mRNA_H-elongata_contig82999.15935.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig82999.15935.1 vs. uniprot
Match: D7FXR7_ECTSI (S-adenosyl-methyltransferase MraW n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FXR7_ECTSI) HSP 1 Score: 210 bits (534), Expect = 2.580e-64 Identity = 125/219 (57.08%), Postives = 145/219 (66.21%), Query Frame = 1
Query: 1 KAERGRFQAIRSNFADVGKAVRGCQLLRARTQEPAAAXXXXANDDVSRESGHDSAEVSPLVDGILVDLGVSSHQINERNRGFSFSSDGPLDMRMEG-----------------ASSRMEGDPAVDGADFGRR-------------NAADVVNFADEVDVREMVWRYGEEKRSTKIARAIVESRPITTTGHLAEVVGRCAPPKDRTKTLARVFQALRIEV 567
+AE GRFQA+RSNFA VG+AVR C+L+ Q+P A + + PLVDGILVDLGVSSHQI++ RGFSFS+DGPLDMRMEG ++SR D AV+ G +AADVVNFADE ++REMVWRYG+EKRSTKIARAIVE+RPI TTG LAEVVGRCAPPK+R KTLARVFQALRIEV
Sbjct: 62 EAEVGRFQAVRSNFAAVGRAVRECELM---LQQPPLAPEASTAPAPAAGVPPRTTSAGPLVDGILVDLGVSSHQIDDEARGFSFSADGPLDMRMEGTGDGDSVGERSGFGGVASTSREHEDRAVEKGGRGEGXXXXXXXXXXXXVSAADVVNFADESEIREMVWRYGDEKRSTKIARAIVENRPIATTGQLAEVVGRCAPPKERVKTLARVFQALRIEV 277
BLAST of mRNA_H-elongata_contig82999.15935.1 vs. uniprot
Match: A0A6H5J8S8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J8S8_9PHAE) HSP 1 Score: 189 bits (480), Expect = 1.280e-52 Identity = 127/272 (46.69%), Postives = 145/272 (53.31%), Query Frame = 1
Query: 1 KAERGRFQAIRSNFADVGKAVRGCQLLRARTQEPAAAXXXXANDDVSRESGHD-----------------------------------------------------SAEVSPLVDGILVDLGVSSHQINERNRGFSFSSDGPLDMRMEGA-----------------SSRMEGDPAVD------GADF-------GRRNAADVVNFADEVDVREMVWRYGEEKRSTKIARAIVESRPITTTGHLAEVVGRCAPPKDRTKTLARVFQALRIEV 567
+AE GRFQA+RSNFADVGKAVR C+LL Q+P + + PLVDGILVDLGVSSHQI++ RGFSFS+DGPLDMRMEG +S D AV+ G D G +AADVVN+ADE ++REMVWRYG+EKRSTKIARAIVE+RPI TTG LAEVVGRCAPPK+R KTLARVFQALRIEV
Sbjct: 438 EAEAGRFQAVRSNFADVGKAVRECELL---LQQPPLVPEAESPTSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPPRTTSAGPLVDGILVDLGVSSHQIDDGARGFSFSADGPLDMRMEGTGDGDSAGERSWFGGVAPTSTKHEDRAVEKGGRAGGGDXXXXRGSGGGISAADVVNYADESEIREMVWRYGDEKRSTKIARAIVENRPIATTGQLAEVVGRCAPPKERVKTLARVFQALRIEV 706
BLAST of mRNA_H-elongata_contig82999.15935.1 vs. uniprot
Match: A0A835Z182_9STRA (Ribosomal RNA small subunit methyltransferase H n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z182_9STRA) HSP 1 Score: 133 bits (334), Expect = 1.680e-34 Identity = 80/189 (42.33%), Postives = 113/189 (59.79%), Query Frame = 1
Query: 4 AERGRFQAIRSNFADVGKAVRGCQLLRARTQEPAAAXXXXANDDVSRESGHDSAEVSP-LVDGILVDLGVSSHQINERNRGFSFSSDGPLDMRMEGASSRMEGDPAVDGADFGRRNAADVVNFADEVDVREMVWRYGEEKRSTKIARAIVESRPITTTGHLAEVVGRCAPPKDRTKTLARVFQALRIEV 567
A+ GRF A+R+NF+ +A++ C LL+ + P+ S SG + P VDG+L+DLGVSSHQ++ RGFS+S+DGPLDMRM GA+ + +AAD+ N DE + +++++ GEEKRS +IA AIV +RP+ TT LA V P + K+L RVFQALRI+V
Sbjct: 60 ADAGRFAALRTNFSGAARALQSCPLLQQHSSSPS-----------SSGSGQPQESMPPPQVDGMLLDLGVSSHQLDSAARGFSYSADGPLDMRMAGATVKA------------LHSAADLCNELDERALGDVLFQLGEEKRSRRIAAAIVRARPLATTAQLAAAVRSAVPFTEERKSLTRVFQALRIKV 225
BLAST of mRNA_H-elongata_contig82999.15935.1 vs. uniprot
Match: A0A2T2UJS6_9BACT (Ribosomal RNA small subunit methyltransferase H n=2 Tax=unclassified Bacteroidetes TaxID=37452 RepID=A0A2T2UJS6_9BACT) HSP 1 Score: 127 bits (319), Expect = 3.950e-32 Identity = 69/133 (51.88%), Postives = 88/133 (66.17%), Query Frame = 1
Query: 169 VSPLVDGILVDLGVSSHQINERNRGFSFSSDGPLDMRMEGASSRMEGDPAVDGADFGRRNAADVVNFADEVDVREMVWRYGEEKRSTKIARAIVESRPITTTGHLAEVVGRCAPPKDRTKTLARVFQALRIEV 567
VS VDG+L+DLGVSSHQI+ RGFSF DGPLDMR + A GRR AA +VN E D++++ + YGEE+R+ ++ARA+ E+RP+ TTG LAEVV P + +TLARVFQALRI V
Sbjct: 113 VSTSVDGVLLDLGVSSHQIDAPERGFSFRKDGPLDMRFDAAR--------------GRRTAAQIVNDWTEADLKQLFYDYGEERRAPRVARAVCEARPLETTGALAEVVREAVIPPEEIQTLARVFQALRIAV 231
BLAST of mRNA_H-elongata_contig82999.15935.1 vs. uniprot
Match: A0A2T2V5E4_9BACT (Ribosomal RNA small subunit methyltransferase H n=1 Tax=Bacteroidetes bacterium QS_8_68_28 TaxID=1919110 RepID=A0A2T2V5E4_9BACT) HSP 1 Score: 125 bits (315), Expect = 1.560e-31 Identity = 83/187 (44.39%), Postives = 100/187 (53.48%), Query Frame = 1
Query: 7 ERGRFQAIRSNFADVGKAVRGCQLLRARTQEPAAAXXXXANDDVSRESGHDSAEVSPLVDGILVDLGVSSHQINERNRGFSFSSDGPLDMRMEGASSRMEGDPAVDGADFGRRNAADVVNFADEVDVREMVWRYGEEKRSTKIARAIVESRPITTTGHLAEVVGRCAPPKDRTKTLARVFQALRIEV 567
E GRF A+R NFA + V A VDG+L+DLGVSSHQI+ RGFSF DGPLDMRM+ EG GRR AA VVN E D++++++ YGEE R+ +IARA+ E+RP+ TG LAE V P D TKTLARVFQALRI V
Sbjct: 89 EAGRFVAVRGNFARLASLVEA------------------------------HAPGGGPVDGVLLDLGVSSHQIDAARRGFSFRKDGPLDMRMD-----REG---------GRRTAAQVVNDWPEDDLKQLLYDYGEEGRAPQIARAVCEARPLRGTGALAEAVRSAVIPPDETKTLARVFQALRIAV 231
BLAST of mRNA_H-elongata_contig82999.15935.1 vs. uniprot
Match: A0A2T2V0A7_9BACT (Ribosomal RNA small subunit methyltransferase H n=1 Tax=Bacteroidetes bacterium QS_9_68_14 TaxID=1919111 RepID=A0A2T2V0A7_9BACT) HSP 1 Score: 120 bits (302), Expect = 1.320e-29 Identity = 71/145 (48.97%), Postives = 92/145 (63.45%), Query Frame = 1
Query: 157 DSAEVSPL--------VDGILVDLGVSSHQINERNRGFSFSSDGPLDMRMEGASSRMEGDPAVDGADFGRRNAADVVNFADEVDVREMVWRYGEEKRSTKIARAIVESRPITTTGHLAEVVGRCAPPKDRTKTLARVFQALRIEV 567
D A+++PL VDG+L+DLGVSS Q++ RGFSF DGPLDMRM+ S GRR AA VV E ++ ++++ YGEE R+ ++ARAIVE+RP+ +TG LAE V P + TKTLARVFQALRI V
Sbjct: 103 DFAQLAPLAEEHAGAPVDGVLLDLGVSSRQLDAAERGFSFRKDGPLDMRMDRES--------------GRRTAAQVVGDWPEGELEQLLYDYGEEPRAPQVARAIVEARPLDSTGALAEAVRSATIPPEETKTLARVFQALRIAV 233
BLAST of mRNA_H-elongata_contig82999.15935.1 vs. uniprot
Match: D0MGL6_RHOM4 (Ribosomal RNA small subunit methyltransferase H n=4 Tax=Rhodothermus marinus TaxID=29549 RepID=D0MGL6_RHOM4) HSP 1 Score: 119 bits (298), Expect = 3.720e-29 Identity = 69/129 (53.49%), Postives = 86/129 (66.67%), Query Frame = 1
Query: 181 VDGILVDLGVSSHQINERNRGFSFSSDGPLDMRMEGASSRMEGDPAVDGADFGRRNAADVVNFADEVDVREMVWRYGEEKRSTKIARAIVESRPITTTGHLAEVVGRCAPPKDRTKTLARVFQALRIEV 567
+DG+L+DLGVSSHQ++E RGFSF ++GPLDMRM DP G AA ++ E ++ E++ RYGEE R+ K+ARAI +RPI TT LAEVV R PK+ TKTLARVFQALRI V
Sbjct: 113 IDGLLLDLGVSSHQLDEALRGFSFQAEGPLDMRM---------DPTSPGP-----TAAQLLERWSEYELAEVLRRYGEEPRARKLARAICRARPIRTTAELAEVVRREVSPKEATKTLARVFQALRIAV 227
BLAST of mRNA_H-elongata_contig82999.15935.1 vs. uniprot
Match: A0A7V2B220_RHOMR (Ribosomal RNA small subunit methyltransferase H n=2 Tax=Bacteria TaxID=2 RepID=A0A7V2B220_RHOMR) HSP 1 Score: 118 bits (295), Expect = 8.150e-29 Identity = 64/130 (49.23%), Postives = 87/130 (66.92%), Query Frame = 1
Query: 178 LVDGILVDLGVSSHQINERNRGFSFSSDGPLDMRMEGASSRMEGDPAVDGADFGRRNAADVVNFADEVDVREMVWRYGEEKRSTKIARAIVESRPITTTGHLAEVVGRCAPPKDRTKTLARVFQALRIEV 567
L+DG+L+DLGVSSHQ+++ RGFSF ++GPLDMRM+ + A ++ ++ E++ RYGEE R+ K+ARAI E+RP+TTT LAE++ R PPK+ TKTLARVFQALRI V
Sbjct: 106 LIDGLLLDLGVSSHQLDKAARGFSFQAEGPLDMRMDPSKGPT---------------AQQLLMRWSPQELAEVLRRYGEEPRAAKLARAICEARPVTTTAALAEIIRREVPPKEATKTLARVFQALRIAV 220
BLAST of mRNA_H-elongata_contig82999.15935.1 vs. uniprot
Match: A0A848XZ50_9BACT (Ribosomal RNA small subunit methyltransferase H n=1 Tax=Rhodothermaceae bacterium TaxID=2026787 RepID=A0A848XZ50_9BACT) HSP 1 Score: 118 bits (296), Expect = 9.410e-29 Identity = 65/129 (50.39%), Postives = 83/129 (64.34%), Query Frame = 1
Query: 181 VDGILVDLGVSSHQINERNRGFSFSSDGPLDMRMEGASSRMEGDPAVDGADFGRRNAADVVNFADEVDVREMVWRYGEEKRSTKIARAIVESRPITTTGHLAEVVGRCAPPKDRTKTLARVFQALRIEV 567
VDG+L+DLG+SSHQI+E RGF+FS+DGPLDMRM A+ AAD++N D + +++ YGEE R+ IA AIVE RP+ TTG LA+ V P ++ KTLARVFQALRI V
Sbjct: 126 VDGVLLDLGISSHQIDEAARGFAFSADGPLDMRMNAAAPET---------------AADLINTLDVQALTDLLRAYGEEPRAWPIANAIVEQRPLATTGDLADAVRSAVPTREEVKTLARVFQALRIAV 239
BLAST of mRNA_H-elongata_contig82999.15935.1 vs. uniprot
Match: A0A0M0J7W8_9EUKA (Ribosomal RNA small subunit methyltransferase h n=1 Tax=Chrysochromulina tobinii TaxID=1460289 RepID=A0A0M0J7W8_9EUKA) HSP 1 Score: 117 bits (294), Expect = 3.740e-28 Identity = 72/150 (48.00%), Postives = 94/150 (62.67%), Query Frame = 1
Query: 172 SPLVDGILVDLGVSSHQINERNRGFSFSSDGPLDMRM------EGASSRMEGDPAVD----GADFGRR----NAADVVNFADEVDVREMVWRYGEEKRSTKIARAIVESRPITTTGHLAEVVGRCAP----PKDRTKTLARVFQALRIEV 567
+PL+DG+L+DLGVSSHQ+NE +RGFSF DGPLDMRM G S GD V A+ RR AA +VN DE + +++W+YGEE+ S +IAR+IV +RP+ +T L EV+ PK+ L+RVFQALRIEV
Sbjct: 132 APLLDGMLLDLGVSSHQLNEPSRGFSFMRDGPLDMRMAQTATASGTDSNSSGDGGVRLDVRDAERARRAEPLTAATIVNQWDEKALADVLWKYGEERESRRIARSIVAARPLHSTAELVEVLKTAGTKNYEPKEVRNRLSRVFQALRIEV 281 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig82999.15935.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig82999.15935.1 >prot_H-elongata_contig82999.15935.1 ID=prot_H-elongata_contig82999.15935.1|Name=mRNA_H-elongata_contig82999.15935.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=189bp KAERGRFQAIRSNFADVGKAVRGCQLLRARTQEPAAAAAAAANDDVSRESback to top mRNA from alignment at H-elongata_contig82999:94..1577- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig82999.15935.1 ID=mRNA_H-elongata_contig82999.15935.1|Name=mRNA_H-elongata_contig82999.15935.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1484bp|location=Sequence derived from alignment at H-elongata_contig82999:94..1577- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig82999:94..1577- >mRNA_H-elongata_contig82999.15935.1 ID=mRNA_H-elongata_contig82999.15935.1|Name=mRNA_H-elongata_contig82999.15935.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1134bp|location=Sequence derived from alignment at H-elongata_contig82999:94..1577- (Himanthalia elongata Himel1 dioecious)back to top |