mRNA_H-elongata_contig83134.15949.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig83134.15949.1
Unique NamemRNA_H-elongata_contig83134.15949.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig83134.15949.1 vs. uniprot
Match: D7FKI5_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FKI5_ECTSI)

HSP 1 Score: 82.0 bits (201), Expect = 6.530e-18
Identity = 36/57 (63.16%), Postives = 47/57 (82.46%), Query Frame = 1 
Query:    4 IHVPDIIHSTVMRVASEVEDTRSLAAGLAEVSGQWKPATVKVAEITLVHEKHPYMHL 174
            +H+P+IIHSTVMRVASEV D   L  GLA++  +W+P TV+V +I+LV+EKHPYMHL
Sbjct:  135 VHIPNIIHSTVMRVASEVSDEGRLGEGLADLGARWEPTTVRVGKISLVYEKHPYMHL 191
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BLAST of mRNA_H-elongata_contig83134.15949.1 vs. uniprot
Match: A0A0M0J9H0_9EUKA (Uncharacterized protein n=1 Tax=Chrysochromulina tobinii TaxID=1460289 RepID=A0A0M0J9H0_9EUKA)

HSP 1 Score: 50.8 bits (120), Expect = 6.370e-6
Identity = 22/56 (39.29%), Postives = 33/56 (58.93%), Query Frame = 1 
Query:    7 HVPDIIHSTVMRVASEVEDTRSLAAGLAEVSGQWKPATVKVAEITLVHEKHPYMHL 174
            H+PDI+HST++R  +E +D  + A   A V+  W P  + V     V E+ PYMH+
Sbjct:  177 HIPDIVHSTLVRWTAEPDDRAAAAEAFARVAQSWTPLELTVPRAIAVFERLPYMHM 232
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BLAST of mRNA_H-elongata_contig83134.15949.1 vs. uniprot
Match: A0A1Q9ETY8_SYMMI (Fibronectin type-III domain-containing protein n=3 Tax=Symbiodinium TaxID=2949 RepID=A0A1Q9ETY8_SYMMI)

HSP 1 Score: 48.1 bits (113), Expect = 6.920e-5
Identity = 22/58 (37.93%), Postives = 32/58 (55.17%), Query Frame = 1 
Query:    1 AIHVPDIIHSTVMRVASEVEDTRSLAAGLAEVSGQWKPATVKVAEITLVHEKHPYMHL 174
            A H+PDI+HSTV+R  +E  D  +     A+V+  W+P  +       V E  PYMH+
Sbjct:  476 APHIPDIVHSTVLRWTAEPADRAAAQEAFAQVAESWEPVEIIATAPRAVFEDIPYMHI 533
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BLAST of mRNA_H-elongata_contig83134.15949.1 vs. uniprot
Match: A0A813E1X2_POLGL (Hypothetical protein n=1 Tax=Polarella glacialis TaxID=89957 RepID=A0A813E1X2_POLGL)

HSP 1 Score: 46.6 bits (109), Expect = 9.230e-5
Identity = 22/58 (37.93%), Postives = 31/58 (53.45%), Query Frame = 1 
Query:    1 AIHVPDIIHSTVMRVASEVEDTRSLAAGLAEVSGQWKPATVKVAEITLVHEKHPYMHL 174
            A H+PDI+HSTV+R  +  ED  +       ++  W+P  V V     V E  PYMH+
Sbjct:   62 APHLPDIVHSTVLRWTAAPEDAVAAREAFERIAASWEPLQVAVPFARWVFEDTPYMHI 119
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig83134.15949.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
D7FKI5_ECTSI6.530e-1863.16Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A0M0J9H0_9EUKA6.370e-639.29Uncharacterized protein n=1 Tax=Chrysochromulina t... [more]
A0A1Q9ETY8_SYMMI6.920e-537.93Fibronectin type-III domain-containing protein n=3... [more]
A0A813E1X2_POLGL9.230e-537.93Hypothetical protein n=1 Tax=Polarella glacialis T... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig83134contigH-elongata_contig83134:395..568 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-12_001940.1
Exons1
Model size174
Cds size174
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931238.4583857-CDS-H-elongata_contig83134:394..5681622931238.4583857-CDS-H-elongata_contig83134:394..568Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig83134 395..568 -
1691679754.9071257-CDS-H-elongata_contig83134:394..5681691679754.9071257-CDS-H-elongata_contig83134:394..568Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig83134 395..568 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig83134.15949.1prot_H-elongata_contig83134.15949.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig83134 395..568 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig83134.15949.1

>prot_H-elongata_contig83134.15949.1 ID=prot_H-elongata_contig83134.15949.1|Name=mRNA_H-elongata_contig83134.15949.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=58bp
AIHVPDIIHSTVMRVASEVEDTRSLAAGLAEVSGQWKPATVKVAEITLVH
EKHPYMHL
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mRNA from alignment at H-elongata_contig83134:395..568-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig83134.15949.1 ID=mRNA_H-elongata_contig83134.15949.1|Name=mRNA_H-elongata_contig83134.15949.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=174bp|location=Sequence derived from alignment at H-elongata_contig83134:395..568- (Himanthalia elongata Himel1 dioecious)
GCAATCCACGTGCCTGACATCATACACTCGACGGTGATGCGAGTTGCGTC
TGAGGTCGAGGACACGAGATCTCTGGCAGCGGGCTTGGCTGAAGTCAGCG
GCCAGTGGAAGCCTGCCACGGTTAAGGTTGCGGAGATCACCCTTGTCCAC
GAAAAACACCCGTACATGCATCTA
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Coding sequence (CDS) from alignment at H-elongata_contig83134:395..568-

>mRNA_H-elongata_contig83134.15949.1 ID=mRNA_H-elongata_contig83134.15949.1|Name=mRNA_H-elongata_contig83134.15949.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=348bp|location=Sequence derived from alignment at H-elongata_contig83134:395..568- (Himanthalia elongata Himel1 dioecious)
GCAATCCACGTGCCTGACATCATACACTCGACGGTGATGCGAGTTGCGTC
TGAGGTCGAGGACACGAGATCTCTGGCAGCGGGCTTGGCTGAAGTCAGCG
GCCAGTGGAAGCCTGCCACGGTTAAGGTTGCGGAGATCACCCTTGTCCAC
GAAAAACACCCGTACATGCATCTAGCAATCCACGTGCCTGACATCATACA
CTCGACGGTGATGCGAGTTGCGTCTGAGGTCGAGGACACGAGATCTCTGG
CAGCGGGCTTGGCTGAAGTCAGCGGCCAGTGGAAGCCTGCCACGGTTAAG
GTTGCGGAGATCACCCTTGTCCACGAAAAACACCCGTACATGCATCTA
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