mRNA_H-elongata_contig8319.15957.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig8319.15957.1
Unique NamemRNA_H-elongata_contig8319.15957.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig8319.15957.1 vs. uniprot
Match: D8S7C8_SELML (Protein kinase domain-containing protein n=14 Tax=Selaginella moellendorffii TaxID=88036 RepID=D8S7C8_SELML)

HSP 1 Score: 55.5 bits (132), Expect = 2.480e-7
Identity = 25/50 (50.00%), Postives = 34/50 (68.00%), Query Frame = 1
Query:   58 VIRLLQGVATGLGFIHRCGIVHMDLKLENIFLKRRQGGSYTPVIGDFGLA 207
            V  +++ +A  L  +H  GIVH DLKLEN+F K +   + TPVIGDFG+A
Sbjct:   67 VAEIVKELAETLKGVHSSGIVHRDLKLENVFTKLQDASTITPVIGDFGVA 116          
BLAST of mRNA_H-elongata_contig8319.15957.1 vs. uniprot
Match: A0A8J8L0W4_9BACT (Non-specific serine/threonine protein kinase n=1 Tax=Geothrix sp. TaxID=1962974 RepID=A0A8J8L0W4_9BACT)

HSP 1 Score: 55.8 bits (133), Expect = 2.490e-7
Identity = 20/50 (40.00%), Postives = 35/50 (70.00%), Query Frame = 1
Query:   64 RLLQGVATGLGFIHRCGIVHMDLKLENIFLKRRQGGSYTPVIGDFGLADG 213
            R+++ +A G+   H+ G++H+DLKL N+ ++R + G + PVI DFG+  G
Sbjct:  184 RIIRDIAQGIHVAHQKGLIHLDLKLNNVLMERHEDGIFHPVISDFGMVSG 233          
BLAST of mRNA_H-elongata_contig8319.15957.1 vs. uniprot
Match: W0RH02_9BACT (Non-specific serine/threonine protein kinase n=1 Tax=Gemmatirosa kalamazoonesis TaxID=861299 RepID=W0RH02_9BACT)

HSP 1 Score: 55.5 bits (132), Expect = 3.360e-7
Identity = 25/63 (39.68%), Postives = 35/63 (55.56%), Query Frame = 1
Query:   37 HRCVIYAVIRLLQGVATGLGFIHRCGIVHMDLKLENIFLK------RRQGGSYTPVIGDFGLA 207
             R  +   +R+ + VA  LGF H CG++H D+K ENI L       RR  G   P++ DFG+A
Sbjct:  114 ERLPVDEAVRITRDVAEALGFAHECGVIHRDVKPENILLAGHSPDGRRHTGGVRPLVADFGIA 176          
BLAST of mRNA_H-elongata_contig8319.15957.1 vs. uniprot
Match: UPI001FAED77C (serine/threonine protein kinase n=1 Tax=unclassified Geothrix TaxID=2647902 RepID=UPI001FAED77C)

HSP 1 Score: 55.5 bits (132), Expect = 3.400e-7
Identity = 22/46 (47.83%), Postives = 35/46 (76.09%), Query Frame = 1
Query:   67 LLQGVATGLGFIHRCGIVHMDLKLENIFLKRRQGGSYTPVIGDFGL 204
            L++ +A G+   H  G+VH+DLKL N+ L+RR+ G++ PV+GDFG+
Sbjct:  166 LVRELALGVHAAHARGLVHLDLKLGNVLLQRREDGTFRPVVGDFGM 211          
BLAST of mRNA_H-elongata_contig8319.15957.1 vs. uniprot
Match: A0A7S4KEG3_9EUKA (Hypothetical protein n=1 Tax=Paramoeba aestuarina TaxID=180227 RepID=A0A7S4KEG3_9EUKA)

HSP 1 Score: 55.1 bits (131), Expect = 4.470e-7
Identity = 26/51 (50.98%), Postives = 34/51 (66.67%), Query Frame = 1
Query:   58 VIRLLQGVATGLGFIHRCGIVHMDLKLENIFLK-RRQGGSYTPVIGDFGLA 207
            ++ L   +  GL ++H  GI+H DLK +NIFL   +QGGSYT VIGDF  A
Sbjct:  222 IVSLFSDLVDGLEYLHSHGIMHRDLKSDNIFLNFGKQGGSYTAVIGDFDTA 272          
BLAST of mRNA_H-elongata_contig8319.15957.1 vs. uniprot
Match: A0A058ZAU8_FONAL (Serine/threonine protein kinase n=1 Tax=Fonticula alba TaxID=691883 RepID=A0A058ZAU8_FONAL)

HSP 1 Score: 55.1 bits (131), Expect = 4.720e-7
Identity = 28/61 (45.90%), Postives = 35/61 (57.38%), Query Frame = 1
Query:   31 WLHRCVIYAVIRLLQGVATGLGFIHRCGIVHMDLKLENIFLKRRQG--GSYTPVIGDFGLA 207
            W  R      +++   +A GL FIH  G+VH DLK ENIFL+      G   PVIGDFG+A
Sbjct: 2706 WPSRLGPVQTLQMAADIAAGLAFIHSRGVVHKDLKPENIFLRPDPAAPGRLQPVIGDFGVA 2766          
BLAST of mRNA_H-elongata_contig8319.15957.1 vs. uniprot
Match: UPI0018861522 (dual specificity testis-specific protein kinase 2 isoform X1 n=2 Tax=Syngnathus acus TaxID=161584 RepID=UPI0018861522)

HSP 1 Score: 54.7 bits (130), Expect = 6.280e-7
Identity = 24/53 (45.28%), Postives = 34/53 (64.15%), Query Frame = 1
Query:   52 YAVIRLLQGVATGLGFIHRCGIVHMDLKLENIFLKRRQGGSYTPVIGDFGLAD 210
            +A ++L   +A GL ++H  GI H DL  +N  +K   GG YT V+GDFGLA+
Sbjct:  224 HARMKLASDLAGGLAYLHAKGIFHRDLTSKNCLIKCDDGGGYTAVVGDFGLAE 276          
BLAST of mRNA_H-elongata_contig8319.15957.1 vs. uniprot
Match: A0A058ZDG5_FONAL (Serine/threonine protein kinase n=1 Tax=Fonticula alba TaxID=691883 RepID=A0A058ZDG5_FONAL)

HSP 1 Score: 54.3 bits (129), Expect = 8.830e-7
Identity = 27/61 (44.26%), Postives = 35/61 (57.38%), Query Frame = 1
Query:   31 WLHRCVIYAVIRLLQGVATGLGFIHRCGIVHMDLKLENIFLKRRQG--GSYTPVIGDFGLA 207
            W  R      +++   +A G+ FIH  G+VH DLK ENIFL+      G   PVIGDFG+A
Sbjct: 2537 WPSRLSPAQTLQMAADIAAGMAFIHSRGVVHKDLKPENIFLRPDPADPGRLQPVIGDFGVA 2597          
BLAST of mRNA_H-elongata_contig8319.15957.1 vs. uniprot
Match: UPI0004408EB7 (kinase-like protein n=1 Tax=Fomitiporia mediterranea (strain MF3/22) TaxID=694068 RepID=UPI0004408EB7)

HSP 1 Score: 53.1 bits (126), Expect = 9.590e-7
Identity = 27/59 (45.76%), Postives = 37/59 (62.71%), Query Frame = 1
Query:   31 WLHRCVIYAVIRLLQGVATGLGFIHRCGIVHMDLKLENIFLKRRQGGSYTPVIGDFGLA 207
            +L R  +   IR+L GVA GL F+HR G+VH DLK EN+ +      ++ P I DFGL+
Sbjct:   15 YLARQTVSERIRVLTGVADGLSFLHRHGVVHGDLKGENVMIDM----NFEPRIADFGLS 69          
BLAST of mRNA_H-elongata_contig8319.15957.1 vs. uniprot
Match: A0A0H5C671_CYBJN (Protein kinase domain-containing protein n=1 Tax=Cyberlindnera jadinii (strain ATCC 18201 / CBS 1600 / BCRC 20928 / JCM 3617 / NBRC 0987 / NRRL Y-1542) TaxID=983966 RepID=A0A0H5C671_CYBJN)

HSP 1 Score: 53.5 bits (127), Expect = 1.450e-6
Identity = 24/67 (35.82%), Postives = 40/67 (59.70%), Query Frame = 1
Query:    7 SSQPFPPPWLHRCVIYAVIRLLQGVATGLGFIHRCGIVHMDLKLENIFLKRRQGGSYTPVIGDFGLA 207
             S+P    ++    +   + +++GVA GL F+H  G++H D+K +NI     QG + TPVI DFG++
Sbjct:  140 DSRPTTAEYISSLTLEEGVEIIKGVANGLDFLHGLGVIHRDIKPDNIMF---QGYNPTPVIIDFGIS 203          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig8319.15957.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8S7C8_SELML2.480e-750.00Protein kinase domain-containing protein n=14 Tax=... [more]
A0A8J8L0W4_9BACT2.490e-740.00Non-specific serine/threonine protein kinase n=1 T... [more]
W0RH02_9BACT3.360e-739.68Non-specific serine/threonine protein kinase n=1 T... [more]
UPI001FAED77C3.400e-747.83serine/threonine protein kinase n=1 Tax=unclassifi... [more]
A0A7S4KEG3_9EUKA4.470e-750.98Hypothetical protein n=1 Tax=Paramoeba aestuarina ... [more]
A0A058ZAU8_FONAL4.720e-745.90Serine/threonine protein kinase n=1 Tax=Fonticula ... [more]
UPI00188615226.280e-745.28dual specificity testis-specific protein kinase 2 ... [more]
A0A058ZDG5_FONAL8.830e-744.26Serine/threonine protein kinase n=1 Tax=Fonticula ... [more]
UPI0004408EB79.590e-745.76kinase-like protein n=1 Tax=Fomitiporia mediterran... [more]
A0A0H5C671_CYBJN1.450e-635.82Protein kinase domain-containing protein n=1 Tax=C... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig8319contigH-elongata_contig8319:9660..9878 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size219
Cds size219
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931239.363679-CDS-H-elongata_contig8319:9659..98781622931239.363679-CDS-H-elongata_contig8319:9659..9878Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig8319 9660..9878 -
1691679755.4274359-CDS-H-elongata_contig8319:9659..98781691679755.4274359-CDS-H-elongata_contig8319:9659..9878Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig8319 9660..9878 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig8319.15957.1prot_H-elongata_contig8319.15957.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig8319 9660..9878 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig8319.15957.1

>prot_H-elongata_contig8319.15957.1 ID=prot_H-elongata_contig8319.15957.1|Name=mRNA_H-elongata_contig8319.15957.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=73bp
MFSSQPFPPPWLHRCVIYAVIRLLQGVATGLGFIHRCGIVHMDLKLENIF
LKRRQGGSYTPVIGDFGLADGE*
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mRNA from alignment at H-elongata_contig8319:9660..9878-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig8319.15957.1 ID=mRNA_H-elongata_contig8319.15957.1|Name=mRNA_H-elongata_contig8319.15957.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=219bp|location=Sequence derived from alignment at H-elongata_contig8319:9660..9878- (Himanthalia elongata Himel1 dioecious)
ATGTTCTCTTCTCAGCCTTTCCCCCCCCCCTGGCTCCATCGATGTGTTAT ATATGCCGTCATTAGGCTCCTGCAGGGTGTCGCCACGGGGCTGGGATTTA TACACCGCTGTGGTATCGTCCACATGGACTTAAAGTTGGAAAATATTTTT CTAAAACGCCGCCAGGGCGGAAGCTACACACCGGTGATCGGTGACTTTGG ACTAGCAGATGGTGAGTGA
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Coding sequence (CDS) from alignment at H-elongata_contig8319:9660..9878-

>mRNA_H-elongata_contig8319.15957.1 ID=mRNA_H-elongata_contig8319.15957.1|Name=mRNA_H-elongata_contig8319.15957.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=438bp|location=Sequence derived from alignment at H-elongata_contig8319:9660..9878- (Himanthalia elongata Himel1 dioecious)
ATGTTCTCTTCTCAGCCTTTCCCCCCCCCCTGGCTCCATCGATGTGTTAT
ATATGCCGTCATTAGGCTCCTGCAGGGTGTCGCCACGGGGCTGGGATTTA
TACACCGCTGTGGTATCGTCCACATGGACTTAAAGTTGGAAAATATTTTT
CTAAAACGCCGCCAGGGCGGAAGCTACACACCGGTGATCGGTGACTTTGG
ACTAGCAGATGGTGAGTGAATGTTCTCTTCTCAGCCTTTCCCCCCCCCCT
GGCTCCATCGATGTGTTATATATGCCGTCATTAGGCTCCTGCAGGGTGTC
GCCACGGGGCTGGGATTTATACACCGCTGTGGTATCGTCCACATGGACTT
AAAGTTGGAAAATATTTTTCTAAAACGCCGCCAGGGCGGAAGCTACACAC
CGGTGATCGGTGACTTTGGACTAGCAGATGGTGAGTGA
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