mRNA_H-elongata_contig83235.15960.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig83235.15960.1
Unique NamemRNA_H-elongata_contig83235.15960.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig83235.15960.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig83235contigH-elongata_contig83235:34..2375 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons7
Model size354
Cds size351
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931239.6504533-CDS-H-elongata_contig83235:35..771622931239.6504533-CDS-H-elongata_contig83235:35..77Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig83235 36..77 -
1691679755.512822-CDS-H-elongata_contig83235:35..771691679755.512822-CDS-H-elongata_contig83235:35..77Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig83235 36..77 -
1622931239.671468-CDS-H-elongata_contig83235:446..4971622931239.671468-CDS-H-elongata_contig83235:446..497Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig83235 447..497 -
1691679755.5206168-CDS-H-elongata_contig83235:446..4971691679755.5206168-CDS-H-elongata_contig83235:446..497Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig83235 447..497 -
1622931239.6894572-CDS-H-elongata_contig83235:742..7901622931239.6894572-CDS-H-elongata_contig83235:742..790Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig83235 743..790 -
1691679755.5284913-CDS-H-elongata_contig83235:742..7901691679755.5284913-CDS-H-elongata_contig83235:742..790Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig83235 743..790 -
1622931239.7107325-CDS-H-elongata_contig83235:1161..12091622931239.7107325-CDS-H-elongata_contig83235:1161..1209Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig83235 1162..1209 -
1691679755.5364306-CDS-H-elongata_contig83235:1161..12091691679755.5364306-CDS-H-elongata_contig83235:1161..1209Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig83235 1162..1209 -
1622931239.7277372-CDS-H-elongata_contig83235:1479..15301622931239.7277372-CDS-H-elongata_contig83235:1479..1530Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig83235 1480..1530 -
1691679755.5446193-CDS-H-elongata_contig83235:1479..15301691679755.5446193-CDS-H-elongata_contig83235:1479..1530Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig83235 1480..1530 -
1622931239.7478468-CDS-H-elongata_contig83235:1887..19591622931239.7478468-CDS-H-elongata_contig83235:1887..1959Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig83235 1888..1959 -
1691679755.5525873-CDS-H-elongata_contig83235:1887..19591691679755.5525873-CDS-H-elongata_contig83235:1887..1959Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig83235 1888..1959 -
1622931239.7687054-CDS-H-elongata_contig83235:2336..23751622931239.7687054-CDS-H-elongata_contig83235:2336..2375Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig83235 2337..2375 -
1691679755.5605416-CDS-H-elongata_contig83235:2336..23751691679755.5605416-CDS-H-elongata_contig83235:2336..2375Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig83235 2337..2375 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig83235.15960.1prot_H-elongata_contig83235.15960.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig83235 36..2375 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig83235.15960.1

>prot_H-elongata_contig83235.15960.1 ID=prot_H-elongata_contig83235.15960.1|Name=mRNA_H-elongata_contig83235.15960.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=117bp
RHHHRCPPRPRHVSLHRRHPPCLHRPRHLVSISCADPNLLHQRHHPCLPR
PRRVSLHRLHPPCPHRLRHVSLHRCHPPRLHRLRHQSLLHQRHHPCLPQP
RRVSLHQRHPPCLHRPR
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mRNA from alignment at H-elongata_contig83235:34..2375-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig83235.15960.1 ID=mRNA_H-elongata_contig83235.15960.1|Name=mRNA_H-elongata_contig83235.15960.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=2342bp|location=Sequence derived from alignment at H-elongata_contig83235:34..2375- (Himanthalia elongata Himel1 dioecious)
CGGCACCATCACCGGTGCCCACCCCGGCCCCGACACGTGGTAAGTACTTC
GTATATATGGCCCGTTCAAGGATTTCCCCCAAAATGGTAAGAATGTCAAA
TATTATATAGAACGCTTTTGAAGCGGCGTTTGTAAAGATGTCGACATATA
TAGATCATCATCGCACTCGATCGTCCACGGATCGTGATGCCTCCCACTTT
TTTAGCAAGCCCTTTCATAGGCTTACATGAGCTTTGTGAGACCACCACCG
AAGTGGACTTTCGAAAAAGTCTGAGTGCACACGTGCTTCTAGGAATCTAA
CGAATGCATCGCGTCGAGGCAGAAGCCGTCCGATGATATAATGACGAGTG
GAAATCGGTCATGAGAGCCTTATCACAACCCACACACTAAAATATACAAA
CCTCATACACCCACAGAGCCTACACCGGCGCCATCCCCCATGCCTACACC
GGCCCCGACACCTGGTGAGTATTTCGTGTGCGGACCCCGTTCACGGTCTC
CTGGAAACAATGTGGTAAAATAGTCGATTCGTATATAGATATTTTGAAGC
TATTCTCGGCAAGATATGGAAAGGTACGGCGGGATGCCACTGTCACTTGA
TCCATGGATAAGCATGGCTCCTACTGCTGTAGCAGCCTTTGGTAGGCGTA
CATGAATTATGTGGGCCCACCATCGAGGGGGAGTTTGGCAAACGTCTGAG
CGCAAGCGTGCGTTTGGGAATCTAACGAACGCCTCGTGTGTAGGTAGAAG
TCCTCCAATTATACAATGCCAGGCGGGAGCCCGCCGTTGTGGACTTGTCA
TGACGCACACAATCTTATATATATTTACATCCCACATATCCGCAGAACCT
ACTACACCAGCGCCATCACCCGTGCCTACCCCGACCCCGACGCGTGGTAA
GTACTTCGTATATGTGGCTTGTTCAACGATTTTCACAAATTAGTAGAAAA
GTAAAATATTACATAGCACGCTTTTGAAGTGGCACTTGTAAAGATCTCGA
CAGATATGGATTATCATTACACTTGATTGTCCACGGATGATAAGACCCCC
CACTATTTTAGACACCTTTGATAGGCTTGCATGAGCTCTGTGAGACCACC
AACGAAGTGGGCTTCGAAAACGTCTGAGTGCGAATCTAGTGAATGTATCA
CGTGTAACACCCACAGAGCCTACACCGGCTCCATCCCCCGTGCCCACACC
GGCTCCGACACGTGGTGAGTAATTCAGCTAAGGGTCCTGTTCACGATCTC
CTTCAAAGTGATAAGATAGTCGATTGGTATATAGATATTTTGAAGCTGCC
CTCGGCAGGATATAGAAAGGTTCGACGCAATGCAACTGGCACTTAAACTA
CGAATGGGCATGCCTCCCACTACTGTAGCAGCCCTTAGTAGGTAGATGAG
CTCTCTGAGCCGACCATCGAGGTGAAGTTTCGTAAAAGTCTGAGCGCAAA
TGTGTTGTTGAAAATCTAACGAACGTCTCGCGTGTATGTAGAAGTTCTCT
AATGATATAATGTCGAGCGAAAACAAGACATGAGAGCCTTATCATAATCC
ACGCACTAAGATATATAACATACATACACTCGCAGAGCCTACACCGGTGC
CATCCCCCGCGCCTACACCGGCTCCGACACCAGGTAAGTATTTCGTGAGA
GCCTCATTCACGATCTTCCGCAAATCAGTAATAATTTAATATTCCCCAGC
ATCGACGTGGAGTTTCGTCAACGTCTGAGCGCAAACAAACGTGCTTTGGG
GAATCTAACGAACGCCTGGTGTGTAGGCAAAAGTCCTCCGATGGTATAAT
GCCGAGCGGAAGCCAGCCGTTATGGAGCTGTCATGACACACGCAATCTGA
TCTATATTTACGTCCCACATATCCGCAGAGCCTACTACACCAGCGCCATC
ACCCGTGCCTACCCCAACCCCGACGTGTGGTGAGTATTTCATATATATAT
GTGTGCCCGTTCAAGGATTTTCACAAATCGGTAAGAAAGTCAAATATTAC
ATAGCACGCTTTTGAAGCGGCACTTGTAAAACTCTGGACAGAACATATAT
GAATTATTATCGTACTTGACCGTCCACGGATGATAATGCCTCCCACTGTT
TTAGCAATCCTTGATAGACTTATATGATCTCGGTGAGACCACCAAAGACG
TGGACTTTCGAAAACGTCTTCGTGCGAATCTAACAAATATATCGCGCGTA
GGTAGAAGTCCTCCAATTATAGCATGCCGAGCAGAGATCAGACATGATAA
TCTTGTCATAACCCCACACTAAGATATATAAAACCCATACACACACAGAG
CCTACACCAGCGCCATCCCCCGTGCCTACACCGGCCCCGACA
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Coding sequence (CDS) from alignment at H-elongata_contig83235:34..2375-

>mRNA_H-elongata_contig83235.15960.1 ID=mRNA_H-elongata_contig83235.15960.1|Name=mRNA_H-elongata_contig83235.15960.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=702bp|location=Sequence derived from alignment at H-elongata_contig83235:34..2375- (Himanthalia elongata Himel1 dioecious)
CGGCACCATCACCGGTGCCCACCCCGGCCCCGACACGTGCGGCACCATCA
CCGGTGCCCACCCCGGCCCCGACACGTGAGCCTACACCGGCGCCATCCCC
CATGCCTACACCGGCCCCGACACCTGGTGAGTATTTCGTGTGCGGACCCC
AGCCTACACCGGCGCCATCCCCCATGCCTACACCGGCCCCGACACCTGGT
GAGTATTTCGTGTGCGGACCCCAACCTACTACACCAGCGCCATCACCCGT
GCCTACCCCGACCCCGACGCGTGAACCTACTACACCAGCGCCATCACCCG
TGCCTACCCCGACCCCGACGCGTGAGCCTACACCGGCTCCATCCCCCGTG
CCCACACCGGCTCCGACACGTGAGCCTACACCGGCTCCATCCCCCGTGCC
CACACCGGCTCCGACACGTGAGCCTACACCGGTGCCATCCCCCGCGCCTA
CACCGGCTCCGACACCAGAGCCTACACCGGTGCCATCCCCCGCGCCTACA
CCGGCTCCGACACCAGAGCCTACTACACCAGCGCCATCACCCGTGCCTAC
CCCAACCCCGACGTGTGAGCCTACTACACCAGCGCCATCACCCGTGCCTA
CCCCAACCCCGACGTGTGAGCCTACACCAGCGCCATCCCCCGTGCCTACA
CCGGCCCCGAAGCCTACACCAGCGCCATCCCCCGTGCCTACACCGGCCCC
GA
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