mRNA_H-elongata_contig83278.15966.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig83278.15966.1
Unique NamemRNA_H-elongata_contig83278.15966.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig83278.15966.1 vs. uniprot
Match: D8LRG1_ECTSI (HNH endonuclease family protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LRG1_ECTSI)

HSP 1 Score: 230 bits (587), Expect = 3.910e-73
Identity = 104/139 (74.82%), Postives = 118/139 (84.89%), Query Frame = 1
Query:    7 RGSLCIFSLPSHLIIPQEFVNQHRTHPAFTRRNLFLRDGHKCQYCLKYFPPQDLSFDHVVPKKLGGKGTWDNVVTACGRCNNRKSDCQPRDLRSIGMNLSKWPKTPTFHELQVKARRYPPREIHETWEEFLYFESEIVD 423
            R    +  LPS +I  +EFVN HRTHP FTRRNLFLRD H+CQYC KYF P +LSFDHVVPKKLGGKGTWDNVVTACGRCNNRKSDC PRDL+SIGM+L+K+P TPTF +LQ KARRYPP EIHETW ++LYFESEI++
Sbjct:  184 RSPSVVVQLPS-VIALKEFVNNHRTHPPFTRRNLFLRDSHQCQYCQKYFAPHNLSFDHVVPKKLGGKGTWDNVVTACGRCNNRKSDCHPRDLKSIGMSLAKYPVTPTFSQLQAKARRYPPLEIHETWGDYLYFESEILE 321          
BLAST of mRNA_H-elongata_contig83278.15966.1 vs. uniprot
Match: A0A836CK35_9STRA (HNH endonuclease family protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CK35_9STRA)

HSP 1 Score: 171 bits (433), Expect = 1.220e-50
Identity = 79/137 (57.66%), Postives = 99/137 (72.26%), Query Frame = 1
Query:    7 RGSLCIFSLPSHLIIPQEFVNQHRTHPAFTRRNLFLRDGHKCQYCLKYFPPQDLSFDHVVPKKLGGKGTWDNVVTACGRCNNRKSDCQPRDLRSIGMNLSKWPKTPTFHELQVKARRYPPREIHETWEEFLYFESEI 417
            R +     LPS +I  + +VNQH   P+FTRRNL+LRDG++C YC K F   DLSFDHV P+KLGG  +W NVVT+C RCNN K DC P+ L  IGM L+K P  PTF+ELQ +ARRYPP+ IH+TW E+LY++S I
Sbjct:  126 RSANVELKLPS-VIALKGYVNQHAKVPSFTRRNLYLRDGYQCAYCSKQFQAGDLSFDHVTPRKLGGPTSWTNVVTSCHRCNNAKGDCHPKSLSRIGMRLNKAPHIPTFYELQNQARRYPPKLIHKTWAEYLYYDSAI 261          
BLAST of mRNA_H-elongata_contig83278.15966.1 vs. uniprot
Match: A0A2E4F2L9_9PROT (HNH endonuclease n=1 Tax=Rhodospirillaceae bacterium TaxID=1898112 RepID=A0A2E4F2L9_9PROT)

HSP 1 Score: 137 bits (346), Expect = 1.510e-38
Identity = 67/129 (51.94%), Postives = 87/129 (67.44%), Query Frame = 1
Query:   31 LPSHLIIPQEFVNQHRTHPAFTRRNLFLRDGHKCQYCLKYFPPQDLSFDHVVPKKLGGKGTWDNVVTACGRCNNRKSDCQPRDLRSIGMNLSKWPKTPTFHELQVKARRYPPREIHETWEEFLYFESEI 417
            LPS +I  + +V  +R  PAFTR N+FLRDG  CQYC KYF   DL+FDHV+PK  GG   W NV+TAC  CN RK +   R +  +GM+L   P+ PT +ELQ   RRYPP  +HE+W +FLY++SE+
Sbjct:   59 LPS-VISLKRYVQSNRR-PAFTRFNVFLRDGFTCQYCRKYFDTHDLTFDHVLPKSRGGFTNWTNVITACASCNLRKGN---RLMAEVGMHLVYMPRVPTVYELQNVGRRYPPNYLHESWSDFLYWDSEL 182          
BLAST of mRNA_H-elongata_contig83278.15966.1 vs. uniprot
Match: A0A7R9UEZ0_9STRA (Hypothetical protein n=4 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9UEZ0_9STRA)

HSP 1 Score: 142 bits (358), Expect = 1.770e-38
Identity = 67/131 (51.15%), Postives = 88/131 (67.18%), Query Frame = 1
Query:   31 LPSHLIIPQEFVNQHRTHPAFTRRNLFLRDGHKCQYCLKYFPPQDLSFDHVVPKKLGGKGTWDNVVTACGRCNNRKSDCQPRDLRSIGMNLSKWPKTPTFHELQVKARRYPPREIHETWEEFLYFESEIVD 423
            LPS +I  +E+V      PAFTRRNL+LRD ++C YC +YF  Q LS+DHV+P+  GG  +WDNVVT+C  CN RK +  P  L  IGM L   PK PT ++LQ +AR+YPPR  H+TWE +L + +E  D
Sbjct:  211 LPS-VIALKEYVKPDHKVPAFTRRNLYLRDNYRCAYCARYFYSQQLSYDHVLPRFYGGSTSWDNVVTSCTDCNGRKGNLHPSKLHEIGMRLLVQPKRPTSYQLQQQARKYPPRLKHKTWEMWLSYSAENSD 340          
BLAST of mRNA_H-elongata_contig83278.15966.1 vs. uniprot
Match: A0A2E7VAT6_9PROT (HNH endonuclease n=1 Tax=Rhodospirillaceae bacterium TaxID=1898112 RepID=A0A2E7VAT6_9PROT)

HSP 1 Score: 135 bits (339), Expect = 3.400e-38
Identity = 66/131 (50.38%), Postives = 87/131 (66.41%), Query Frame = 1
Query:   31 LPSHLIIPQEFVNQHRTHPAFTRRNLFLRDGHKCQYCLKYFPPQDLSFDHVVPKKLGGKGTWDNVVTACGRCNNRKSDCQPRDLRSIGMNLSKWPKTPTFHELQVKARRYPPREIHETWEEFLYFESEIVD 423
            LPS +I+ +EFV Q R  PAFTR N+FLRD   CQYC K FP QDL+FDH+VP+  GG   W NVVTAC RCN RK +  P  ++    N    P+ P+ +ELQ   R +PP  +HE+W +FLY++SE+ +
Sbjct:    3 LPS-VIVLKEFVLQSRR-PAFTRFNVFLRDRFSCQYCGKKFPTQDLTFDHLVPRSRGGTTNWKNVVTACSRCNLRKGNHLPESVKMYPKNK---PRVPSNYELQENGRAFPPNHLHESWRDFLYWDSELEE 128          
BLAST of mRNA_H-elongata_contig83278.15966.1 vs. uniprot
Match: A0A5J4Z0M3_PORPP (HNHc domain-containing protein n=1 Tax=Porphyridium purpureum TaxID=35688 RepID=A0A5J4Z0M3_PORPP)

HSP 1 Score: 140 bits (352), Expect = 9.810e-38
Identity = 66/139 (47.48%), Postives = 93/139 (66.91%), Query Frame = 1
Query:    7 RGSLCIFSLPSHLIIPQEFVNQHRTHPAFTRRNLFLRDGHKCQYCLKYFPPQDLSFDHVVPKKLGGKGTWDNVVTACGRCNNRKSDCQPRDLRSIGMNLSKWPKTPTFHELQVKARRYPPREIHETWEEFLYFESEIVD 423
            R +   F +PS +++ +E+    +  PAF+R N+FLRD   CQYC +   P DL+FDHVVPK  GGK  W+NVVTAC  CNNRK     +DLR  GM L + PK P+ +ELQ  ARR+PP+ +HE+W ++LY++ E+ +
Sbjct:  178 RSASAEFPVPS-VVVMKEYAKISKKRPAFSRYNVFLRDQFSCQYCGQSHRPVDLTFDHVVPKSRGGKLCWENVVTACISCNNRKGSMLLKDLR--GMRLQRTPKVPSLYELQQCARRFPPKYLHESWVDYLYWDQEMEE 313          
BLAST of mRNA_H-elongata_contig83278.15966.1 vs. uniprot
Match: A0A7S1XLE6_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1XLE6_9STRA)

HSP 1 Score: 139 bits (349), Expect = 3.580e-37
Identity = 65/131 (49.62%), Postives = 85/131 (64.89%), Query Frame = 1
Query:   31 LPSHLIIPQEFVNQHRTHPAFTRRNLFLRDGHKCQYCLKYFPPQDLSFDHVVPKKLGGKGTWDNVVTACGRCNNRKSDCQPRDLRSIGMNLSKWPKTPTFHELQVKARRYPPREIHETWEEFLYFESEIVD 423
            LPS + +       H+T PAFTRRNL+LRD ++C YC +YF  Q+LS+DHV+P+  GG   W+NVVT C  CN RK +  P  L+ IGM L K P  PT ++LQ +AR+YPPR  H TWE +L + S   D
Sbjct:  211 LPSVIALKDYVKPDHKT-PAFTRRNLYLRDNYRCAYCARYFYSQELSYDHVMPRFYGGGTNWENVVTCCVDCNGRKGNVHPNKLQDIGMRLLKKPTKPTSYQLQQQARKYPPRLRHSTWESWLGYTSADED 340          
BLAST of mRNA_H-elongata_contig83278.15966.1 vs. uniprot
Match: A0A6N9BDW4_9PROT (HNH endonuclease n=2 Tax=Alphaproteobacteria bacterium TaxID=1913988 RepID=A0A6N9BDW4_9PROT)

HSP 1 Score: 134 bits (337), Expect = 5.610e-37
Identity = 68/137 (49.64%), Postives = 85/137 (62.04%), Query Frame = 1
Query:    7 RGSLCIFSLPSHLIIPQEFVNQHRTHPAFTRRNLFLRDGHKCQYCLKYFPPQDLSFDHVVPKKLGGKGTWDNVVTACGRCNNRKSDCQPRDLRSIGMNLSKWPKTPTFHELQVKARRYPPREIHETWEEFLYFESEI 417
            R       LPS +I  +++V   R HPAFTR N+FLRD   CQYC    PP+DL+FDHVVP+  GG+  W NVV ACGRCN  K D   R LR  GM L K P  P+   LQ   R +PP  +HE+W +FLY++SE+
Sbjct:   68 RSPTWAMRLPS-VIALRDYVAPAR-HPAFTRFNVFLRDRFGCQYCGSRLPPEDLTFDHVVPRSRGGRTAWTNVVAACGRCNRAKGD---RLLRDSGMRLQKEPVRPSVWRLQENGRSFPPNFLHESWSDFLYWDSEL 199          
BLAST of mRNA_H-elongata_contig83278.15966.1 vs. uniprot
Match: A0A0D6P6F3_9PROT (Endonuclease n=2 Tax=Acetobacteraceae TaxID=433 RepID=A0A0D6P6F3_9PROT)

HSP 1 Score: 133 bits (334), Expect = 1.020e-36
Identity = 59/111 (53.15%), Postives = 78/111 (70.27%), Query Frame = 1
Query:   85 PAFTRRNLFLRDGHKCQYCLKYFPPQDLSFDHVVPKKLGGKGTWDNVVTACGRCNNRKSDCQPRDLRSIGMNLSKWPKTPTFHELQVKARRYPPREIHETWEEFLYFESEI 417
            PAFTR N+FLRDG  CQYC + FP  DL+FDHV+P+  GG+ TW+NVVTACG CN RK  C PR+     M+    P+ PT  ELQ + R +PP  +HE+W ++LY++SE+
Sbjct:   77 PAFTRFNVFLRDGFACQYCGERFPTPDLTFDHVIPRSRGGRTTWENVVTACGCCNLRKGSCLPRECH---MHPRVSPRQPTTWELQDQGRAFPPNYLHESWRDYLYWDSEL 184          
BLAST of mRNA_H-elongata_contig83278.15966.1 vs. uniprot
Match: A0A357FZ58_9PROT (HNH endonuclease n=1 Tax=Rhodospirillaceae bacterium TaxID=1898112 RepID=A0A357FZ58_9PROT)

HSP 1 Score: 133 bits (334), Expect = 1.040e-36
Identity = 65/141 (46.10%), Postives = 92/141 (65.25%), Query Frame = 1
Query:    1 MLRGSLCIFSLPSHLIIPQEFVNQHRTHPAFTRRNLFLRDGHKCQYCLKYFPPQDLSFDHVVPKKLGGKGTWDNVVTACGRCNNRKSDCQPRDLRSIGMNLSKWPKTPTFHELQVKARRYPPREIHETWEEFLYFESEIVD 423
            ++R   C   LPS +I+ +EFV   RT PAFTR N+FLRD   CQYC   F   +L+FDHV+P+  GG+ TWDN+V+AC  CN  K +  P +    GM     P+ PT  ELQ + R++PP  +H++WE+FLY+++E+VD
Sbjct:   51 VIRSPSCEMKLPS-VIVLKEFVPMART-PAFTRFNVFLRDHWCCQYCAGGFKTHELTFDHVIPRSRGGRTTWDNIVSACQECNRAKGNQLPHES---GMYPVIEPRRPTIFELQEQGRKFPPNFLHKSWEDFLYWDTELVD 186          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig83278.15966.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LRG1_ECTSI3.910e-7374.82HNH endonuclease family protein n=1 Tax=Ectocarpus... [more]
A0A836CK35_9STRA1.220e-5057.66HNH endonuclease family protein n=1 Tax=Tribonema ... [more]
A0A2E4F2L9_9PROT1.510e-3851.94HNH endonuclease n=1 Tax=Rhodospirillaceae bacteri... [more]
A0A7R9UEZ0_9STRA1.770e-3851.15Hypothetical protein n=4 Tax=Pinguiococcus pyrenoi... [more]
A0A2E7VAT6_9PROT3.400e-3850.38HNH endonuclease n=1 Tax=Rhodospirillaceae bacteri... [more]
A0A5J4Z0M3_PORPP9.810e-3847.48HNHc domain-containing protein n=1 Tax=Porphyridiu... [more]
A0A7S1XLE6_9STRA3.580e-3749.62Hypothetical protein n=1 Tax=Phaeomonas parva TaxI... [more]
A0A6N9BDW4_9PROT5.610e-3749.64HNH endonuclease n=2 Tax=Alphaproteobacteria bacte... [more]
A0A0D6P6F3_9PROT1.020e-3653.15Endonuclease n=2 Tax=Acetobacteraceae TaxID=433 Re... [more]
A0A357FZ58_9PROT1.040e-3646.10HNH endonuclease n=1 Tax=Rhodospirillaceae bacteri... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig83278contigH-elongata_contig83278:1545..2543 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score230.3
Seed ortholog evalue5.4e-58
Seed eggNOG ortholog2880.D8LRG1
EggNOG free text desc.HNH endonuclease
EggNOG OGs2QQI3@2759,COG1403@1
COG Functional cat.V
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons2
Model size423
Cds size423
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931240.2182755-CDS-H-elongata_contig83278:1544..17251622931240.2182755-CDS-H-elongata_contig83278:1544..1725Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig83278 1545..1725 -
1691679755.7390893-CDS-H-elongata_contig83278:1544..17251691679755.7390893-CDS-H-elongata_contig83278:1544..1725Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig83278 1545..1725 -
1622931240.2344759-CDS-H-elongata_contig83278:2301..25431622931240.2344759-CDS-H-elongata_contig83278:2301..2543Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig83278 2302..2543 -
1691679755.7507925-CDS-H-elongata_contig83278:2301..25431691679755.7507925-CDS-H-elongata_contig83278:2301..2543Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig83278 2302..2543 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig83278.15966.1prot_H-elongata_contig83278.15966.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig83278 1545..2543 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig83278.15966.1

>prot_H-elongata_contig83278.15966.1 ID=prot_H-elongata_contig83278.15966.1|Name=mRNA_H-elongata_contig83278.15966.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=141bp
MLRGSLCIFSLPSHLIIPQEFVNQHRTHPAFTRRNLFLRDGHKCQYCLKY
FPPQDLSFDHVVPKKLGGKGTWDNVVTACGRCNNRKSDCQPRDLRSIGMN
LSKWPKTPTFHELQVKARRYPPREIHETWEEFLYFESEIVD
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mRNA from alignment at H-elongata_contig83278:1545..2543-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig83278.15966.1 ID=mRNA_H-elongata_contig83278.15966.1|Name=mRNA_H-elongata_contig83278.15966.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=999bp|location=Sequence derived from alignment at H-elongata_contig83278:1545..2543- (Himanthalia elongata Himel1 dioecious)
ATGTTGCGCGGTTCCCTTTGTATTTTCTCTCTGCCCTCACATCTCATCAT ACCGCAGGAGTTCGTTAACCAGCACAGGACGCACCCGGCTTTCACGCGGC GCAATCTTTTCTTACGAGATGGTCACAAGTGTCAGTACTGCCTCAAGTAT TTCCCGCCCCAGGACCTGAGCTTCGATCACGTGGTGCCCAAGAAGCTAGG GGGCAAGGGGACGTGGGACAACGTCGTGACGGCGTGCGGAAGGTACGAAT CGTAATTGTCCTCCTTGTCCGGTCGGTTGGTCGGTCGGTCGGTCGATCCC GTTTGTTCTCAACACACTAAAGTATTAGTAATAAAACTAGAATGCTTGGA CGACCTACTCGTTCGTATGGTGTATATACGGACCCCAAAGAGTGTTTCGT CAGTGTAGATCAGTGCGGTAGTGCCGAACCCGTCTCACGAGACCAAATTG TCAGGCGCGAACGGTGGCAGGGGAAAATGGTTTTCCCTCTTCAGCTGACC CATACTAAAGACTACATGTCTGATGTTATGGCCACAAGCACTCTAGGACT TAGTAAAATGATAATTCGATATTTCCAACATATTGATGGTTGATGGTTGA TGGTTGAAGCATCTGTGTCACGATAATGATAATTTGCAATGTAGAACCCC CCCCTCACTAGTTTGGTCTATTCTATCTATTCTATACTATACTATACTAT GATTGCAGCTGCAGTTTGAGGAGGAACATCGCCGTCCTCACAGCGTTAGG CGAACGTTCATGACCACCTAACCCCGGTCCGGCCCGGCCTCCGTAACTCC GTAACTCGTTAACTATAGGTGCAACAATAGAAAGAGCGACTGCCAACCGC GAGACTTGCGCTCGATTGGCATGAACCTTTCGAAGTGGCCCAAGACGCCC ACGTTCCACGAACTCCAGGTGAAGGCTCGGCGATACCCACCCAGGGAGAT CCATGAGACTTGGGAGGAGTTCCTCTACTTTGAAAGTGAGATCGTGGAC
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Coding sequence (CDS) from alignment at H-elongata_contig83278:1545..2543-

>mRNA_H-elongata_contig83278.15966.1 ID=mRNA_H-elongata_contig83278.15966.1|Name=mRNA_H-elongata_contig83278.15966.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=846bp|location=Sequence derived from alignment at H-elongata_contig83278:1545..2543- (Himanthalia elongata Himel1 dioecious)
ATGTTGCGCGGTTCCCTTTGTATTTTCTCTCTGCCCTCACATCTCATCAT
ACCGCAGGAGTTCGTTAACCAGCACAGGACGCACCCGGCTTTCACGCGGC
GCAATCTTTTCTTACGAGATGGTCACAAGTGTCAGTACTGCCTCAAGTAT
TTCCCGCCCCAGGACCTGAGCTTCGATCACGTGGTGCCCAAGAAGCTAGG
GGGCAAGGGGACGTGGGACAACGTCGTGACGGCGTGCGGAAGATGTTGCG
CGGTTCCCTTTGTATTTTCTCTCTGCCCTCACATCTCATCATACCGCAGG
AGTTCGTTAACCAGCACAGGACGCACCCGGCTTTCACGCGGCGCAATCTT
TTCTTACGAGATGGTCACAAGTGTCAGTACTGCCTCAAGTATTTCCCGCC
CCAGGACCTGAGCTTCGATCACGTGGTGCCCAAGAAGCTAGGGGGCAAGG
GGACGTGGGACAACGTCGTGACGGCGTGCGGAAGGTGCAACAATAGAAAG
AGCGACTGCCAACCGCGAGACTTGCGCTCGATTGGCATGAACCTTTCGAA
GTGGCCCAAGACGCCCACGTTCCACGAACTCCAGGTGAAGGCTCGGCGAT
ACCCACCCAGGGAGATCCATGAGACTTGGGAGGAGTTCCTCTACTTTGAA
AGTGAGATCGTGGACGTGCAACAATAGAAAGAGCGACTGCCAACCGCGAG
ACTTGCGCTCGATTGGCATGAACCTTTCGAAGTGGCCCAAGACGCCCACG
TTCCACGAACTCCAGGTGAAGGCTCGGCGATACCCACCCAGGGAGATCCA
TGAGACTTGGGAGGAGTTCCTCTACTTTGAAAGTGAGATCGTGGAC
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