mRNA_H-elongata_contig8304.15940.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig8304.15940.1
Unique NamemRNA_H-elongata_contig8304.15940.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig8304.15940.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig8304contigH-elongata_contig8304:3598..4167 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size242
Cds size198
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig8304.15940.1prot_H-elongata_contig8304.15940.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig8304 3629..4154 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931237.2514262-UTR-H-elongata_contig8304:3597..36281622931237.2514262-UTR-H-elongata_contig8304:3597..3628Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig8304 3598..3628 -
1691679754.3982964-UTR-H-elongata_contig8304:3597..36281691679754.3982964-UTR-H-elongata_contig8304:3597..3628Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig8304 3598..3628 -
1622931237.3180213-UTR-H-elongata_contig8304:4154..41671622931237.3180213-UTR-H-elongata_contig8304:4154..4167Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig8304 4155..4167 -
1691679754.433126-UTR-H-elongata_contig8304:4154..41671691679754.433126-UTR-H-elongata_contig8304:4154..4167Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig8304 4155..4167 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931237.2779856-CDS-H-elongata_contig8304:3628..38001622931237.2779856-CDS-H-elongata_contig8304:3628..3800Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig8304 3629..3800 -
1691679754.4136982-CDS-H-elongata_contig8304:3628..38001691679754.4136982-CDS-H-elongata_contig8304:3628..3800Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig8304 3629..3800 -
1622931237.2942398-CDS-H-elongata_contig8304:4128..41541622931237.2942398-CDS-H-elongata_contig8304:4128..4154Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig8304 4129..4154 -
1691679754.4243379-CDS-H-elongata_contig8304:4128..41541691679754.4243379-CDS-H-elongata_contig8304:4128..4154Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig8304 4129..4154 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig8304.15940.1

>prot_H-elongata_contig8304.15940.1 ID=prot_H-elongata_contig8304.15940.1|Name=mRNA_H-elongata_contig8304.15940.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=66bp
MKLPSKDAQFLISVISTCPSPPARRAAAQTYLSRPPPPPRPQHPHFPLPC
WWSEHLAAAVPVWYW*
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mRNA from alignment at H-elongata_contig8304:3598..4167-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig8304.15940.1 ID=mRNA_H-elongata_contig8304.15940.1|Name=mRNA_H-elongata_contig8304.15940.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=570bp|location=Sequence derived from alignment at H-elongata_contig8304:3598..4167- (Himanthalia elongata Himel1 dioecious)
CAACGTCGCCAGCATGAAACTTCCTTCCAAGGACGCCCAGTGAGTGTACC
TTTTTGTTTTGGGGAGCGGGATCGCGTAGTCACGCCATTTCTGGCGCATT
GTCGCGGCTCCGCTCTTTTTTTATAGTATGTTGCATGTTGCGGTAAGGGG
ATTTAAAAGTGCCGATTCAATTTTTGGCGAGCGAGTGGATCGACCGACGG
TCAATGCAAAAACCCTATGCATTATTTTTAATCGCCCCCGTGCTATCCGG
CGGCCTGAAATATACTGCTTTCAAAGCATGCCTCCTTACCCAGCGCGGTG
CTCCCTCTCAGGCCACCTCTAACCTTAGTCCCCCCCCTCCTCGACATCGC
TGGTCCGTTTCCCTCAGGTTCCTGATTTCCGTAATATCAACATGCCCATC
CCCTCCGGCACGAAGAGCAGCGGCGCAGACGTACCTTTCCCGCCCCCCGC
CTCCGCCTCGACCGCAACACCCACATTTTCCCCTCCCCTGCTGGTGGAGC
GAGCACCTTGCAGCAGCAGTCCCCGTTTGGTACTGGTAGCGGTAGTCAGC
TGAAGTTCGGCTTGGGTCCG
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Coding sequence (CDS) from alignment at H-elongata_contig8304:3598..4167-

>mRNA_H-elongata_contig8304.15940.1 ID=mRNA_H-elongata_contig8304.15940.1|Name=mRNA_H-elongata_contig8304.15940.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=396bp|location=Sequence derived from alignment at H-elongata_contig8304:3598..4167- (Himanthalia elongata Himel1 dioecious)
ATGAAACTTCCTTCCAAGGACGCCCAATGAAACTTCCTTCCAAGGACGCC
CAGTTCCTGATTTCCGTAATATCAACATGCCCATCCCCTCCGGCACGAAG
AGCAGCGGCGCAGACGTACCTTTCCCGCCCCCCGCCTCCGCCTCGACCGC
AACACCCACATTTTCCCCTCCCCTGCTGGTGGAGCGAGCACCTTGCAGCA
GCAGTCCCCGTTTGGTACTGGTAGGTTCCTGATTTCCGTAATATCAACAT
GCCCATCCCCTCCGGCACGAAGAGCAGCGGCGCAGACGTACCTTTCCCGC
CCCCCGCCTCCGCCTCGACCGCAACACCCACATTTTCCCCTCCCCTGCTG
GTGGAGCGAGCACCTTGCAGCAGCAGTCCCCGTTTGGTACTGGTAG
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