mRNA_H-elongata_contig83209.15959.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig83209.15959.1
Unique NamemRNA_H-elongata_contig83209.15959.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig83209.15959.1 vs. uniprot
Match: A0A6H5LG27_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LG27_9PHAE)

HSP 1 Score: 88.6 bits (218), Expect = 9.160e-16
Identity = 48/85 (56.47%), Postives = 57/85 (67.06%), Query Frame = 1 
Query:  712 DGRALKKAATMPTIPRVSLLATPGSKPRGSRKCVQFQV------------------PENEGLDSDNFDSPLPEFLSNPDIRFEVS 912
            + R +KKAAT+P +PRVSLL  P ++P+G RK VQFQV                  PENEGLDSD  DSPLPEFLSNPD+RFEV+
Sbjct:  558 EARLMKKAATLPAMPRVSLLL-PSNRPKGGRKSVQFQVGIMRCDRVVVQCTATAVVPENEGLDSDTTDSPLPEFLSNPDVRFEVA 641
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BLAST of mRNA_H-elongata_contig83209.15959.1 vs. uniprot
Match: D8LRB0_ECTSI (NB-ARC and TPR repeat-containig protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LRB0_ECTSI)

HSP 1 Score: 77.0 bits (188), Expect = 6.510e-12
Identity = 34/42 (80.95%), Postives = 38/42 (90.48%), Query Frame = 1 
Query:  787 KPRGSRKCVQFQVPENEGLDSDNFDSPLPEFLSNPDIRFEVS 912
            +P+G RK VQFQVPENEGLDSD  DSPLPEFLSNPD+RFEV+
Sbjct:  161 RPKGGRKSVQFQVPENEGLDSDTTDSPLPEFLSNPDVRFEVT 202
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig83209.15959.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5LG27_9PHAE9.160e-1656.47Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LRB0_ECTSI6.510e-1280.95NB-ARC and TPR repeat-containig protein n=1 Tax=Ec... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig83209contigH-elongata_contig83209:438..2597 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score77.0
Seed ortholog evalue1.7e-11
Seed eggNOG ortholog2880.D8LRB0
KEGG koko:K10407,ko:K19360
KEGG Pathwayko05132,map05132
EggNOG free text desc.determination of stomach left/right asymmetry
EggNOG OGsCOG0457@1,KOG1840@2759
COG Functional cat.C
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03019,ko03036,ko04812
Hectar predicted targeting categoryother localisation
Exons2
Model size917
Cds size915
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931239.5626962-CDS-H-elongata_contig83209:437..12591622931239.5626962-CDS-H-elongata_contig83209:437..1259Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig83209 438..1259 +
1691679755.4908-CDS-H-elongata_contig83209:437..12591691679755.4908-CDS-H-elongata_contig83209:437..1259Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig83209 438..1259 +
1622931239.5985298-CDS-H-elongata_contig83209:2503..25961622931239.5985298-CDS-H-elongata_contig83209:2503..2596Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig83209 2504..2596 +
1691679755.5044394-CDS-H-elongata_contig83209:2503..25961691679755.5044394-CDS-H-elongata_contig83209:2503..2596Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig83209 2504..2596 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig83209.15959.1prot_H-elongata_contig83209.15959.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig83209 438..2596 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig83209.15959.1

>prot_H-elongata_contig83209.15959.1 ID=prot_H-elongata_contig83209.15959.1|Name=mRNA_H-elongata_contig83209.15959.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=305bp
GRGGGGGGSSDRRGRGAEQQTHEWSDSESMEDDSSESDSAEDDDLGDDDS
DEDDDDEDDVMDGEEEEDPSPETTTTSTSTSTTTTTVKPSSAPPLYRLPS
HSSNVSSQSSNASPETEIAVVEEPATGSEGVGRQKQSSASAPLLASSSTV
STSSSSTVSSASLLSPLSPPPPLELSGQTIVGKGVLSTLKPLPLASSSSS
TAVGALKEVGVGAAVGNARQEEGAAGNREAGESAGVSDGRALKKAATMPT
IPRVSLLATPGSKPRGSRKCVQFQVPENEGLDSDNFDSPLPEFLSNPDIR
FEVST
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mRNA from alignment at H-elongata_contig83209:438..2597+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig83209.15959.1 ID=mRNA_H-elongata_contig83209.15959.1|Name=mRNA_H-elongata_contig83209.15959.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=2160bp|location=Sequence derived from alignment at H-elongata_contig83209:438..2597+ (Himanthalia elongata Himel1 dioecious)
GGGAGAGGCGGCGGAGGCGGCGGCAGCTCCGACCGCAGGGGCCGCGGCGC
GGAACAACAGACCCACGAGTGGTCGGACAGCGAATCAATGGAAGATGACA
GCTCGGAGAGCGACAGCGCGGAGGACGATGATTTGGGTGATGATGATAGT
GATGAGGATGATGACGATGAGGATGACGTCATGGATGGGGAAGAGGAAGA
GGACCCATCTCCAGAAACGACAACCACTTCCACTTCCACTTCCACCACCA
CCACAACTGTGAAGCCGTCCTCGGCGCCACCGCTTTACCGCCTCCCCTCC
CATAGTTCCAACGTCTCCTCCCAGAGTTCCAACGCCTCCCCGGAGACGGA
GATCGCTGTCGTCGAGGAGCCCGCGACCGGTAGCGAGGGTGTGGGAAGAC
AGAAGCAATCGTCGGCTTCCGCTCCTCTGTTGGCGTCGTCATCGACGGTT
TCGACTTCCTCGTCGTCCACGGTCTCCTCGGCTTCGTTGTTGTCCCCTTT
GTCCCCTCCCCCCCCTCTCGAACTCTCGGGTCAGACGATCGTTGGAAAAG
GGGTATTGTCGACGTTGAAACCCTTGCCTCTGGCTTCTTCGTCATCGTCA
ACCGCAGTAGGGGCTCTGAAGGAAGTGGGTGTAGGGGCGGCTGTGGGGAA
CGCGAGGCAGGAAGAAGGGGCTGCGGGAAATAGGGAGGCAGGAGAATCGG
CGGGGGTGTCGGATGGACGAGCGCTGAAAAAGGCGGCCACTATGCCGACG
ATACCCAGGGTGTCGCTACTGGCTACTCCCGGAAGCAAGCCCAGGGGTAG
TCGGAAGTGCGTGCAATTTCAGGTCAGAGGCGTGTTGTTGCTGAGTGTTT
TTTTTTTGTGGGAGAGGGGGGAGTTATTGGGGATGCCGAAGAGGAGGTTG
TCCTTTTAGCTTTTGCTTTTAATGATTTGGAATTATTATTCGGATCTTGA
ATATTACACTAGTTGGTACCCTTGACTTCAACACTCACAGGCCTAAAAAT
ATGTGGATGTTTGAAAGATTTGATTGAGTTTATATGTTTGAAGAAAAATT
ATTCTTCTTTTTTTTTGTTCCCCAGAAGGCCTGTAAATCAGGGCAGGAAC
TCGATCTTTTGTTTAAAATACTAAATTCAATATAAAACTTGAAACCCAGT
TCCAGAAGGCCAGGGCAGGAACTCGATCTTTAACGATATCTGTAAATCAG
GGGACGCGATTATTACATCCACAACCCCCTCGATCAGGGATTGTAAGTCG
CTAAGGACTCTAACCTTACAAACCTTCCCTTAACCCTTCTGGAACTGGGT
TTCAAGTTTTATATTGAATTTAGTATTTTAAACAAAAGATCGAGTTCCAT
AGGGGTTAAGTAGCCCTCTAGCTTTGCTCAGTGCACGAGCTATCCTGCCC
ATTAGGGCTTTTTGATCCGCGGTGGGAGCTGCGATACTGCGATATCCAAC
TTATTTTACCCAGGGTTTATGCAGTAAGAAGGGTGCATGGATACCTTCAT
CATCCGGGATAGGTATGCCCTTGTCCCCCCGAAGAGGCCGCAGGCTCCCG
AAATATTTCGTCTTGTTTCCACTTTTGGATTGAACTCCTTTTAAGCTCTC
TCCACTTCAAAGTTTCGGGCTCCAATTCGCGTTTGACTCATTTTTGTTGT
TGTTGTAGGAGGCGATTTTAGAAGAGCAGGGAAAGTTTATTTTGCTGTCA
ATCGTCTGCCTGGAGACGTTTATTTTATCTCACGATTTTCTCAGCACCCC
GCTGCGATAGATATGCATCGCACCAAGGGGGACACCTTGAGAACCTATCG
AGACCTCTAGTAAGTCCTTCTCCTGCCAACCGGGGGAAGGGGAACGAAAA
ATCGATATTTCCGTAAACTTTTCTGACCGCGCATTGTTCTATTTTGTTCT
ATCATCGCCTGGACCACACCCGGAAGGCTGGCTGCGTGTCATGTTGTACG
TTTAAAACCAAGTAATAGCACTCGCCAACTGCCTCGCTGTTACTCTTATT
TATTTGCCTTCACCTTTGCCTTCACCCTCACCTTCACCGAACGTGCGTTA
TTTTTGACGGGGTCAGGTTCCCGAGAACGAGGGTCTTGACTCGGACAATT
TTGATTCCCCCCTTCCAGAGTTTTTGTCCAATCCGGACATCAGATTCGAG
GTATCGACGC
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Coding sequence (CDS) from alignment at H-elongata_contig83209:438..2597+

>mRNA_H-elongata_contig83209.15959.1 ID=mRNA_H-elongata_contig83209.15959.1|Name=mRNA_H-elongata_contig83209.15959.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1830bp|location=Sequence derived from alignment at H-elongata_contig83209:438..2597+ (Himanthalia elongata Himel1 dioecious)
GGGAGAGGCGGCGGAGGCGGCGGCAGCTCCGACCGCAGGGGCCGCGGCGC
GGAACAACAGACCCACGAGTGGTCGGACAGCGAATCAATGGAAGATGACA
GCTCGGAGAGCGACAGCGCGGAGGACGATGATTTGGGTGATGATGATAGT
GATGAGGATGATGACGATGAGGATGACGTCATGGATGGGGAAGAGGAAGA
GGACCCATCTCCAGAAACGACAACCACTTCCACTTCCACTTCCACCACCA
CCACAACTGTGAAGCCGTCCTCGGCGCCACCGCTTTACCGCCTCCCCTCC
CATAGTTCCAACGTCTCCTCCCAGAGTTCCAACGCCTCCCCGGAGACGGA
GATCGCTGTCGTCGAGGAGCCCGCGACCGGTAGCGAGGGTGTGGGAAGAC
AGAAGCAATCGTCGGCTTCCGCTCCTCTGTTGGCGTCGTCATCGACGGTT
TCGACTTCCTCGTCGTCCACGGTCTCCTCGGCTTCGTTGTTGTCCCCTTT
GTCCCCTCCCCCCCCTCTCGAACTCTCGGGTCAGACGATCGTTGGAAAAG
GGGTATTGTCGACGTTGAAACCCTTGCCTCTGGCTTCTTCGTCATCGTCA
ACCGCAGTAGGGGCTCTGAAGGAAGTGGGTGTAGGGGCGGCTGTGGGGAA
CGCGAGGCAGGAAGAAGGGGCTGCGGGAAATAGGGAGGCAGGAGAATCGG
CGGGGGTGTCGGATGGACGAGCGCTGAAAAAGGCGGCCACTATGCCGACG
ATACCCAGGGTGTCGCTACTGGCTACTCCCGGAAGCAAGCCCAGGGGTAG
TCGGAAGTGCGTGCAATTTCAGGGGAGAGGCGGCGGAGGCGGCGGCAGCT
CCGACCGCAGGGGCCGCGGCGCGGAACAACAGACCCACGAGTGGTCGGAC
AGCGAATCAATGGAAGATGACAGCTCGGAGAGCGACAGCGCGGAGGACGA
TGATTTGGGTGATGATGATAGTGATGAGGATGATGACGATGAGGATGACG
TCATGGATGGGGAAGAGGAAGAGGACCCATCTCCAGAAACGACAACCACT
TCCACTTCCACTTCCACCACCACCACAACTGTGAAGCCGTCCTCGGCGCC
ACCGCTTTACCGCCTCCCCTCCCATAGTTCCAACGTCTCCTCCCAGAGTT
CCAACGCCTCCCCGGAGACGGAGATCGCTGTCGTCGAGGAGCCCGCGACC
GGTAGCGAGGGTGTGGGAAGACAGAAGCAATCGTCGGCTTCCGCTCCTCT
GTTGGCGTCGTCATCGACGGTTTCGACTTCCTCGTCGTCCACGGTCTCCT
CGGCTTCGTTGTTGTCCCCTTTGTCCCCTCCCCCCCCTCTCGAACTCTCG
GGTCAGACGATCGTTGGAAAAGGGGTATTGTCGACGTTGAAACCCTTGCC
TCTGGCTTCTTCGTCATCGTCAACCGCAGTAGGGGCTCTGAAGGAAGTGG
GTGTAGGGGCGGCTGTGGGGAACGCGAGGCAGGAAGAAGGGGCTGCGGGA
AATAGGGAGGCAGGAGAATCGGCGGGGGTGTCGGATGGACGAGCGCTGAA
AAAGGCGGCCACTATGCCGACGATACCCAGGGTGTCGCTACTGGCTACTC
CCGGAAGCAAGCCCAGGGGTAGTCGGAAGTGCGTGCAATTTCAGGTTCCC
GAGAACGAGGGTCTTGACTCGGACAATTTTGATTCCCCCCTTCCAGAGTT
TTTGTCCAATCCGGACATCAGATTCGAGGTATCGACGGTTCCCGAGAACG
AGGGTCTTGACTCGGACAATTTTGATTCCCCCCTTCCAGAGTTTTTGTCC
AATCCGGACATCAGATTCGAGGTATCGACG
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