mRNA_H-elongata_contig8288.15926.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig8288.15926.1
Unique NamemRNA_H-elongata_contig8288.15926.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig8288.15926.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig8288contigH-elongata_contig8288:3475..4663 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size301
Cds size300
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig8288.15926.1prot_H-elongata_contig8288.15926.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig8288 3475..4663 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931235.2398612-CDS-H-elongata_contig8288:3474..35941622931235.2398612-CDS-H-elongata_contig8288:3474..3594Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig8288 3475..3594 +
1691679753.5555675-CDS-H-elongata_contig8288:3474..35941691679753.5555675-CDS-H-elongata_contig8288:3474..3594Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig8288 3475..3594 +
1622931235.2579367-CDS-H-elongata_contig8288:4161..42561622931235.2579367-CDS-H-elongata_contig8288:4161..4256Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig8288 4162..4256 +
1691679753.5633914-CDS-H-elongata_contig8288:4161..42561691679753.5633914-CDS-H-elongata_contig8288:4161..4256Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig8288 4162..4256 +
1622931235.2719116-CDS-H-elongata_contig8288:4578..46631622931235.2719116-CDS-H-elongata_contig8288:4578..4663Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig8288 4579..4663 +
1691679753.57144-CDS-H-elongata_contig8288:4578..46631691679753.57144-CDS-H-elongata_contig8288:4578..4663Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig8288 4579..4663 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig8288.15926.1

>prot_H-elongata_contig8288.15926.1 ID=prot_H-elongata_contig8288.15926.1|Name=mRNA_H-elongata_contig8288.15926.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=100bp
AEDDTFGDVENRRRKKLSRAELEKAVEERKRTRSAGIERQMANVSKSMEE
QLNLLREEAEGDLERLEQGSLGSVDYSSTNPSTDESPDSRGSSHDILLR*
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mRNA from alignment at H-elongata_contig8288:3475..4663+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig8288.15926.1 ID=mRNA_H-elongata_contig8288.15926.1|Name=mRNA_H-elongata_contig8288.15926.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1189bp|location=Sequence derived from alignment at H-elongata_contig8288:3475..4663+ (Himanthalia elongata Himel1 dioecious)
GCCGAAGACGACACATTCGGTGATGTGGAAAACAGGAGGAGGAAGAAATT
GTCGCGGGCCGAGCTCGAGAAGGCCGTTGAGGAACGGAAGCGAACTCGGT
CTGCCGGTATCGAGAGACAGGCCAGTTAACACCTTCACTTCAAAGCTATA
ACTTTATTTTGCTTTTAAAGCGACGGCGTTACAAAGAACGGTACTACACA
TAGTTTCAGAAGGTATAATTTCTGCCTACGGCCTATGATCATTATAGAGC
ATATCGTGGGTGACAAACGATGCAATATTATGAGCTTATATGTAATATAA
CATCGAACTTACACATCCCGGCGATTAATATTTCTCCTCCACCATTCTTT
TCTGAACTATAAAGGCATCAACGACATGGTTATATTTACTGTTGTACCTT
TGGTGTTTTTTAAAGCTAACAAGATCTATCTCTATACATAAAAATATCTT
CCCTACTTGTATCGATTGTTGTTGCAGTATATCCGAACACGTGGTAGTTG
CGGAAAACCGAGCGGGGATGCGCACACCTACAGTTCGCACGTAGAATACC
ATATATAGAAATGCAGTAGGCGTCTCCTCCGAACGGCAAACAAACGTGAA
GTCGACCTTGCTTCGTCGGCTACTTATGTAGCCTCCTCCATATACATCCC
CCGTTCGCCGTTGGATGCGTGGTTTTGTCCGAAACAGATGGCGAACGTGT
CGAAGTCCATGGAAGAGCAGCTGAACCTGCTGCGTGAGGAGGCGGAGGGA
GACCTCGAGAGGCTCGAGCAAGGCTCCCTTGGGTACGTCTGTGTCTTTGT
GTTTGAGTGGAAACCCGGAATCGGATATGCAGTGTGCGCGTGCGCACATG
TCTATCGGCCTGTCTTTTCCCCCTCCCTCCCTCCCTCCCTCCCTCCCCAT
TCGGACAACAAACTTTCCTGACAGTTGGGCCCTACAGCCCCGAACGAAGG
GGGTGTAATGGCTGGCCATACCTTTAGCGCCCTCAACGAGTCAATTTTGA
GTCGGAGCAAGCCACACGCAGAGCGCGCCTGTGCACACAAGACCCCACCT
CCTGCCTGTTTATACTCCCCGTCGTTGATGACTGCGGGTACCGAAATCCT
CCAGGAGCGTGGACTACAGCTCGACCAATCCCTCGACGGACGAAAGTCCA
GACTCTCGCGGATCCTCTCACGACATCCTTCTGCGGTAG
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Coding sequence (CDS) from alignment at H-elongata_contig8288:3475..4663+

>mRNA_H-elongata_contig8288.15926.1 ID=mRNA_H-elongata_contig8288.15926.1|Name=mRNA_H-elongata_contig8288.15926.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=600bp|location=Sequence derived from alignment at H-elongata_contig8288:3475..4663+ (Himanthalia elongata Himel1 dioecious)
GCCGAAGACGACACATTCGGTGATGTGGAAAACAGGAGGAGGAAGAAATT
GTCGCGGGCCGAGCTCGAGAAGGCCGTTGAGGAACGGAAGCGAACTCGGT
CTGCCGGTATCGAGAGACAGGCCGAAGACGACACATTCGGTGATGTGGAA
AACAGGAGGAGGAAGAAATTGTCGCGGGCCGAGCTCGAGAAGGCCGTTGA
GGAACGGAAGCGAACTCGGTCTGCCGGTATCGAGAGACAGATGGCGAACG
TGTCGAAGTCCATGGAAGAGCAGCTGAACCTGCTGCGTGAGGAGGCGGAG
GGAGACCTCGAGAGGCTCGAGCAAGGCTCCCTTGGATGGCGAACGTGTCG
AAGTCCATGGAAGAGCAGCTGAACCTGCTGCGTGAGGAGGCGGAGGGAGA
CCTCGAGAGGCTCGAGCAAGGCTCCCTTGGGAGCGTGGACTACAGCTCGA
CCAATCCCTCGACGGACGAAAGTCCAGACTCTCGCGGATCCTCTCACGAC
ATCCTTCTGCGGTAGGAGCGTGGACTACAGCTCGACCAATCCCTCGACGG
ACGAAAGTCCAGACTCTCGCGGATCCTCTCACGACATCCTTCTGCGGTAG
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