mRNA_H-elongata_contig83040.15941.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig83040.15941.1
Unique NamemRNA_H-elongata_contig83040.15941.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig83040.15941.1 vs. uniprot
Match: A0A6H5K0I6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K0I6_9PHAE)

HSP 1 Score: 74.3 bits (181), Expect = 2.270e-13
Identity = 45/94 (47.87%), Postives = 58/94 (61.70%), Query Frame = 1 
Query:    1 LLLLTGKPGGELLGLEFDRATTAEQDPLEVFFPIDDGLVGRCVYTGLPCQAVSGGSGAGHGG------RHFFSKNGT--ISLSGSADLYGSLPL 258
            LLLL G+PGG +  LE DR    +QDPLE  FPI +GLV RCV TGL  Q   GG+G+  G       R  +S +G   ++L+G ADL+ +LPL
Sbjct:  794 LLLLNGEPGGGMFCLESDRRAPPDQDPLEASFPIGNGLVARCVATGLAFQTRRGGNGSTGGASPPRSSRRLYSTSGALDVALAGPADLH-ALPL 886
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BLAST of mRNA_H-elongata_contig83040.15941.1 vs. uniprot
Match: D7FQ01_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FQ01_ECTSI)

HSP 1 Score: 73.2 bits (178), Expect = 5.660e-13
Identity = 43/93 (46.24%), Postives = 55/93 (59.14%), Query Frame = 1 
Query:    1 LLLLTGKPGGELLGLEFDRATTAEQDPLEVFFPIDDGLVGRCVYTGLPCQAVSGGSGAGHGG------RHFFSKNGT--ISLSGSADLYGSLP 255
            LLLL G+PGG +  LE DR    +QDPLE  FPI +GLV RCV TGL  Q   GG+G+  G       R  +S +G   ++L+G ADL+   P
Sbjct:  437 LLLLNGEPGGGMFCLESDRRAPPDQDPLEASFPIGNGLVARCVATGLAFQTRRGGNGSTGGASPPRSSRRLYSTSGALDVALAGPADLHALPP 529
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig83040.15941.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5K0I6_9PHAE2.270e-1347.87Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FQ01_ECTSI5.660e-1346.24Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig83040contigH-elongata_contig83040:557..1094 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size301
Cds size300
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931237.413565-CDS-H-elongata_contig83040:556..6161622931237.413565-CDS-H-elongata_contig83040:556..616Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig83040 557..616 +
1691679754.4519398-CDS-H-elongata_contig83040:556..6161691679754.4519398-CDS-H-elongata_contig83040:556..616Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig83040 557..616 +
1622931237.435469-CDS-H-elongata_contig83040:854..10941622931237.435469-CDS-H-elongata_contig83040:854..1094Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig83040 855..1094 +
1691679754.4631398-CDS-H-elongata_contig83040:854..10941691679754.4631398-CDS-H-elongata_contig83040:854..1094Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig83040 855..1094 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig83040.15941.1prot_H-elongata_contig83040.15941.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig83040 557..1094 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig83040.15941.1

>prot_H-elongata_contig83040.15941.1 ID=prot_H-elongata_contig83040.15941.1|Name=mRNA_H-elongata_contig83040.15941.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=100bp
LLLLTGKPGGELLGLEFDRATTAEQDPLEVFFPIDDGLVGRCVYTGLPCQ
AVSGGSGAGHGGRHFFSKNGTISLSGSADLYGSLPLGHHHLYQRRSAEAA
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mRNA from alignment at H-elongata_contig83040:557..1094+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig83040.15941.1 ID=mRNA_H-elongata_contig83040.15941.1|Name=mRNA_H-elongata_contig83040.15941.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=538bp|location=Sequence derived from alignment at H-elongata_contig83040:557..1094+ (Himanthalia elongata Himel1 dioecious)
TTACTTCTTCTCACCGGCAAACCTGGCGGAGAGCTCTTGGGCCTCGAATT
CGATCGAGCGGTGAGTGTCAGCCCCAAAGATCCATGCGCTCGCAAATGCG
CTCCAGAGCATTTTTACTTACAAACAATCCCCGCCCCAAAGCAGCGTAAG
CAGACCGAACTGCTGCCGTGATCGATGACCAAATGAATGAACGCGAGTTG
TTTTTGTTCGAAAGTTGGGTTTTTGCCATTTTTTTCTCTCATCAAATCAC
CACATGCGCGAATACGTTCGTCGTGCCACCTTTTCGACGGGCCGGCAGAC
TACCGCCGAACAAGATCCGCTCGAGGTTTTCTTCCCAATCGACGACGGCT
TGGTCGGCCGATGCGTCTACACGGGCCTCCCATGCCAGGCGGTGTCAGGC
GGCAGCGGCGCTGGCCATGGGGGCCGCCACTTCTTTAGCAAAAATGGTAC
CATTTCCTTAAGCGGGTCGGCAGACCTCTACGGCTCTCTCCCACTGGGTC
ACCACCATCTCTATCAGCGGCGGAGCGCTGAGGCGGCA
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Coding sequence (CDS) from alignment at H-elongata_contig83040:557..1094+

>mRNA_H-elongata_contig83040.15941.1 ID=mRNA_H-elongata_contig83040.15941.1|Name=mRNA_H-elongata_contig83040.15941.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=600bp|location=Sequence derived from alignment at H-elongata_contig83040:557..1094+ (Himanthalia elongata Himel1 dioecious)
TTACTTCTTCTCACCGGCAAACCTGGCGGAGAGCTCTTGGGCCTCGAATT
CGATCGAGCGTTACTTCTTCTCACCGGCAAACCTGGCGGAGAGCTCTTGG
GCCTCGAATTCGATCGAGCGACTACCGCCGAACAAGATCCGCTCGAGGTT
TTCTTCCCAATCGACGACGGCTTGGTCGGCCGATGCGTCTACACGGGCCT
CCCATGCCAGGCGGTGTCAGGCGGCAGCGGCGCTGGCCATGGGGGCCGCC
ACTTCTTTAGCAAAAATGGTACCATTTCCTTAAGCGGGTCGGCAGACCTC
TACGGCTCTCTCCCACTGGGTCACCACCATCTCTATCAGCGGCGGAGCGC
TGAGGCGGCAACTACCGCCGAACAAGATCCGCTCGAGGTTTTCTTCCCAA
TCGACGACGGCTTGGTCGGCCGATGCGTCTACACGGGCCTCCCATGCCAG
GCGGTGTCAGGCGGCAGCGGCGCTGGCCATGGGGGCCGCCACTTCTTTAG
CAAAAATGGTACCATTTCCTTAAGCGGGTCGGCAGACCTCTACGGCTCTC
TCCCACTGGGTCACCACCATCTCTATCAGCGGCGGAGCGCTGAGGCGGCA
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