mRNA_H-elongata_contig83033.15938.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig83033.15938.1
Unique NamemRNA_H-elongata_contig83033.15938.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
[Close]
BLAST of mRNA_H-elongata_contig83033.15938.1 vs. uniprot
Match: A0A6H5J907_9PHAE (G domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5J907_9PHAE)

HSP 1 Score: 190 bits (482), Expect = 1.160e-54
Identity = 91/108 (84.26%), Postives = 99/108 (91.67%), Query Frame = 1 
Query:    1 AEMICAGVLPIMQMRNAMPPMTLIAKRIPRHILELTYTIKLPVLPENAKDVQGKLVLSPQQLLEAYCQARGMFRARALGESDMPRAARQILKDYTDGRLLFCHPPAGL 324
            AEMICAGVLPIMQMRN MPPM LIA+RIPRHILE+TYTIKLPVLP + +D  G  +LSPQQLLE+YCQARG+FRARALGESDMPRAARQILKD+TDGRLLFCHPPA L
Sbjct:  450 AEMICAGVLPIMQMRNVMPPMALIARRIPRHILEITYTIKLPVLPGDVRDTAGNAMLSPQQLLESYCQARGLFRARALGESDMPRAARQILKDFTDGRLLFCHPPADL 557
[Close]
BLAST of mRNA_H-elongata_contig83033.15938.1 vs. uniprot
Match: A0A835YPB7_9STRA (Lsg1, cytoplasmic GTPase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YPB7_9STRA)

HSP 1 Score: 116 bits (290), Expect = 5.660e-28
Identity = 61/124 (49.19%), Postives = 78/124 (62.90%), Query Frame = 1 
Query:    1 AEMICAGVLPIMQMRNAMPPMTLIAKRIPRHILELTYTIKLPVLPENAKDVQGK-------------LVLSPQ---QLLEAYCQARGMFRARALGESDMPRAARQILKDYTDGRLLFCHPPAGL 324
            AEMICAGVLPIMQMR+A+ P+ L+A+R+PRHILELTYTI                            L   P    ++L A+C++RG++R   LG+ D+PRAAR +LKDYT+G LLFCHPP  L
Sbjct:  467 AEMICAGVLPIMQMRDALAPIALVARRVPRHILELTYTIXXXXXXXXXXXXXXXXXXXXXXXXXXXALATRPPTATEVLTAFCESRGLYRPGGLGDYDLPRAARMLLKDYTEGTLLFCHPPPDL 590
[Close]
BLAST of mRNA_H-elongata_contig83033.15938.1 vs. uniprot
Match: A0A7S2V0G3_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V0G3_9STRA)

HSP 1 Score: 104 bits (260), Expect = 9.240e-25
Identity = 58/109 (53.21%), Postives = 73/109 (66.97%), Query Frame = 1 
Query:    4 EMICAGVLPIMQMRNAMPPMTLIAKRIPRHILELTYTIKLPVLPENAKDVQGK-LVLSPQQLLEAYCQARGMFRARALGESDMPRAARQILKDYTDGR-LLFCHPPAGL 324
            EMICAGVLPI QMR    P+ LIA RIPRHI ELTYT++ P   E  ++  G+   L+  +LLE +CQ R  F   A G+ D  RA+R +L+DYT+G+ LLFCHPP  L
Sbjct:  101 EMICAGVLPINQMREHRGPVGLIASRIPRHIFELTYTLRFPREGEEEEEAAGEGRPLTATELLEVFCQTRHYFMG-ASGQVDEQRASRYLLQDYTEGKVLLFCHPPPSL 208
[Close]
BLAST of mRNA_H-elongata_contig83033.15938.1 vs. uniprot
Match: UPI001CF0D9A7 (large subunit GTPase 1 homolog n=2 Tax=Bufo TaxID=8383 RepID=UPI001CF0D9A7)

HSP 1 Score: 102 bits (255), Expect = 2.910e-23
Identity = 55/108 (50.93%), Postives = 76/108 (70.37%), Query Frame = 1 
Query:    1 AEMICAGVLPIMQMRNAMPPMTLIAKRIPRHILELTYTIKLPVLPENAKDVQGKLVLSPQQLLEAYCQARGMFRARALGESDMPRAARQILKDYTDGRLLFCHPPAGL 324
            AEMIC+G+LPI QMR+ +PP++LIA+RIPRH++E  Y I + + P   +D Q +   S ++LL AY   RG   A   G+ D PR+AR ILKDY +G+LL+CHPP G+
Sbjct:  429 AEMICSGILPIDQMRDHVPPISLIAQRIPRHVVESIYGINI-IRPREDED-QDRAPTS-EELLAAYGYMRGFMTAH--GQPDQPRSARYILKDYVNGKLLYCHPPPGI 531
[Close]
BLAST of mRNA_H-elongata_contig83033.15938.1 vs. uniprot
Match: A0A822IB49_9NEOB ((mimic poison frog) hypothetical protein n=1 Tax=Ranitomeya imitator TaxID=111125 RepID=A0A822IB49_9NEOB)

HSP 1 Score: 102 bits (254), Expect = 3.960e-23
Identity = 55/108 (50.93%), Postives = 77/108 (71.30%), Query Frame = 1 
Query:    1 AEMICAGVLPIMQMRNAMPPMTLIAKRIPRHILELTYTIKLPVLPENAKDVQGKLVLSPQQLLEAYCQARGMFRARALGESDMPRAARQILKDYTDGRLLFCHPPAGL 324
            AEMIC+G+LPI QMR+ +PP++LIA+RIPR+++E TY I + + P   +D Q +   S ++LL AY   RG   A   G+ D PR+AR ILKDY +G+LL+CHPP G+
Sbjct:  424 AEMICSGILPIDQMRDHVPPISLIAQRIPRNVVEATYGINI-IRPREDED-QDRAPTS-EELLAAYGYMRGFMTAH--GQPDQPRSARYILKDYVNGKLLYCHPPPGV 526
[Close]
BLAST of mRNA_H-elongata_contig83033.15938.1 vs. uniprot
Match: A0A7N4NQJ5_SARHA (Large 60S subunit nuclear export GTPase 1 n=3 Tax=Sarcophilus harrisii TaxID=9305 RepID=A0A7N4NQJ5_SARHA)

HSP 1 Score: 102 bits (254), Expect = 4.090e-23
Identity = 54/108 (50.00%), Postives = 72/108 (66.67%), Query Frame = 1 
Query:    1 AEMICAGVLPIMQMRNAMPPMTLIAKRIPRHILELTYTIKLPVLPENAKDVQGKLVLSPQQLLEAYCQARGMFRARALGESDMPRAARQILKDYTDGRLLFCHPPAGL 324
            A+MIC G+LPI QMR+ +PP++LI + IPRH+LE TY I + + P   +D     V + ++LL AY   RG   A   G+ D PRAAR ILKDY  G+LL+CHPP G+
Sbjct:  508 AQMICCGILPIDQMRDHVPPISLICQNIPRHVLEATYGIHI-IRPREDEDPNR--VPTSEELLTAYGSMRGFMTAH--GQPDQPRAARYILKDYVRGKLLYCHPPPGI 610
[Close]
BLAST of mRNA_H-elongata_contig83033.15938.1 vs. uniprot
Match: UPI00115D25FF (large subunit GTPase 1 homolog n=1 Tax=Manacus vitellinus TaxID=328815 RepID=UPI00115D25FF)

HSP 1 Score: 101 bits (251), Expect = 6.140e-23
Identity = 52/108 (48.15%), Postives = 74/108 (68.52%), Query Frame = 1 
Query:    1 AEMICAGVLPIMQMRNAMPPMTLIAKRIPRHILELTYTIKLPVLPENAKDVQGKLVLSPQQLLEAYCQARGMFRARALGESDMPRAARQILKDYTDGRLLFCHPPAGL 324
            AEMIC+G+LPI QMR+ +PP++L+ + IPR+ILE TY I + + P   +D   K   + ++LL AY   RG   A   G+ D PR+AR +LKDY +G+LL+CHPP G+
Sbjct:  248 AEMICSGILPIDQMRDHVPPISLVCQHIPRNILEATYGISI-IRPREDEDPDRKP--TAEELLTAYGYMRGFMTAH--GQPDQPRSARYVLKDYVNGKLLYCHPPPGI 350
[Close]
BLAST of mRNA_H-elongata_contig83033.15938.1 vs. uniprot
Match: UPI000511930E (large subunit GTPase 1 homolog n=1 Tax=Nipponia nippon TaxID=128390 RepID=UPI000511930E)

HSP 1 Score: 101 bits (252), Expect = 7.410e-23
Identity = 54/108 (50.00%), Postives = 73/108 (67.59%), Query Frame = 1 
Query:    1 AEMICAGVLPIMQMRNAMPPMTLIAKRIPRHILELTYTIKLPVLPENAKDVQGKLVLSPQQLLEAYCQARGMFRARALGESDMPRAARQILKDYTDGRLLFCHPPAGL 324
            AEMIC+G+LPI QMR+ +PP++LI + IPR+ILE TY I + + P   +D   K   S ++LL AY   RG   A   G+ D PR+AR +LKDY  G+LL+CHPP G+
Sbjct:  429 AEMICSGILPIDQMRDHVPPISLICQHIPRNILEATYGINI-IRPREDEDPDRKP--SAEELLTAYGCMRGFMTAH--GQPDQPRSARYVLKDYVSGKLLYCHPPPGI 531
[Close]
BLAST of mRNA_H-elongata_contig83033.15938.1 vs. uniprot
Match: UPI0005118766 (large subunit GTPase 1 homolog n=4 Tax=Neognathae TaxID=8825 RepID=UPI0005118766)

HSP 1 Score: 100 bits (250), Expect = 8.530e-23
Identity = 52/108 (48.15%), Postives = 73/108 (67.59%), Query Frame = 1 
Query:    1 AEMICAGVLPIMQMRNAMPPMTLIAKRIPRHILELTYTIKLPVLPENAKDVQGKLVLSPQQLLEAYCQARGMFRARALGESDMPRAARQILKDYTDGRLLFCHPPAGL 324
            AEMIC+G+LPI QMR+ +PP++L+ + IPR+ILE TY I + + P   +D   K   + ++LL AY   RG   A   G+ D PR+AR +LKDY  G+LL+CHPP G+
Sbjct:  249 AEMICSGILPIDQMRDHVPPISLVCQHIPRNILEATYGINI-IRPREDEDPDRKP--TAEELLTAYGYMRGFMTAH--GQPDQPRSARYVLKDYVSGKLLYCHPPPGI 351
[Close]
BLAST of mRNA_H-elongata_contig83033.15938.1 vs. uniprot
Match: UPI000FD68EE0 (large subunit GTPase 1 homolog isoform X1 n=5 Tax=Corapipo altera TaxID=415028 RepID=UPI000FD68EE0)

HSP 1 Score: 101 bits (251), Expect = 1.030e-22
Identity = 52/108 (48.15%), Postives = 74/108 (68.52%), Query Frame = 1 
Query:    1 AEMICAGVLPIMQMRNAMPPMTLIAKRIPRHILELTYTIKLPVLPENAKDVQGKLVLSPQQLLEAYCQARGMFRARALGESDMPRAARQILKDYTDGRLLFCHPPAGL 324
            AEMIC+G+LPI QMR+ +PP++L+ + IPR+ILE TY I + + P   +D   K   + ++LL AY   RG   A   G+ D PR+AR +LKDY +G+LL+CHPP G+
Sbjct:  460 AEMICSGILPIDQMRDHVPPISLVCQHIPRNILEATYGISI-IRPREDEDPDRKP--TAEELLTAYGYMRGFMTAH--GQPDQPRSARYVLKDYVNGKLLYCHPPPGI 562
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig83033.15938.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5J907_9PHAE1.160e-5484.26G domain-containing protein n=2 Tax=Ectocarpus Tax... [more]
A0A835YPB7_9STRA5.660e-2849.19Lsg1, cytoplasmic GTPase n=1 Tax=Tribonema minus T... [more]
A0A7S2V0G3_9STRA9.240e-2553.21Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
UPI001CF0D9A72.910e-2350.93large subunit GTPase 1 homolog n=2 Tax=Bufo TaxID=... [more]
A0A822IB49_9NEOB3.960e-2350.93(mimic poison frog) hypothetical protein n=1 Tax=R... [more]
A0A7N4NQJ5_SARHA4.090e-2350.00Large 60S subunit nuclear export GTPase 1 n=3 Tax=... [more]
UPI00115D25FF6.140e-2348.15large subunit GTPase 1 homolog n=1 Tax=Manacus vit... [more]
UPI000511930E7.410e-2350.00large subunit GTPase 1 homolog n=1 Tax=Nipponia ni... [more]
UPI00051187668.530e-2348.15large subunit GTPase 1 homolog n=4 Tax=Neognathae ... [more]
UPI000FD68EE01.030e-2248.15large subunit GTPase 1 homolog isoform X1 n=5 Tax=... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig83033contigH-elongata_contig83033:369..692 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score185.3
Seed ortholog evalue1.5e-44
Seed eggNOG ortholog2880.D7G7R6
KEGG koko:K14539
KEGG Pathwayko03008,map03008
GOsGO:0000003,GO:0000054,GO:0000166,GO:0001882,GO:0001883,GO:0003006,GO:0003674,GO:0003824,GO:0003924,GO:0005488,GO:0005525,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005730,GO:0005737,GO:0005783,GO:0005829,GO:0006139,GO:0006364,GO:0006396,GO:0006403,GO:0006405,GO:0006611,GO:0006725,GO:0006807,GO:0006810,GO:0006886,GO:0006913,GO:0007275,GO:0008104,GO:0008150,GO:0008152,GO:0009790,GO:0009791,GO:0009793,GO:0009966,GO:0009987,GO:0010154,GO:0010467,GO:0010646,GO:0010817,GO:0012505,GO:0015030,GO:0015031,GO:0015833,GO:0015931,GO:0016070,GO:0016072,GO:0016462,GO:0016604,GO:0016787,GO:0016817,GO:0016818,GO:0017076,GO:0017111,GO:0019001,GO:0022414,GO:0022613,GO:0023051,GO:0031503,GO:0031974,GO:0031981,GO:0032501,GO:0032502,GO:0032549,GO:0032550,GO:0032553,GO:0032555,GO:0032561,GO:0032879,GO:0033036,GO:0033750,GO:0034470,GO:0034613,GO:0034641,GO:0034660,GO:0035639,GO:0036094,GO:0042254,GO:0042886,GO:0043021,GO:0043022,GO:0043167,GO:0043168,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044085,GO:0044087,GO:0044089,GO:0044237,GO:0044238,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044451,GO:0044464,GO:0044877,GO:0045184,GO:0046483,GO:0046626,GO:0046907,GO:0048316,GO:0048366,GO:0048367,GO:0048518,GO:0048583,GO:0048608,GO:0048731,GO:0048825,GO:0048827,GO:0048856,GO:0050657,GO:0050658,GO:0050789,GO:0050794,GO:0051049,GO:0051168,GO:0051169,GO:0051179,GO:0051234,GO:0051236,GO:0051640,GO:0051641,GO:0051649,GO:0051656,GO:0061458,GO:0065007,GO:0065008,GO:0070013,GO:0070727,GO:0071166,GO:0071426,GO:0071428,GO:0071702,GO:0071704,GO:0071705,GO:0071840,GO:0090069,GO:0090070,GO:0090304,GO:0097159,GO:0097367,GO:0099402,GO:1900076,GO:1901265,GO:1901360,GO:1901363,GO:2000012
EggNOG free text desc.Large subunit GTPase 1
EggNOG OGsCOG1161@1,KOG1424@2759
COG Functional cat.U
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko03009
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionLsg1, cytoplasmic GTPase involved in the ribosome assembly
Ec32 orthologEc-06_000630.1
Exons1
Model size324
Cds size318
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931237.1741958-UTR-H-elongata_contig83033:368..3741622931237.1741958-UTR-H-elongata_contig83033:368..374Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig83033 369..374 +
1691679754.3738391-UTR-H-elongata_contig83033:368..3741691679754.3738391-UTR-H-elongata_contig83033:368..374Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig83033 369..374 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931237.1958175-CDS-H-elongata_contig83033:374..6921622931237.1958175-CDS-H-elongata_contig83033:374..692Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig83033 375..692 +
1691679754.3857863-CDS-H-elongata_contig83033:374..6921691679754.3857863-CDS-H-elongata_contig83033:374..692Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig83033 375..692 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig83033.15938.1prot_H-elongata_contig83033.15938.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig83033 375..692 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig83033.15938.1

>prot_H-elongata_contig83033.15938.1 ID=prot_H-elongata_contig83033.15938.1|Name=mRNA_H-elongata_contig83033.15938.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=106bp
MICAGVLPIMQMRNAMPPMTLIAKRIPRHILELTYTIKLPVLPENAKDVQ
GKLVLSPQQLLEAYCQARGMFRARALGESDMPRAARQILKDYTDGRLLFC
HPPAGL
back to top

mRNA from alignment at H-elongata_contig83033:369..692+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig83033.15938.1 ID=mRNA_H-elongata_contig83033.15938.1|Name=mRNA_H-elongata_contig83033.15938.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=324bp|location=Sequence derived from alignment at H-elongata_contig83033:369..692+ (Himanthalia elongata Himel1 dioecious)
GCGGAGATGATATGTGCTGGAGTGCTGCCCATTATGCAGATGCGCAACGC
CATGCCTCCGATGACTCTCATCGCAAAACGAATACCCCGACACATCCTGG
AGCTGACGTACACAATTAAGCTACCGGTGTTACCCGAAAACGCAAAGGAC
GTCCAAGGGAAGTTGGTCCTCTCGCCCCAACAGCTGTTAGAGGCTTACTG
TCAGGCCAGGGGGATGTTCAGAGCGCGGGCTCTTGGGGAGTCGGACATGC
CTCGTGCGGCGCGGCAGATCTTGAAGGACTACACCGACGGACGGCTCTTG
TTTTGTCATCCTCCGGCCGGATTG
back to top

Coding sequence (CDS) from alignment at H-elongata_contig83033:369..692+

>mRNA_H-elongata_contig83033.15938.1 ID=mRNA_H-elongata_contig83033.15938.1|Name=mRNA_H-elongata_contig83033.15938.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=636bp|location=Sequence derived from alignment at H-elongata_contig83033:369..692+ (Himanthalia elongata Himel1 dioecious)
ATGATATGTGCTGGAGTGCTGCCCATTATGCAGATGCGCAACGCCATGCC
TCCGATGACTCTCATCGCAAAACGAATACCCCGACACATCCTGGAGCTGA
CGTACACAATTAAGCTACCGGTGTTACCCGAAAACGCAAAGGACGTCCAA
GGGAAGTTGGTCCTCTCGCCCCAACAGCTGTTAGAGGCTTACTGTCAGGC
CAGGGGGATGTTCAGAGCGCGGGCTCTTGGGGAGTCGGACATGCCTCGTG
CGGCGCGGCAGATCTTGAAGGACTACACCGACGGACGGCTCTTGTTTTGT
CATCCTCCGGCCGGATTGATGATATGTGCTGGAGTGCTGCCCATTATGCA
GATGCGCAACGCCATGCCTCCGATGACTCTCATCGCAAAACGAATACCCC
GACACATCCTGGAGCTGACGTACACAATTAAGCTACCGGTGTTACCCGAA
AACGCAAAGGACGTCCAAGGGAAGTTGGTCCTCTCGCCCCAACAGCTGTT
AGAGGCTTACTGTCAGGCCAGGGGGATGTTCAGAGCGCGGGCTCTTGGGG
AGTCGGACATGCCTCGTGCGGCGCGGCAGATCTTGAAGGACTACACCGAC
GGACGGCTCTTGTTTTGTCATCCTCCGGCCGGATTG
back to top