mRNA_H-elongata_contig83173.15955.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig83173.15955.1
Unique NamemRNA_H-elongata_contig83173.15955.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig83173.15955.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig83173contigH-elongata_contig83173:709..1072 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Model size158
Cds size156
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931238.8701725-CDS-H-elongata_contig83173:708..7861622931238.8701725-CDS-H-elongata_contig83173:708..786Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig83173 709..786 -
1691679755.0637908-CDS-H-elongata_contig83173:708..7861691679755.0637908-CDS-H-elongata_contig83173:708..786Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig83173 709..786 -
1622931238.8877828-CDS-H-elongata_contig83173:994..10721622931238.8877828-CDS-H-elongata_contig83173:994..1072Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig83173 995..1072 -
1691679755.0813107-CDS-H-elongata_contig83173:994..10721691679755.0813107-CDS-H-elongata_contig83173:994..1072Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig83173 995..1072 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig83173.15955.1prot_H-elongata_contig83173.15955.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig83173 709..1072 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig83173.15955.1

>prot_H-elongata_contig83173.15955.1 ID=prot_H-elongata_contig83173.15955.1|Name=mRNA_H-elongata_contig83173.15955.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=52bp
ENRPENFLLRFSKSRPGRFVLMYRDKMSERQIKQYFITVCQGGLWTLHYG
SD
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mRNA from alignment at H-elongata_contig83173:709..1072-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig83173.15955.1 ID=mRNA_H-elongata_contig83173.15955.1|Name=mRNA_H-elongata_contig83173.15955.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=364bp|location=Sequence derived from alignment at H-elongata_contig83173:709..1072- (Himanthalia elongata Himel1 dioecious)
GAGAATCGTCCTGAGAATTTCCTGCTGCGGTTCAGCAAATCGCGCCCGGG
GCGTTTCGTACTGATGTACAGAGACAAGGTGCGCAATTGTTTGTTTTTGT
TTTCTTTGCCTGAGAACGGCCAGCGAGGAAAAAGTTACACCTCGATCGGA
CGTGGCAACTCGAAATCGATCGAATACTCTGCTCGAACTAGTGCGCATAA
ATTGTTGTGAACCTCTGGCTCAAAAGTGATGCTCTTCGTTAACCCACCCC
CTTGGTGCTTTTCGACGCCGCTCAAATATACCACAGATGTCTGAGAGGCA
GATCAAGCAATATTTTATTACTGTGTGCCAGGGTGGGTTGTGGACGTTGC
ACTACGGCAGCGAC
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Coding sequence (CDS) from alignment at H-elongata_contig83173:709..1072-

>mRNA_H-elongata_contig83173.15955.1 ID=mRNA_H-elongata_contig83173.15955.1|Name=mRNA_H-elongata_contig83173.15955.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=312bp|location=Sequence derived from alignment at H-elongata_contig83173:709..1072- (Himanthalia elongata Himel1 dioecious)
GAGAATCGTCCTGAGAATTTCCTGCTGCGGTTCAGCAAATCGCGCCCGGG
GCGTTTCGTACTGATGTACAGAGACAAGGAGAATCGTCCTGAGAATTTCC
TGCTGCGGTTCAGCAAATCGCGCCCGGGGCGTTTCGTACTGATGTACAGA
GACAAGATGTCTGAGAGGCAGATCAAGCAATATTTTATTACTGTGTGCCA
GGGTGGGTTGTGGACGTTGCACTACGGCAGCGACATGTCTGAGAGGCAGA
TCAAGCAATATTTTATTACTGTGTGCCAGGGTGGGTTGTGGACGTTGCAC
TACGGCAGCGAC
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