mRNA_H-elongata_contig83298.15968.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig83298.15968.1
Unique NamemRNA_H-elongata_contig83298.15968.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig83298.15968.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig83298contigH-elongata_contig83298:354..690 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size339
Cds size333
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931240.381768-UTR-H-elongata_contig83298:353..3571622931240.381768-UTR-H-elongata_contig83298:353..357Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig83298 354..357 +
1691679755.7842379-UTR-H-elongata_contig83298:353..3571691679755.7842379-UTR-H-elongata_contig83298:353..357Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig83298 354..357 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931240.398457-CDS-H-elongata_contig83298:357..6901622931240.398457-CDS-H-elongata_contig83298:357..690Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig83298 358..690 +
1691679755.7945445-CDS-H-elongata_contig83298:357..6901691679755.7945445-CDS-H-elongata_contig83298:357..690Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig83298 358..690 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig83298.15968.1prot_H-elongata_contig83298.15968.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig83298 358..690 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig83298.15968.1

>prot_H-elongata_contig83298.15968.1 ID=prot_H-elongata_contig83298.15968.1|Name=mRNA_H-elongata_contig83298.15968.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=111bp
MSQCLGITKEGTVLVYPPYSLKLPFTKGSPEHRKPSDKLVPPVCPDSPLC
RSIAVKGHENNRRFSNGPHCFRPPSAVRRLSVWIVHQWRHACVKYSYNDV
YLCRNIATNSN
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mRNA from alignment at H-elongata_contig83298:354..690+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig83298.15968.1 ID=mRNA_H-elongata_contig83298.15968.1|Name=mRNA_H-elongata_contig83298.15968.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=337bp|location=Sequence derived from alignment at H-elongata_contig83298:354..690+ (Himanthalia elongata Himel1 dioecious)
GTCCATGAGCCAGTGCCTGGGTATCACAAAAGAGGGTACTGTTTTAGTGT
ACCCTCCGTATAGCCTGAAATTGCCTTTCACGAAAGGGAGTCCCGAACAT
CGCAAACCCTCTGATAAATTAGTCCCTCCTGTTTGTCCAGACTCTCCGCT
GTGCAGAAGTATCGCGGTCAAGGGACATGAAAATAATCGGAGATTCAGCA
ATGGTCCGCATTGTTTCCGACCGCCATCAGCTGTACGTCGTCTCTCAGTT
TGGATAGTCCATCAATGGCGGCATGCATGTGTAAAGTATTCGTATAACGA
TGTATATTTGTGTCGAAACATAGCCACCAACTCAAAC
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Coding sequence (CDS) from alignment at H-elongata_contig83298:354..690+

>mRNA_H-elongata_contig83298.15968.1 ID=mRNA_H-elongata_contig83298.15968.1|Name=mRNA_H-elongata_contig83298.15968.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=666bp|location=Sequence derived from alignment at H-elongata_contig83298:354..690+ (Himanthalia elongata Himel1 dioecious)
ATGAGCCAGTGCCTGGGTATCACAAAAGAGGGTACTGTTTTAGTGTACCC
TCCGTATAGCCTGAAATTGCCTTTCACGAAAGGGAGTCCCGAACATCGCA
AACCCTCTGATAAATTAGTCCCTCCTGTTTGTCCAGACTCTCCGCTGTGC
AGAAGTATCGCGGTCAAGGGACATGAAAATAATCGGAGATTCAGCAATGG
TCCGCATTGTTTCCGACCGCCATCAGCTGTACGTCGTCTCTCAGTTTGGA
TAGTCCATCAATGGCGGCATGCATGTGTAAAGTATTCGTATAACGATGTA
TATTTGTGTCGAAACATAGCCACCAACTCAAACATGAGCCAGTGCCTGGG
TATCACAAAAGAGGGTACTGTTTTAGTGTACCCTCCGTATAGCCTGAAAT
TGCCTTTCACGAAAGGGAGTCCCGAACATCGCAAACCCTCTGATAAATTA
GTCCCTCCTGTTTGTCCAGACTCTCCGCTGTGCAGAAGTATCGCGGTCAA
GGGACATGAAAATAATCGGAGATTCAGCAATGGTCCGCATTGTTTCCGAC
CGCCATCAGCTGTACGTCGTCTCTCAGTTTGGATAGTCCATCAATGGCGG
CATGCATGTGTAAAGTATTCGTATAACGATGTATATTTGTGTCGAAACAT
AGCCACCAACTCAAAC
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