mRNA_H-elongata_contig8311.15948.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig8311.15948.1
Unique NamemRNA_H-elongata_contig8311.15948.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig8311.15948.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig8311contigH-elongata_contig8311:8080..9497 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-04_002750.1
Exons2
Model size1192
Cds size438
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig8311.15948.1prot_H-elongata_contig8311.15948.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig8311 8152..8815 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931238.355319-UTR-H-elongata_contig8311:8079..81511622931238.355319-UTR-H-elongata_contig8311:8079..8151Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig8311 8080..8151 +
1691679754.876-UTR-H-elongata_contig8311:8079..81511691679754.876-UTR-H-elongata_contig8311:8079..8151Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig8311 8080..8151 +
1622931238.407668-UTR-H-elongata_contig8311:8815..94971622931238.407668-UTR-H-elongata_contig8311:8815..9497Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig8311 8816..9497 +
1691679754.8993413-UTR-H-elongata_contig8311:8815..94971691679754.8993413-UTR-H-elongata_contig8311:8815..9497Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig8311 8816..9497 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931238.375249-CDS-H-elongata_contig8311:8151..83121622931238.375249-CDS-H-elongata_contig8311:8151..8312Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig8311 8152..8312 +
1691679754.8837514-CDS-H-elongata_contig8311:8151..83121691679754.8837514-CDS-H-elongata_contig8311:8151..8312Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig8311 8152..8312 +
1622931238.390779-CDS-H-elongata_contig8311:8538..88151622931238.390779-CDS-H-elongata_contig8311:8538..8815Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig8311 8539..8815 +
1691679754.8916655-CDS-H-elongata_contig8311:8538..88151691679754.8916655-CDS-H-elongata_contig8311:8538..8815Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig8311 8539..8815 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig8311.15948.1

>prot_H-elongata_contig8311.15948.1 ID=prot_H-elongata_contig8311.15948.1|Name=mRNA_H-elongata_contig8311.15948.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=146bp
MSLSLTMSCGWCRASGCLLLLAALARRSCFGFVINQPSFPTASRLQIADA
PVRRVTRVNMMGSKTTPPADSVVRSRAAFLRGAFGAAAVLSTVVATPRET
PAIELGRELITPAGVAERISFLVTSVVRHVQSSTSGLYIGWADAS*
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mRNA from alignment at H-elongata_contig8311:8080..9497+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig8311.15948.1 ID=mRNA_H-elongata_contig8311.15948.1|Name=mRNA_H-elongata_contig8311.15948.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1418bp|location=Sequence derived from alignment at H-elongata_contig8311:8080..9497+ (Himanthalia elongata Himel1 dioecious)
TCCTGGTCTTAAGAACAAAAGAGGCAACCTGCTGTCTTCTCCAAAACTGG
TTTGCGTGTGGCATCCGGCTATATGTCTCTCTCGTTGACAATGTCTTGTG
GGTGGTGTCGTGCGTCTGGATGCTTGCTGCTGCTTGCCGCCCTCGCTAGA
CGCTCCTGCTTCGGGTTCGTGATCAACCAGCCAAGCTTCCCCACCGCCTC
GAGGTTGCAGATCGCTGATGCTCCTGTTCGCAGGCAAGAATCCAAAACAC
ATTCGGGATCGCTTTTAAAGTCCAAAAACGAGGAAACCTTGGCTGGTAAA
GGTTCTGATATTGGTCCACAGCACGATAGTCTCGTCTCAGGCCATGTTAT
GATATATTTCCCCCCAAATTTTGTTTCTGAAATAAGAAATAATGATCCTG
CTTCCATTCTCCTTTTTATCGTTTTTTGTGTACTGTGGTTGTTATTGAGA
TTGTTTCAGAGTGACACGTGTCAATATGATGGGTTCAAAGACCACACCTC
CTGCTGACTCGGTGGTTCGGAGCAGAGCCGCTTTCCTGAGAGGAGCTTTT
GGAGCGGCCGCTGTGCTGTCCACGGTGGTAGCTACACCAAGGGAGACGCC
AGCTATTGAACTAGGCCGTGAGTTGATCACGCCTGCGGGAGTGGCAGAGC
GCATAAGTTTCCTGGTGACAAGCGTAGTAAGGCATGTTCAATCATCAACC
AGCGGACTGTATATAGGCTGGGCTGACGCATCGTAAAGAGCGTGGCGTAC
AAGTACATACGTGCCTTCCACGCAGCCTCTGACTCGCCGTCGAAGGCACC
ACGCTGTAAGCTGATCAGAGGATTGAACGAAGACGATGTTCCGGGTGTGG
GCTTGATCTTGTCTAGACCGGTTCCGTTTTTCGATCAACCGTTGCCTACC
CGTTTGTTGGTCAACCATTATTGAACCGTTTGCAGTGTTTACAAACTGAG
TCACTACTCTGTTGCTACAGCTTCTATGGATGCAAGGCTGTGGAATTATC
GTCGGAAGAAGAGTTTTTGTCACACTTCCTGACTGCACGGCCTTTGATGA
GGGGACGAATATCGCACTCGTATCACACAGGAATCGCCGGTTTGGGTTTA
GTGGATCAACGACCGATTGTGTCAGTCGCAGGATCTTCGTCTGGGTAACT
GCACGAAACGTTCAGGCCGCATTCGGGCTGATTTTTTTCCCGGTTGGATC
TTCCCGGCAAGCCTGCGGATTGCTCAGCCGCGAAACAAAGTTGTCTCGGA
AATATTTGATAAGACATATTCAAAAGCGGTACTGTATCTAATTATATTAC
AGTAGAGCTCTAGGCTCTAGTGACAAAGCACGCGTAAGTTATGTCTACCC
TTAGTATAGTAGCTTGTGCGTTCTATCTCCCAAGAAAGGCAATCCGCGGG
AATCCCCTGATTCGGGAG
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Coding sequence (CDS) from alignment at H-elongata_contig8311:8080..9497+

>mRNA_H-elongata_contig8311.15948.1 ID=mRNA_H-elongata_contig8311.15948.1|Name=mRNA_H-elongata_contig8311.15948.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=876bp|location=Sequence derived from alignment at H-elongata_contig8311:8080..9497+ (Himanthalia elongata Himel1 dioecious)
ATGTCTCTCTCGTTGACAATGTCTTGTGGGTGGTGTCGTGCGTCTGGATG
CTTGCTGCTGCTTGCCGCCCTCGCTAGACGCTCCTGCTTCGGGTTCGTGA
TCAACCAGCCAAGCTTCCCCACCGCCTCGAGGTTGCAGATCGCTGATGCT
CCTGTTCGCAGATGTCTCTCTCGTTGACAATGTCTTGTGGGTGGTGTCGT
GCGTCTGGATGCTTGCTGCTGCTTGCCGCCCTCGCTAGACGCTCCTGCTT
CGGGTTCGTGATCAACCAGCCAAGCTTCCCCACCGCCTCGAGGTTGCAGA
TCGCTGATGCTCCTGTTCGCAGAGTGACACGTGTCAATATGATGGGTTCA
AAGACCACACCTCCTGCTGACTCGGTGGTTCGGAGCAGAGCCGCTTTCCT
GAGAGGAGCTTTTGGAGCGGCCGCTGTGCTGTCCACGGTGGTAGCTACAC
CAAGGGAGACGCCAGCTATTGAACTAGGCCGTGAGTTGATCACGCCTGCG
GGAGTGGCAGAGCGCATAAGTTTCCTGGTGACAAGCGTAGTAAGGCATGT
TCAATCATCAACCAGCGGACTGTATATAGGCTGGGCTGACGCATCGTAAA
GTGACACGTGTCAATATGATGGGTTCAAAGACCACACCTCCTGCTGACTC
GGTGGTTCGGAGCAGAGCCGCTTTCCTGAGAGGAGCTTTTGGAGCGGCCG
CTGTGCTGTCCACGGTGGTAGCTACACCAAGGGAGACGCCAGCTATTGAA
CTAGGCCGTGAGTTGATCACGCCTGCGGGAGTGGCAGAGCGCATAAGTTT
CCTGGTGACAAGCGTAGTAAGGCATGTTCAATCATCAACCAGCGGACTGT
ATATAGGCTGGGCTGACGCATCGTAA
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