mRNA_H-elongata_contig82794.15919.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig82794.15919.1
Unique NamemRNA_H-elongata_contig82794.15919.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
[Close]
BLAST of mRNA_H-elongata_contig82794.15919.1 vs. uniprot
Match: D8LFW0_ECTSI (SURP motif domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LFW0_ECTSI)

HSP 1 Score: 67.4 bits (163), Expect = 6.990e-12
Identity = 41/56 (73.21%), Postives = 45/56 (80.36%), Query Frame = 1 
Query:    1 QVERIVRLWESKGVYTTAECNGLLAAAAAVTAKHASAKALASKAARVL-ERAGGGG 165
            +VERIVRLW S GV+T AEC+ LLAA A VTAKHASAKA+A KAA  L ERAG GG
Sbjct:  246 KVERIVRLWGSNGVFTPAECDSLLAAGAGVTAKHASAKAMAKKAAHGLRERAGRGG 301
[Close]
BLAST of mRNA_H-elongata_contig82794.15919.1 vs. uniprot
Match: A0A6H5J830_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J830_9PHAE)

HSP 1 Score: 67.4 bits (163), Expect = 9.770e-12
Identity = 41/56 (73.21%), Postives = 45/56 (80.36%), Query Frame = 1 
Query:    1 QVERIVRLWESKGVYTTAECNGLLAAAAAVTAKHASAKALASKAARVL-ERAGGGG 165
            +VERIVRLW S GV+T AEC+ LLAA A VTAKHASAKA+A KAA  L ERAG GG
Sbjct:  266 KVERIVRLWGSNGVFTPAECDSLLAAGAGVTAKHASAKAMAKKAANGLRERAGRGG 321
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig82794.15919.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LFW0_ECTSI6.990e-1273.21SURP motif domain-containing protein n=1 Tax=Ectoc... [more]
A0A6H5J830_9PHAE9.770e-1273.21Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig82794contigH-elongata_contig82794:2049..2213 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score68.9
Seed ortholog evalue8.2e-10
Seed eggNOG ortholog2880.D8LFW0
EggNOG free text desc.Suppressor-of-White-APricot splicing regulator
EggNOG OGs2D0I3@1,2SEA2@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryno signal peptide or anchor
Ec32 ortholog descriptionG-patch domain
Ec32 orthologEc-05_005330.2
Exons1
Model size165
Cds size165
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931234.3637514-CDS-H-elongata_contig82794:2048..22131622931234.3637514-CDS-H-elongata_contig82794:2048..2213Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig82794 2049..2213 +
1691679753.1979918-CDS-H-elongata_contig82794:2048..22131691679753.1979918-CDS-H-elongata_contig82794:2048..2213Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig82794 2049..2213 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig82794.15919.1prot_H-elongata_contig82794.15919.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig82794 2049..2213 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig82794.15919.1

>prot_H-elongata_contig82794.15919.1 ID=prot_H-elongata_contig82794.15919.1|Name=mRNA_H-elongata_contig82794.15919.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=55bp
QVERIVRLWESKGVYTTAECNGLLAAAAAVTAKHASAKALASKAARVLER
AGGGG
back to top

mRNA from alignment at H-elongata_contig82794:2049..2213+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig82794.15919.1 ID=mRNA_H-elongata_contig82794.15919.1|Name=mRNA_H-elongata_contig82794.15919.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=165bp|location=Sequence derived from alignment at H-elongata_contig82794:2049..2213+ (Himanthalia elongata Himel1 dioecious)
CAGGTGGAGCGCATCGTTCGTCTATGGGAATCCAAAGGCGTCTATACCAC
CGCGGAATGCAACGGCCTCCTCGCTGCCGCCGCCGCTGTAACCGCCAAAC
ACGCCTCCGCGAAGGCGTTGGCCAGCAAGGCAGCCCGGGTCTTGGAGCGG
GCTGGCGGCGGGGGA
back to top

Coding sequence (CDS) from alignment at H-elongata_contig82794:2049..2213+

>mRNA_H-elongata_contig82794.15919.1 ID=mRNA_H-elongata_contig82794.15919.1|Name=mRNA_H-elongata_contig82794.15919.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=330bp|location=Sequence derived from alignment at H-elongata_contig82794:2049..2213+ (Himanthalia elongata Himel1 dioecious)
CAGGTGGAGCGCATCGTTCGTCTATGGGAATCCAAAGGCGTCTATACCAC
CGCGGAATGCAACGGCCTCCTCGCTGCCGCCGCCGCTGTAACCGCCAAAC
ACGCCTCCGCGAAGGCGTTGGCCAGCAAGGCAGCCCGGGTCTTGGAGCGG
GCTGGCGGCGGGGGACAGGTGGAGCGCATCGTTCGTCTATGGGAATCCAA
AGGCGTCTATACCACCGCGGAATGCAACGGCCTCCTCGCTGCCGCCGCCG
CTGTAACCGCCAAACACGCCTCCGCGAAGGCGTTGGCCAGCAAGGCAGCC
CGGGTCTTGGAGCGGGCTGGCGGCGGGGGA
back to top