mRNA_H-elongata_contig8310.15946.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig8310.15946.1
Unique NamemRNA_H-elongata_contig8310.15946.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig8310.15946.1 vs. uniprot
Match: A0A6H5JA60_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JA60_9PHAE)

HSP 1 Score: 280 bits (716), Expect = 7.930e-81
Identity = 154/378 (40.74%), Postives = 224/378 (59.26%), Query Frame = 2 
Query:    5 NTQFLDASNSSCNEIWRSWPSIQPQATVNGTFIVFKLFASIGNLFITLKTLLSVVRFLEVGLVLDYQNSFPGFKQAFEPSEIIWDVDPAPLMNLALEIEKGS-VSGFHASTFNDGAIVISDAQLNHLILTLNIPASTLPEVIVSVMAGTNKSPGLRTVLAKTSSDLLHRGYVNTEPCAWNMLLRRSPLLLESLEINSPWTSKGAEFESGGQSAKFIAWHIRTPSGESKTSYSPSIHTYILQ-QPAEVVCPAFELATETTRTSCPDLLPSD---LEIYISSNSKDLARICIDELTEHGIQGGHVDMGLGPEDAHTQFSKHPDA-AMNAFLDFMFLMDAEVIVRSKSSFSGTVVGMRAMTC-VISPVPGLSQPHLYVCSP 1117
            N +F+  +   C+ +W SWP++Q  A  NGT +VF +F S+GNLFITL  L+   R LEV L L + + FPGF+ AF+ + I WD+DP  ++  A E+  G+ V   +   F+DG +V+S  QL  L +   IP ++L E+ V+V    +        L + S  +     V  E CAWNMLLRRSP ++ SLE ++PWT  G     G +   ++AWH+RT  GES+ S++P +HTYIL  Q +  V P F  AT+     CP +   D   + +YISSNSK +AR C     EH +  G VD+G+   DAHT FSK+P+A A+NAF+D+++LMD+ VI+++ SSFS TV  ++++ C  +   P L    L VC P
Sbjct:  183 NDRFVHTTGDDCHPLWTSWPAVQEAAIANGTVLVFDIFPSVGNLFITLGNLIKTARLLEVALFLKW-DKFPGFRAAFDTASIKWDLDPTTVVQKAEELTLGAEVDRLYPLKFSDGNLVLSSQQLEALAIQTGIPDTSLAEMAVAVKERWSS-------LRRLSQAIAGSAVVPPETCAWNMLLRRSPSMIASLEAHNPWTPSGF----GPRPKDYVAWHVRTSDGESEHSFNPDVHTYILHGQSSTTVVPIFLSATDAAEKMCPKMFHEDAPKMPVYISSNSKSMARNCTALAAEHDVTAGFVDLGIDDLDAHTTFSKNPNATALNAFIDYLYLMDSSVIIQTGSSFSSTVARVKSLKCREVEHPPELPVKRLNVCLP 548
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BLAST of mRNA_H-elongata_contig8310.15946.1 vs. uniprot
Match: A0A6H5L1Z7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L1Z7_9PHAE)

HSP 1 Score: 259 bits (663), Expect = 2.250e-75
Identity = 145/378 (38.36%), Postives = 221/378 (58.47%), Query Frame = 2 
Query:   17 LDASNSSCNEIWRSWPSIQPQATVNGTFIVFKLFASIGNLFITLKTLLSVVRFLEVGLVLDYQNSFPGFKQAFEPSEIIWDVDPAPLMNLALEIEKGS-VSGFHASTFNDGAIVISDAQLNHLILTLNIPASTLPEVIVSVMAGTNKSPGLRTVLAKTSSDLLHRGYVNTEPCAWNMLLRRSPLLLESLEINSPWTSKGAEFESGGQSAKFIAWHIRTPSGESKTSYSPSIHTYIL-QQPAEVVCPAFELATETTRTSCPDLLPSDLEI---YISSNSKDLARICI----DELTEHGIQGGHVDMGLGPEDAHTQFSKHPDA-AMNAFLDFMFLMDAEVIVRSKSSFSGTVVGMRAMTCV-ISPVPGLSQPHLYVCSP 1117
            +  ++  C+  W SWPS+Q  A   GT +VF +F S+GN+F+ L  ++   R LEV L+L++Q  F GF++AF+P+ I WD+D   L+  A    +G+     +  TF DG +V+S  QL  +   + +P +++ E+  ++  G +K  GL     + S + +     +  PCAWNMLLRRSP ++ SLE ++PW +     E   +  K++AWHIRT  GE+  S++P +HTYI  +Q +  V P F  AT+     CP     D+ I   YISSNSK +AR C         EH +  G VD+G+   DAHT FSK+P A A+NAF+D+++LMD+ +IV++ SSFS TV  ++ M+C  ++   GL   +L VC P
Sbjct:    1 MSTTDDDCDSTWSSWPSVQEAAVARGTVVVFNVFPSVGNMFVILHNIIKTARLLEVALLLNWQR-FEGFREAFDPASIKWDLDQPTLVQQAAPRSQGAEAERLYPFTFPDGQMVLSHWQLETIARKVGLPGTSVDEMAAALEEGYSKIGGL----GRLSRETVQNERFSVLPCAWNMLLRRSPAMMASLEAHNPWMTH----EFNPRPKKYVAWHIRTSHGETNGSFTPHVHTYIFHRQSSTSVLPIFLSATDAAERMCPRFFDQDVPITPVYISSNSKTMARNCTVLAATLAAEHKVGPGFVDLGIDDVDAHTTFSKNPKATALNAFIDYLYLMDSSIIVQTGSSFSFTVASIKGMSCHGVAKPEGLPVKNLNVCLP 369
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BLAST of mRNA_H-elongata_contig8310.15946.1 vs. uniprot
Match: A0A6H5JS37_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JS37_9PHAE)

HSP 1 Score: 249 bits (636), Expect = 4.110e-69
Identity = 149/376 (39.63%), Postives = 215/376 (57.18%), Query Frame = 2 
Query:   32 SSCNEIWRSWPSIQPQATVNGTFIVFKLFASIGNLFITLKTLLSVVRFLEVGLVLDYQNSFPGFKQAFEPSEIIWDVDPAPLMNLALEIEKG-SVSGFHASTFNDGAIVISDAQLNHLILTLNIPASTLPEVIVSVMAGTNKSPGLRTVLAKTSSDLLHRGYVNTEPCAWNMLLRRSPLLLESLEINSPWTSKGAEFESGGQSAKFIAWHIRTPSGESKTSYSPSIHTYILQQ-PAEVVCPAFELATETTRTSCPDLLPSD---LEIYISSNSKDLARICIDELTEHGIQGGHVDMGLGPEDAHTQFSKHPD-AAMNAFLDFMFLMDAEVIVRSKSSFSGTVVGMRAMTC------VISPVPGLSQPHLYVCSPRG 1123
            S C+E+WR+WP++Q  A  NGT +VF L + +GN F+ L+ ++ V R+LE+GLV++++  F GF+ AF+  E+ WD+D  P    A EI +G + SGFH   F DG +V+ D QL  L   + I A   P+ ++  +            +    S  L  G   ++PC WNM +RRS  ++  LE  +PW  +G+   S  +  K+IA+ IRT  GE+  S+ P IHTYI     + VVC  +  ATE  + +CP    +D   + ++ISSNS  +AR C  E     +  G VD+G+   DAHT FS HP  AA+ AF+DF+F++DAEV+VR+ SSFSGT V M+ M C      V  P+ GL     YVC P G
Sbjct:  221 SECDELWRTWPAMQESAIANGTVVVFDLVSRVGNAFMDLRNIIQVARWLELGLVINWKG-FQGFRDAFDTGELKWDIDTEPFRRRAKEISRGVNPSGFHLFRFYDGFMVLCDHQLTMLASKVGI-AIQHPDAMMLQLKKV-----FPVKIRYWISGGLQNGLPASQPCTWNMFVRRSAAMMRRLEAYNPWRVEGS---SMSRFQKYIAFQIRTTEGETAGSFDPKIHTYIFNNLRSTVVCNWYFAATEEAKGACPAAFNADEGDVPLFISSNSMSMARNCSAEAAGRKMLPGLVDVGVPVGDAHTTFSAHPKIAALKAFVDFLFILDAEVVVRTASSFSGTAVEMKGMNCFEAKVSVEMPISGL-----YVCVPAG 581
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BLAST of mRNA_H-elongata_contig8310.15946.1 vs. uniprot
Match: A0A6H5KDJ4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KDJ4_9PHAE)

HSP 1 Score: 206 bits (524), Expect = 1.930e-56
Identity = 124/321 (38.63%), Postives = 181/321 (56.39%), Query Frame = 2 
Query:  176 LEVGLVLDYQNSFPGFKQAFEPSEIIWDVDPAPLMNLALEIEKG-SVSGFHASTFNDGAIVISDAQLNHLILTLNIPASTLPEVIVSVMAGTNKS--PGLRTVLAKTSSDLLHRGYVNTEPCAWNMLLRRSPLLLESLEINSPWTSKGAEFESGGQSAKFIAWHIRTPSGESKTSYSPSIHTYILQQPA-EVVCPAFELATETTRTSCPDLLP-SDLEIYISSNSKDLARICIDELTEHGIQGGHVDMGLGPEDAHTQFSKHPDAAMNAFLDFMFLMDAEVIVRSKSSFSGTVVGMRAMTCVISPVPGLS--QPHLYVCSP 1117
            LEV L+++  + FP F+ AFEP  I WD+D  P      EI KG      HA  F DG +++SD QL  +  +  + + T       + AG  K+     R  LA  + DL         PCAWNM+LRRSP ++ S+E ++PW + G   +S    A + AWHIRT  GE++ S+S     YI    A + +CP F    E +  +CP     +D  +YISSNSK  AR C  E  +  I+   VD+G+  +DAHT FSK+PD  +NAF+DF++LMDA++IVR+ SSFSG ++ +++  C+ + +  L   + HL+VC P
Sbjct:    2 LEVALIINL-DQFPAFRVAFEPEVIKWDLDTEPFKLRGGEISKGVDAEDRHALQFLDGFLIVSDHQLEVMSASFGVGSGTHS----GIKAGFRKAFKNRWRHYLATANLDL-------APPCAWNMVLRRSPTMMNSMEAHTPWVTAG---DSPRAHAHYHAWHIRTSEGETERSFSKQ--RYIFNNVASQSICPMFVSTREASEEACPSRFSGNDSPVYISSNSKSTARNCSAEARKKDIETAFVDLGINAQDAHTAFSKNPDTVVNAFIDFLYLMDADIIVRTASSFSGAIIDIKSYRCMDAYLGKLPVFRMHLFVCVP 305
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BLAST of mRNA_H-elongata_contig8310.15946.1 vs. uniprot
Match: A0A6H5JUR5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUR5_9PHAE)

HSP 1 Score: 172 bits (436), Expect = 2.170e-45
Identity = 92/216 (42.59%), Postives = 134/216 (62.04%), Query Frame = 2 
Query:  488 SSDLLHRGYVNTEPCAWNMLLRRSPLLLESLEINSPWTSKGAEFESGGQSAKFIAWHIRTPSGESKTSYSPSIHTYILQ-QPAEVVCPAFELATETTRTSCPDLLPSDLEI---YISSNSKDLARICIDELTEHGIQGGHVDMGLGPEDAHTQFSKHPDA-AMNAFLDFMFLMDAEVIVRSKSSFSGTVVGMRAMTCVISP-VPGLSQPHLYVCSP 1117
            S D++     + + CAWNMLLRRS  ++ SL+ N+PWT  G     G + A+++AWHIRT +GE+K S+SP +H YI   Q +  V P F  AT     +CP L   ++ I   YISSNSK ++R C     E+ IQ G VD+G+   DAHT +S +PDA A+NAF+D+++LMD+ +IV++ SSF+ TV  ++  +C  +P   G     LY+C P
Sbjct:    5 SRDIVRNSPDSLQACAWNMLLRRSHSIMASLDANNPWTPAGF----GSRPAEYVAWHIRTSNGETKESFSPDVHQYIFNGQTSAAVFPLFLSATSFAEKACPKLYHDNIPIMPVYISSNSKTMSRNCTALAAENKIQSGFVDLGIADSDAHTGYSANPDATALNAFIDYLYLMDSSIIVQTGSSFAFTVASIKGTSCRGAPKTKGAPVRSLYICLP 216
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BLAST of mRNA_H-elongata_contig8310.15946.1 vs. uniprot
Match: D8LBV4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LBV4_ECTSI)

HSP 1 Score: 173 bits (438), Expect = 2.270e-42
Identity = 105/284 (36.97%), Postives = 159/284 (55.99%), Query Frame = 2 
Query:   32 SSCNEIWRSWPSIQPQATVNGTFIVFKLFASIGNLFITLKTLLSVVRFLEVGLVLDYQNSFPGFKQAFEPSEIIWDVDPAPLMNLALEIEKG-SVSGFHASTFNDGAIVISDAQLNHLILTLNIPASTLPEVIVSVMAGTNKSPGLRTVLAKTSSDLLHRGYVNTEPCAWNMLLRRSPLLLESLEINSPWTSKGAEFESGGQSAKFIAWHIRTPSGESKTSYSPSIHTYILQQ-PAEVVCPAFELATETTRTSCPDLLPSD---LEIYISSNSKDLAR-ICIDE 865
            S C+E+WR+WP++Q  A  NGT +VF L + +GN F+ L+ ++ V R+LE+GLV++++  F GF+ AF+  E+ WD+D  P    A  I +G + SGFH   F DG +V+ D QL  L   + I A   P+ +V  +            +    S  L  G   ++PC WNM ++RS  ++ SLE+ +PW  +G+   S  +  K++A+ IRT  GE+  S+ P IHTYI     + VVC  +  ATE  +  CP    +D   + ++ISSNS  L R  C DE
Sbjct:  221 SECDELWRTWPAMQESAIANGTVVVFDLVSRVGNAFMDLRNIIQVARWLELGLVVNWKG-FQGFRDAFDTGELKWDIDTEPFRRRAKAISRGVNPSGFHLFWFYDGFMVLCDHQLTMLASKMGI-AIQHPDAMVLQLKKV-----FPVKIRYWISGRLQNGLPASQPCTWNMFVKRSASMMRSLEVYNPWRVEGS---SMSRFQKYVAFQIRTTEGETAGSFDPKIHTYIFNNLRSTVVCNWYFTATEEAKGVCPAAFNADEGDVPLFISSNSIVLLRHSCSDE 494
[Close]
BLAST of mRNA_H-elongata_contig8310.15946.1 vs. uniprot
Match: A0A6H5JBZ2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JBZ2_9PHAE)

HSP 1 Score: 86.3 bits (212), Expect = 1.580e-16
Identity = 44/102 (43.14%), Postives = 65/102 (63.73%), Query Frame = 2 
Query:  818 YISSNSKDLARICIDELTEHGIQGGHVDMGLGPEDAHTQFSKHPDA-AMNAFLDFMFLMDAEVIVRSKSSFSGTVVGMRAMTC-VISPVPGLSQPHLYVCSP 1117
            +  S SK +AR C     EH +  G VD+G+   DAHT FSK+P+A A+NAF+D+++LMD+ VI+++ SSFS TV  ++++ C  +   P L    L VC P
Sbjct:    5 FFRSRSKSMARNCTALAAEHDVTAGFVDLGIDDLDAHTTFSKNPNATALNAFIDYLYLMDSSVIIQTGSSFSSTVARVKSLKCREVEHPPELPVKRLNVCLP 106
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BLAST of mRNA_H-elongata_contig8310.15946.1 vs. uniprot
Match: D7G5J4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G5J4_ECTSI)

HSP 1 Score: 81.3 bits (199), Expect = 3.450e-14
Identity = 44/104 (42.31%), Postives = 60/104 (57.69%), Query Frame = 2 
Query:  527 PCAWNMLLRRSPLLLESLEINSPWTSKGAEFESGGQSAKFIAWHIRTPSGESKTSYSPSIHTYILQQPA-EVVCPAFELATETTRTSCPDLLPS-DLEIYISSN 832
            PCAWNM+LRRSP ++ S+E ++PW + G   +S    A + AWHIRT  GE++ S+S     YI    A E +CP F    E +  +CP      D  +YISSN
Sbjct:   41 PCAWNMVLRRSPTMMNSMEAHTPWVTVG---DSPRTRAHYHAWHIRTSEGETERSFSKQ--RYIFNNVASESICPMFVSTREASEEACPSRFSGKDSPVYISSN 139
[Close]
BLAST of mRNA_H-elongata_contig8310.15946.1 vs. uniprot
Match: A0A6H5JYP4_9PHAE (Myb_DNA-bind_7 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JYP4_9PHAE)

HSP 1 Score: 62.0 bits (149), Expect = 5.040e-6
Identity = 35/95 (36.84%), Postives = 50/95 (52.63%), Query Frame = 3 
Query: 2007 MRRRRILFAGFVACIDDTRQSKCVMFREIMGGVGSDGGQEKKWMRYLLEDLKAFGINADQ----WTIAAQDEEG*RKAAEQGENIS*RN*WLQRK 2279
            +R+RR+ FAGFV C++D+R  K ++   + GGVG  GGQE  W+  L EDL AF +  ++    W  + +D E      E G        W  RK
Sbjct:  169 VRKRRLCFAGFVMCMEDSRLPKRMLLGAMAGGVGYRGGQESDWVSRLGEDLVAFNMGDEKEGGKWKKSVKDPEVWYNKVEDGAA------WFMRK 257
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig8310.15946.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 9
Match NameE-valueIdentityDescription
A0A6H5JA60_9PHAE7.930e-8140.74Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L1Z7_9PHAE2.250e-7538.36Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JS37_9PHAE4.110e-6939.63Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KDJ4_9PHAE1.930e-5638.63Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JUR5_9PHAE2.170e-4542.59Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LBV4_ECTSI2.270e-4236.97Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JBZ2_9PHAE1.580e-1643.14Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G5J4_ECTSI3.450e-1442.31Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JYP4_9PHAE5.040e-636.84Myb_DNA-bind_7 domain-containing protein n=1 Tax=E... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig8310contigH-elongata_contig8310:3165..7380 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons5
Model size2558
Cds size858
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931238.0179882-UTR-H-elongata_contig8310:3164..45871622931238.0179882-UTR-H-elongata_contig8310:3164..4587Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig8310 3165..4587 -
1691679754.7128086-UTR-H-elongata_contig8310:3164..45871691679754.7128086-UTR-H-elongata_contig8310:3164..4587Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig8310 3165..4587 -
1622931238.1050034-UTR-H-elongata_contig8310:6375..64891622931238.1050034-UTR-H-elongata_contig8310:6375..6489Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig8310 6376..6489 -
1691679754.7642229-UTR-H-elongata_contig8310:6375..64891691679754.7642229-UTR-H-elongata_contig8310:6375..6489Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig8310 6376..6489 -
1622931238.12278-UTR-H-elongata_contig8310:7217..73801622931238.12278-UTR-H-elongata_contig8310:7217..7380Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig8310 7218..7380 -
1691679754.7741337-UTR-H-elongata_contig8310:7217..73801691679754.7741337-UTR-H-elongata_contig8310:7217..7380Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig8310 7218..7380 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931238.0417204-CDS-H-elongata_contig8310:4587..48881622931238.0417204-CDS-H-elongata_contig8310:4587..4888Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig8310 4588..4888 -
1691679754.723673-CDS-H-elongata_contig8310:4587..48881691679754.723673-CDS-H-elongata_contig8310:4587..4888Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig8310 4588..4888 -
1622931238.0575333-CDS-H-elongata_contig8310:5189..54651622931238.0575333-CDS-H-elongata_contig8310:5189..5465Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig8310 5190..5465 -
1691679754.7347171-CDS-H-elongata_contig8310:5189..54651691679754.7347171-CDS-H-elongata_contig8310:5189..5465Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig8310 5190..5465 -
1622931238.0789409-CDS-H-elongata_contig8310:5783..60361622931238.0789409-CDS-H-elongata_contig8310:5783..6036Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig8310 5784..6036 -
1691679754.747484-CDS-H-elongata_contig8310:5783..60361691679754.747484-CDS-H-elongata_contig8310:5783..6036Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig8310 5784..6036 -
1622931238.092536-CDS-H-elongata_contig8310:6347..63751622931238.092536-CDS-H-elongata_contig8310:6347..6375Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig8310 6348..6375 -
1691679754.7555637-CDS-H-elongata_contig8310:6347..63751691679754.7555637-CDS-H-elongata_contig8310:6347..6375Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig8310 6348..6375 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig8310.15946.1prot_H-elongata_contig8310.15946.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig8310 4588..6375 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig8310.15946.1

>prot_H-elongata_contig8310.15946.1 ID=prot_H-elongata_contig8310.15946.1|Name=mRNA_H-elongata_contig8310.15946.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=286bp
MNLALEIEKGSVSGFHASTFNDGAIVISDAQLNHLILTLNIPASTLPEVI
VSVMAGTNKSPGLRTVLAKTSSDLLHRGYVNTEPCAWNMLLRRSPLLLES
LEINSPWTSKGAEFESGGQSAKFIAWHIRTPSGESKTSYSPSIHTYILQQ
PAEVVCPAFELATETTRTSCPDLLPSDLEIYISSNSKDLARICIDELTEH
GIQGGHVDMGLGPEDAHTQFSKHPDAAMNAFLDFMFLMDAEVIVRSKSSF
SGTVVGMRAMTCVISPVPGLSQPHLYVCSPRGASC*
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mRNA from alignment at H-elongata_contig8310:3165..7380-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig8310.15946.1 ID=mRNA_H-elongata_contig8310.15946.1|Name=mRNA_H-elongata_contig8310.15946.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=4216bp|location=Sequence derived from alignment at H-elongata_contig8310:3165..7380- (Himanthalia elongata Himel1 dioecious)
CAGGAACACCCAGTTCCTGGACGCTTCGAACAGCTCGTGCAATGAGATTT
GGAGGAGCTGGCCTTCAATTCAGCCACAAGCGACGGTTAACGGGACCTTC
ATTGTGTTCAAGCTTTTCGCTTCTATTGGGAACCTCTTTATAACCCTCAA
AACATTGTTGTCGGTGAGAGGAACTTACTTGTTGGCGTGTCTCCTCACGA
TTGTGCAAGGAAGATGGAGCATACATAATTGAAGGCCTAGTCCATAACAG
CTTGCCATAAAACTCGCAATATGTTTATCATGGACGCTCGATGTATGACA
CATGGCATTGGCACAGTATAGATCGCGGTCTTCCGCCTAAGGTCGCCAAC
TTGATGTGTGTGTTTGCGGGCTTGCGCGGTTTAAGCTGGTTGCGGTATGT
TTAGATGGTTAACCATGGTTTTATGTTTCGCACGCCTATCTGCTGTCACT
CCCATAATCAAACGATCTCGGGCTCGGAATTAAATCCTATTTGCCCTGGC
GTGGACGGGGGCAGGGAAAATGATTTCCCTGTTCAGCTGACCACGAGCAG
AAGGAAACCAAGTCCGGTTATCCCTCTGCTAAATGTGAGACCATACATAC
ATACACATGTGTTGTACATATGACTCTTTTCTGTCATATACTTGTTCCTT
CCCTTTTCCTTACTCGTTTTGTATGTTTCCTTGCCTGATGATGGGAAATA
ATATGTATTTCGCTGACCTTCAAAGCCTTATGTCACACTCTGGTCATCGA
TATCATGCCATAAAGAAACATATACCAGTCAATTTATATCGGTTATGCTT
TGCTGGTGGAGCCATCGATGGCCCTCGAACCTAACGGTAGATAAAAAGTA
ACGATCAACTATCCCGCTGCTGCTCTCTCTCCTTCATCTAGGTCGTTCGA
TTCCTCGAAGTGGGACTTGTATTAGACTACCAAAATTCATTTCCCGGGTT
CAAGCAGGCGTTTGAGCCCAGCGAGATCATATGGGATGTCGACCCTGCCC
CGCTGATGAATTTGGCGCTGGAGATAGAAAAAGGTATAACTTATAGCAGC
ACCATTAGCTCTAGCGGGTGCACCTCGATTTTTGGTCTGTGTTTGATTCA
GGTGATGTTTTATAATGATAATGGGTATTTATATTGAGCCCTACTGCTCG
AGATAAAATATATATATAATGGAAGAAAAATAGTCCTGGTGGCATGTTCT
AACCTCCTTTTGATTTCAATTGCATGATCTGAGTACCTCAGCAATACAGC
TTGCTTCATGAAGCCGGCATCTTTGAAATAATGCTAAGCTGATTGTATCG
TATAATTCTGATTTTCGCTTGCATCCCGACCGTGGAATCTCCAGGCAGCG
TGAGTGGTTTCCACGCAAGCACTTTTAATGATGGCGCCATAGTTATTTCG
GATGCTCAGCTAAATCATCTGATTTTGACTTTAAATATCCCTGCTAGCAC
TCTGCCTGAAGTTATTGTATCGGTGATGGCTGGCACCAATAAGTCACCAG
GGCTGCGGACGGTGCTCGCAAAAACTAGTAGTGACCTTTTGCATCGAGGG
TACGTAAACACGGAGCCCTGCGCATGGAACATGTTGCTCAGAAGAAGGTG
GGTCTCGCGTCGCCGAGGTGCTACTATTTCTTCCCATTATAGTTTCATAT
GAGGCGTCTTACTAAATATTATTCTACACAACAAGTGTATAAGTTTATAG
GCTACCCAAAGTTGCACCAGGATTAAGTGCCTGCTGCGGTGTGAGTGCCT
AGGAAGTACAGTTCTAGTGCTCTTGAAGTGTGTATTATTATTCAGAGGCA
TGTGGCTTCTCTTTCATATAAAGTGCTAATACACCGGTTAGTAATCGTCA
CGCTAGCTTTTAATATTGATCACAACGCTCTCACACCGCCCCCACGCCGC
TCCCACGATCATCAGCCCTCTACTTTTGGAGAGCTTAGAAATCAACAGCC
CATGGACATCAAAGGGTGCAGAGTTTGAATCTGGGGGACAGTCCGCTAAG
TTCATTGCTTGGCATATACGTACCCCAAGTGGAGAGTCCAAGACTTCCTA
CTCCCCGAGTATCCACACTTACATACTTCAGCAACCGGCAGAGGTGGTAT
GCCCAGCGTTCGAGTTAGCGACAGAGACCACAAGAACTTCGTGCCCTGAT
CTTTTGCCGAGCGACCTGGAAATATATATTTCTTCCAACAGGTAATCGTG
CCTCAGCATATAAAGTTCGTAGATACTTCATCGCATAGTTGAAAAAGAAG
GACAACATCCCTTTCACCAGATCGGGATCCCTTGGTGAATATCTCTTCCA
CGCCTTCACTGCAGATATTTCTGCATCTCCACGTGAACACTCGCCTTAAA
GAGTTATTAAATATGATCATTTCAGAGGAAAATGTTGCCCGATCTACTTC
CACTCCACCTAAAAATGCCTCACTGCCCAACTGCAGCATAATTCTCAACA
TGCACTCGACTGATGCCGCATGTTACCCGTCCGTTATCTTAGCAAGGATT
TGGCACGCATCTGCATCGATGAATTGACGGAACACGGCATTCAGGGAGGA
CATGTGGACATGGGTCTTGGACCTGAGGATGCTCACACCCAATTCAGCAA
ACACCCCGATGCCGCCATGAATGCGTTCCTCGATTTCATGTTCCTCATGG
ACGCTGAGGTTATCGTGCGTTCGAAATCCTCGTTTTCTGGAACGGTCGTT
GGAATGAGGGCAATGACGTGTGTGATTTCGCCCGTTCCCGGCCTTTCACA
ACCTCATCTCTACGTATGTAGTCCGAGGGGCGCATCATGCTGATATGGGT
TAGAAAGGCGCGAACTCTCTGCGAATTAAATATTTAGGCTGATAATTCTG
AAACAAATTCTTGATTTTGATTTTCATTCAATTCTCACATAATATTATGT
CAAAACCCAGCCCGTCATCATAAGGCTGTAAAACACCATCCGGAAGGAAT
ACTTTCAACGTGCTCTCCATACAGAATGAAAACCGCCTCCGATACTGTCT
GTGCTCCATCACACATGTCCACTGTACCAATAGTGATTGCGGGAAATAAA
TAGTCCATAGGCTTGCATGAATAGGCTGCACTCTTTAGTCAAGCTACCTT
GAGGATGGCTGGCTCAGGGCCGGCGGACTCTCGGTAGTAAACGCCATTGG
TACTCTATTGGGTAACCCGATGAATTCGGGATTGATCCTATGGCGGTTGA
GGGTAGAGATCGACGTCGTCGTGGGAACCGAGAAGACCCCGGGAGTACGC
ACCAGGTTAAGCCTGGGTTGAGAGAATGAGCAGACTAACGCGGGACGGGA
CGGCCGAATCCATGCTACGAGGCCAGATTCTCAGGTGCGAACAGGGACAG
GGAAAATACCATATCCTGTTCAGTTTACTACAAGCAGGAAGCAGCCATAA
CTGGTTGATCCATACTCTGCAATACGTGATGGCCGCACGTAATACTCGAA
AAAAGCGGCATCTCCCGAAAAAATAAATAAAGACAAAAGTTTATGTACTG
CGTGTGGCTGTCGGAACGCATACTTATCAAAGAACGGTTGAGCGAAGAGA
CGCGGGTTTGATGAGATAAAACCAAGAAAAACGTAACGCCAGAGAAAGGT
AATATGGCATCGGCAAATTAAACGCCCTATCTGGACACGTTCACGAAGAC
GGGAAGCGAGAGTCATGCGCAGGAGGCGGATCCTGTTCGCGGGATTCGTG
GCGTGCATCGACGACACGAGACAGTCAAAGTGCGTGATGTTCAGAGAAAT
CATGGGGGGCGTAGGTAGCGATGGGGGGCAGGAAAAGAAGTGGATGAGGT
ATCTTCTGGAAGATCTCAAAGCTTTCGGTATCAACGCCGACCAGTGGACG
ATTGCAGCCCAGGACGAGGAGGGGTGACGCAAGGCAGCGGAACAAGGGGA
AAACATTTCATGAAGAAATTGATGGCTGCAGAGAAAGTCAGGACTGGACT
ACGGTATGCACTAGAATGTCCGAACGTGACAGGGAGGACCAAGGAAAATA
TGGCCCAATATAAGCGTGCTCGTGCTGGTTTGAGCACCATAGCTGATTAG
CCACGGGTGGCGCAAACTTCTCCACCGGGCGTTTTTTTGCTTCCCAATGT
CATATTGCCTTTCTCTGGCGTTAGGATTTTTCTTTGCCTTGTTTTTCTCC
CGTTTTCGTTTCTTTTTTTCTTCCATTGATGCCGTTTCTCTTCGTTCGAT
CGTTCCGATAGGGCCG
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Coding sequence (CDS) from alignment at H-elongata_contig8310:3165..7380-

>mRNA_H-elongata_contig8310.15946.1 ID=mRNA_H-elongata_contig8310.15946.1|Name=mRNA_H-elongata_contig8310.15946.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1716bp|location=Sequence derived from alignment at H-elongata_contig8310:3165..7380- (Himanthalia elongata Himel1 dioecious)
ATGAATTTGGCGCTGGAGATAGAAAAAGATGAATTTGGCGCTGGAGATAG
AAAAAGGCAGCGTGAGTGGTTTCCACGCAAGCACTTTTAATGATGGCGCC
ATAGTTATTTCGGATGCTCAGCTAAATCATCTGATTTTGACTTTAAATAT
CCCTGCTAGCACTCTGCCTGAAGTTATTGTATCGGTGATGGCTGGCACCA
ATAAGTCACCAGGGCTGCGGACGGTGCTCGCAAAAACTAGTAGTGACCTT
TTGCATCGAGGGTACGTAAACACGGAGCCCTGCGCATGGAACATGTTGCT
CAGAAGAAGGCAGCGTGAGTGGTTTCCACGCAAGCACTTTTAATGATGGC
GCCATAGTTATTTCGGATGCTCAGCTAAATCATCTGATTTTGACTTTAAA
TATCCCTGCTAGCACTCTGCCTGAAGTTATTGTATCGGTGATGGCTGGCA
CCAATAAGTCACCAGGGCTGCGGACGGTGCTCGCAAAAACTAGTAGTGAC
CTTTTGCATCGAGGGTACGTAAACACGGAGCCCTGCGCATGGAACATGTT
GCTCAGAAGAAGCCCTCTACTTTTGGAGAGCTTAGAAATCAACAGCCCAT
GGACATCAAAGGGTGCAGAGTTTGAATCTGGGGGACAGTCCGCTAAGTTC
ATTGCTTGGCATATACGTACCCCAAGTGGAGAGTCCAAGACTTCCTACTC
CCCGAGTATCCACACTTACATACTTCAGCAACCGGCAGAGGTGGTATGCC
CAGCGTTCGAGTTAGCGACAGAGACCACAAGAACTTCGTGCCCTGATCTT
TTGCCGAGCGACCTGGAAATATATATTTCTTCCAACAGCCCTCTACTTTT
GGAGAGCTTAGAAATCAACAGCCCATGGACATCAAAGGGTGCAGAGTTTG
AATCTGGGGGACAGTCCGCTAAGTTCATTGCTTGGCATATACGTACCCCA
AGTGGAGAGTCCAAGACTTCCTACTCCCCGAGTATCCACACTTACATACT
TCAGCAACCGGCAGAGGTGGTATGCCCAGCGTTCGAGTTAGCGACAGAGA
CCACAAGAACTTCGTGCCCTGATCTTTTGCCGAGCGACCTGGAAATATAT
ATTTCTTCCAACAGCAAGGATTTGGCACGCATCTGCATCGATGAATTGAC
GGAACACGGCATTCAGGGAGGACATGTGGACATGGGTCTTGGACCTGAGG
ATGCTCACACCCAATTCAGCAAACACCCCGATGCCGCCATGAATGCGTTC
CTCGATTTCATGTTCCTCATGGACGCTGAGGTTATCGTGCGTTCGAAATC
CTCGTTTTCTGGAACGGTCGTTGGAATGAGGGCAATGACGTGTGTGATTT
CGCCCGTTCCCGGCCTTTCACAACCTCATCTCTACGTATGTAGTCCGAGG
GGCGCATCATGCTGACAAGGATTTGGCACGCATCTGCATCGATGAATTGA
CGGAACACGGCATTCAGGGAGGACATGTGGACATGGGTCTTGGACCTGAG
GATGCTCACACCCAATTCAGCAAACACCCCGATGCCGCCATGAATGCGTT
CCTCGATTTCATGTTCCTCATGGACGCTGAGGTTATCGTGCGTTCGAAAT
CCTCGTTTTCTGGAACGGTCGTTGGAATGAGGGCAATGACGTGTGTGATT
TCGCCCGTTCCCGGCCTTTCACAACCTCATCTCTACGTATGTAGTCCGAG
GGGCGCATCATGCTGA
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