERSEELF+TGSAVHADT TLAE MR+  E
Sbjct:  332 SVPVLLVDLARVCGFHVKGAEEAGIVGGKVRAALHESFAERSEELFDTGSAVHADTSTLAEEMRRRSE 399
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig83371.15976.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7G4J0_ECTSI3.210e-2477.94Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JAG3_9PHAE1.350e-2275.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig83371contigH-elongata_contig83371:2377..2580 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score103.6
Seed ortholog evalue3.7e-20
Seed eggNOG ortholog2880.D7G4J0
EggNOG OGs2CZMF@1,2SAWM@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-07_000440.1
Exons1
Model size204
Cds size204
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931241.0670004-CDS-H-elongata_contig83371:2376..25801622931241.0670004-CDS-H-elongata_contig83371:2376..2580Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig83371 2377..2580 +
1691679755.9947078-CDS-H-elongata_contig83371:2376..25801691679755.9947078-CDS-H-elongata_contig83371:2376..2580Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig83371 2377..2580 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig83371.15976.1prot_H-elongata_contig83371.15976.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig83371 2377..2580 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig83371.15976.1

>prot_H-elongata_contig83371.15976.1 ID=prot_H-elongata_contig83371.15976.1|Name=mRNA_H-elongata_contig83371.15976.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=68bp
SLPVLLVDLGRVCGFRLAGAEEAEAVGKGVRAALHKSFRERSEELFETGS
AVHADTRTLAEVMRKGRE
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mRNA from alignment at H-elongata_contig83371:2377..2580+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig83371.15976.1 ID=mRNA_H-elongata_contig83371.15976.1|Name=mRNA_H-elongata_contig83371.15976.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=204bp|location=Sequence derived from alignment at H-elongata_contig83371:2377..2580+ (Himanthalia elongata Himel1 dioecious)
TCGCTGCCGGTGCTTCTCGTGGACCTCGGAAGGGTGTGCGGGTTTCGACT
TGCAGGGGCGGAGGAGGCAGAAGCGGTCGGCAAGGGTGTTCGAGCAGCGC
TCCACAAATCGTTCCGAGAACGTTCCGAGGAACTCTTCGAGACGGGGTCC
GCGGTCCACGCGGACACTCGTACTCTCGCGGAGGTGATGAGAAAGGGAAG
GGAG
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Coding sequence (CDS) from alignment at H-elongata_contig83371:2377..2580+

>mRNA_H-elongata_contig83371.15976.1 ID=mRNA_H-elongata_contig83371.15976.1|Name=mRNA_H-elongata_contig83371.15976.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=408bp|location=Sequence derived from alignment at H-elongata_contig83371:2377..2580+ (Himanthalia elongata Himel1 dioecious)
TCGCTGCCGGTGCTTCTCGTGGACCTCGGAAGGGTGTGCGGGTTTCGACT
TGCAGGGGCGGAGGAGGCAGAAGCGGTCGGCAAGGGTGTTCGAGCAGCGC
TCCACAAATCGTTCCGAGAACGTTCCGAGGAACTCTTCGAGACGGGGTCC
GCGGTCCACGCGGACACTCGTACTCTCGCGGAGGTGATGAGAAAGGGAAG
GGAGTCGCTGCCGGTGCTTCTCGTGGACCTCGGAAGGGTGTGCGGGTTTC
GACTTGCAGGGGCGGAGGAGGCAGAAGCGGTCGGCAAGGGTGTTCGAGCA
GCGCTCCACAAATCGTTCCGAGAACGTTCCGAGGAACTCTTCGAGACGGG
GTCCGCGGTCCACGCGGACACTCGTACTCTCGCGGAGGTGATGAGAAAGG
GAAGGGAG
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