mRNA_H-elongata_contig8279.15917.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig8279.15917.1
Unique NamemRNA_H-elongata_contig8279.15917.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
[Close]
BLAST of mRNA_H-elongata_contig8279.15917.1 vs. uniprot
Match: A0A097IUQ0_9PHAE (Malate dehydrogenase n=8 Tax=Sargassum TaxID=3015 RepID=A0A097IUQ0_9PHAE)

HSP 1 Score: 613 bits (1580), Expect = 2.750e-217
Identity = 309/349 (88.54%), Postives = 329/349 (94.27%), Query Frame = 3 
Query:   78 MSAVTRFYPVVKSAAPMASKAVGVCSVRSFGGTARCLNKVTVVGAAGGIGQPMSLLMKLSGKIDHLSLFDIVNSPGVAADVAHCNTKGKVVGYKGAEEMASALDGSDIVVIPAGVPRKPGMTRDDLFNTNASIVKGIAEQCAKSCPKACYLIISNPVNSTVPIFADVLKAAGVYDPAKLMGVTTLDVVRAKTFVAENQGMDVDAVEVDVIGGHAGTTIMPLLSQVKGAKFTEEDIKALTHRIQFGGDEVVKAKDGAGSATLSMAHAGAYFAEKVLDGLNGVKGIRECTFVESALTEAPFFASPCTLGTEGVSEVHTYGQLTPFEQALVDENVPALIKMAQKGSDFVKNH 1124
            MS VTR  P+ K AAPM S+AVG+ SVR+F GT R  NKVTVVGAAGGIGQPMSLLMKLSGKIDHLSLFDIVN+PGVAAD+ HCN+KGKV+GYKGAEEMA++LDGSD+VVIPAGVPRKPGMTRDDLFNTNASIVKGIAEQCAKSCPKAC+LIISNPVNSTVPIFA+VLKA+GVYDPAKLMGVTTLDV RAKTFVAENQGMDVD VEVDVIGGHAGTTIMPLLSQVKGA FTEEDIK LTHRIQFGGDEVVKAKDGAGSATLSMAHAGAYFAEKVLDGLNGVKGI+ECTFVES LT APFFASPCTLGTEGVSE+H YGQL+PFEQALVDENVPAL+KM+QKG DFVKN+
Sbjct:    1 MSVVTRTRPLAKMAAPMVSRAVGISSVRAFSGTPRVQNKVTVVGAAGGIGQPMSLLMKLSGKIDHLSLFDIVNTPGVAADIGHCNSKGKVMGYKGAEEMAASLDGSDVVVIPAGVPRKPGMTRDDLFNTNASIVKGIAEQCAKSCPKACFLIISNPVNSTVPIFAEVLKASGVYDPAKLMGVTTLDVARAKTFVAENQGMDVDKVEVDVIGGHAGTTIMPLLSQVKGANFTEEDIKTLTHRIQFGGDEVVKAKDGAGSATLSMAHAGAYFAEKVLDGLNGVKGIKECTFVESPLTSAPFFASPCTLGTEGVSEIHGYGQLSPFEQALVDENVPALVKMSQKGIDFVKNN 349
[Close]
BLAST of mRNA_H-elongata_contig8279.15917.1 vs. uniprot
Match: D8LQM3_ECTSI (Malate dehydrogenase n=7 Tax=Eukaryota TaxID=2759 RepID=D8LQM3_ECTSI)

HSP 1 Score: 574 bits (1479), Expect = 6.210e-202
Identity = 290/349 (83.09%), Postives = 322/349 (92.26%), Query Frame = 3 
Query:   78 MSAVTRFYPVVKSAAPMASKAVGVCSVRSFGGTARCLNKVTVVGAAGGIGQPMSLLMKLSGKIDHLSLFDIVNSPGVAADVAHCNTKGKVVGYKGAEEMASALDGSDIVVIPAGVPRKPGMTRDDLFNTNASIVKGIAEQCAKSCPKACYLIISNPVNSTVPIFADVLKAAGVYDPAKLMGVTTLDVVRAKTFVAENQGMDVDAVEVDVIGGHAGTTIMPLLSQVKGAKFTEEDIKALTHRIQFGGDEVVKAKDGAGSATLSMAHAGAYFAEKVLDGLNGVKGIRECTFVESALTEAPFFASPCTLGTEGVSEVHTYGQLTPFEQALVDENVPALIKMAQKGSDFVKNH 1124
            MSAV R     K AAPMASKA+GV S R F GTAR  NKVTVVGAAGGIGQPMSLL+KLSGK++HLSLFDIVN+PGVAAD++HCN+KGKV G+KGAEEMA+ALDG+D+VVIPAGVPRKPGMTRDDLFNTNASIVKGIAEQC+KSCPKAC+LIISNPVNSTVPIFADVLKA GVY+P KLMGVTTLDV RA+TF+AENQGMDVD ++V VIGGHAGTTIMPLLSQV+GAKF++EDIKALTHRIQFGGDEVV+AKDGAGSATLSMAHAGAYFA KVLDGLNGV+G+ EC FVES LTEAPFFASPCTLG +GVS+VH +G L+ FEQALVD+NVPAL+KMAQKGSDFVKN+
Sbjct:    1 MSAVARIQLASKVAAPMASKALGVSSSRFFTGTARAQNKVTVVGAAGGIGQPMSLLLKLSGKVEHLSLFDIVNTPGVAADISHCNSKGKVTGHKGAEEMATALDGADVVVIPAGVPRKPGMTRDDLFNTNASIVKGIAEQCSKSCPKACFLIISNPVNSTVPIFADVLKANGVYNPQKLMGVTTLDVCRAQTFIAENQGMDVDKLDVTVIGGHAGTTIMPLLSQVEGAKFSDEDIKALTHRIQFGGDEVVQAKDGAGSATLSMAHAGAYFAGKVLDGLNGVEGVTECAFVESDLTEAPFFASPCTLGKDGVSKVHGFGNLSSFEQALVDDNVPALVKMAQKGSDFVKNN 349
[Close]
BLAST of mRNA_H-elongata_contig8279.15917.1 vs. uniprot
Match: A0A097IUP2_9PHAE (Malate dehydrogenase n=1 Tax=Dictyopteris undulata TaxID=156997 RepID=A0A097IUP2_9PHAE)

HSP 1 Score: 568 bits (1465), Expect = 8.630e-200
Identity = 288/350 (82.29%), Postives = 317/350 (90.57%), Query Frame = 3 
Query:   78 MSAVT-RFYPVVKSAAPMASKAVGVCSVRSFGGTARCLNKVTVVGAAGGIGQPMSLLMKLSGKIDHLSLFDIVNSPGVAADVAHCNTKGKVVGYKGAEEMASALDGSDIVVIPAGVPRKPGMTRDDLFNTNASIVKGIAEQCAKSCPKACYLIISNPVNSTVPIFADVLKAAGVYDPAKLMGVTTLDVVRAKTFVAENQGMDVDAVEVDVIGGHAGTTIMPLLSQVKGAKFTEEDIKALTHRIQFGGDEVVKAKDGAGSATLSMAHAGAYFAEKVLDGLNGVKGIRECTFVESALTEAPFFASPCTLGTEGVSEVHTYGQLTPFEQALVDENVPALIKMAQKGSDFVKNH 1124
            MSA+T R  PV +  AP+A KA+GV + RSF  +AR  NKV VVGAAGGIGQPMSLLMKLSGKI+HLSLFDIVN+PGVAAD++HCNTKGKV  +KG EEM +ALDG D+VVIPAGVPRKPGMTRDDLFNTNASIVKGIAEQCAKSCP AC+LIISNPVNSTVPIF DVLK AGV+DP KLMGVT LD+ RA TFVAENQGMDVD V VDVIGGHAGTTIMPLLSQVKGAKF+EEDIKALTHRIQFGGDEVVKAKDGAGSATLSMAHAGAYFAE+VLDGLNG  G++ECTFVES+LT+AP+FASPCTLG EGVSEVH +G L+PFEQ+LVDENVPALIKMA+KG+DFVKN+
Sbjct:    1 MSALTARIQPVARMVAPVALKALGVSATRSFTASARAKNKVAVVGAAGGIGQPMSLLMKLSGKIEHLSLFDIVNTPGVAADLSHCNTKGKVSAHKGPEEMGAALDGCDLVVIPAGVPRKPGMTRDDLFNTNASIVKGIAEQCAKSCPNACFLIISNPVNSTVPIFGDVLKTAGVFDPRKLMGVTMLDICRANTFVAENQGMDVDKVSVDVIGGHAGTTIMPLLSQVKGAKFSEEDIKALTHRIQFGGDEVVKAKDGAGSATLSMAHAGAYFAERVLDGLNGATGVKECTFVESSLTDAPYFASPCTLGKEGVSEVHGFGTLSPFEQSLVDENVPALIKMAKKGTDFVKNN 350
[Close]
BLAST of mRNA_H-elongata_contig8279.15917.1 vs. uniprot
Match: A0A097IUN2_SACJA (Malate dehydrogenase n=3 Tax=Laminariales TaxID=2886 RepID=A0A097IUN2_SACJA)

HSP 1 Score: 567 bits (1461), Expect = 3.370e-199
Identity = 287/349 (82.23%), Postives = 318/349 (91.12%), Query Frame = 3 
Query:   78 MSAVTRFYPVVKSAAPMASKAVGVCSVRSFGGTARCLNKVTVVGAAGGIGQPMSLLMKLSGKIDHLSLFDIVNSPGVAADVAHCNTKGKVVGYKGAEEMASALDGSDIVVIPAGVPRKPGMTRDDLFNTNASIVKGIAEQCAKSCPKACYLIISNPVNSTVPIFADVLKAAGVYDPAKLMGVTTLDVVRAKTFVAENQGMDVDAVEVDVIGGHAGTTIMPLLSQVKGAKFTEEDIKALTHRIQFGGDEVVKAKDGAGSATLSMAHAGAYFAEKVLDGLNGVKGIRECTFVESALTEAPFFASPCTLGTEGVSEVHTYGQLTPFEQALVDENVPALIKMAQKGSDFVKNH 1124
            MSA+ R  P+ K AAPMASKA+GV S R+F GTAR  NKVTVVGAAGGIGQPMSLL+KLSGKI+HLSLFDIVN+PGVAAD++HC+ K KV G+KGAEEM +ALDGSDIVVIPAGVPRKPGMTRDDLFNTNASIVKGIAEQ +KSCP AC LIISNPVNSTVPIFADVLKA GVY+P KLMGVTTLDVVRAKTFVAE+QGMDV  ++VDVIGGHAGTTIMPLLSQVKGAKFTEEDI ALTHRIQFGGDEVV+AKDGAGSATLSMAHAGAYFA +VLDGLNG K ++ECTFV+  LT+APFFASPCTLGT+GVS++H +  LTPFEQ+LVDENVP+LI MA+KGSDFVKN+
Sbjct:    1 MSAIARVQPLAKLAAPMASKALGVSSSRAFTGTARAQNKVTVVGAAGGIGQPMSLLLKLSGKIEHLSLFDIVNTPGVAADISHCDAKAKVTGHKGAEEMGAALDGSDIVVIPAGVPRKPGMTRDDLFNTNASIVKGIAEQVSKSCPNACILIISNPVNSTVPIFADVLKANGVYNPQKLMGVTTLDVVRAKTFVAEHQGMDVSKIKVDVIGGHAGTTIMPLLSQVKGAKFTEEDIAALTHRIQFGGDEVVQAKDGAGSATLSMAHAGAYFAGRVLDGLNGKKNVKECTFVDCDLTDAPFFASPCTLGTDGVSKIHGFSNLTPFEQSLVDENVPSLISMAKKGSDFVKNN 349
[Close]
BLAST of mRNA_H-elongata_contig8279.15917.1 vs. uniprot
Match: A0A097IUM5_9PHAE (Malate dehydrogenase n=1 Tax=Desmarestia viridis TaxID=62313 RepID=A0A097IUM5_9PHAE)

HSP 1 Score: 560 bits (1442), Expect = 2.600e-196
Identity = 281/349 (80.52%), Postives = 319/349 (91.40%), Query Frame = 3 
Query:   78 MSAVTRFYPVVKSAAPMASKAVGVCSVRSFGGTARCLNKVTVVGAAGGIGQPMSLLMKLSGKIDHLSLFDIVNSPGVAADVAHCNTKGKVVGYKGAEEMASALDGSDIVVIPAGVPRKPGMTRDDLFNTNASIVKGIAEQCAKSCPKACYLIISNPVNSTVPIFADVLKAAGVYDPAKLMGVTTLDVVRAKTFVAENQGMDVDAVEVDVIGGHAGTTIMPLLSQVKGAKFTEEDIKALTHRIQFGGDEVVKAKDGAGSATLSMAHAGAYFAEKVLDGLNGVKGIRECTFVESALTEAPFFASPCTLGTEGVSEVHTYGQLTPFEQALVDENVPALIKMAQKGSDFVKNH 1124
            MSAV R  P+V+ AAP ASKA+GV + RSF GTAR  NKV VVGAAGGIGQ MSLL+KLSGKI HLSLFDIVN+PGVAAD++HCN++GKV G+KGAEEM +ALDG+DIVVIPAGVPRKPGMTRDDLFNTNASIVKGIAEQC+KSCP AC+LIISNPVNSTVPIF DVLKA GV++PAKLMGVT+LDVVRAKTFVAE+QG+DV  ++VDVIGGHAGTTI+PLLS+VKGA FTEEDIKALTHRIQFGGDEVV+AKDGAGSATLSMAHAGAYFA +VLDGLNGVK ++ECTFVE  LT+APFFASPCTLG +GVS++H + +LTPFEQALVD+NVP LI MA+KGS+FVKN+
Sbjct:    1 MSAVARASPLVRMAAPTASKAIGVSAARSFTGTARAQNKVAVVGAAGGIGQSMSLLLKLSGKIGHLSLFDIVNTPGVAADISHCNSEGKVTGHKGAEEMGTALDGADIVVIPAGVPRKPGMTRDDLFNTNASIVKGIAEQCSKSCPNACFLIISNPVNSTVPIFGDVLKANGVFNPAKLMGVTSLDVVRAKTFVAEHQGLDVSKMKVDVIGGHAGTTIIPLLSKVKGADFTEEDIKALTHRIQFGGDEVVQAKDGAGSATLSMAHAGAYFAGRVLDGLNGVKNVKECTFVECDLTDAPFFASPCTLGKDGVSKIHGFSKLTPFEQALVDDNVPTLINMAKKGSEFVKNN 349
[Close]
BLAST of mRNA_H-elongata_contig8279.15917.1 vs. uniprot
Match: A0A097IUM6_9PHAE (Malate dehydrogenase n=1 Tax=Punctaria latifolia TaxID=90013 RepID=A0A097IUM6_9PHAE)

HSP 1 Score: 551 bits (1420), Expect = 5.710e-193
Identity = 280/349 (80.23%), Postives = 315/349 (90.26%), Query Frame = 3 
Query:   78 MSAVTRFYPVVKSAAPMASKAVGVCSVRSFGGTARCLNKVTVVGAAGGIGQPMSLLMKLSGKIDHLSLFDIVNSPGVAADVAHCNTKGKVVGYKGAEEMASALDGSDIVVIPAGVPRKPGMTRDDLFNTNASIVKGIAEQCAKSCPKACYLIISNPVNSTVPIFADVLKAAGVYDPAKLMGVTTLDVVRAKTFVAENQGMDVDAVEVDVIGGHAGTTIMPLLSQVKGAKFTEEDIKALTHRIQFGGDEVVKAKDGAGSATLSMAHAGAYFAEKVLDGLNGVKGIRECTFVESALTEAPFFASPCTLGTEGVSEVHTYGQLTPFEQALVDENVPALIKMAQKGSDFVKNH 1124
            MSA+ R     + AAP+ASKAVGV + RSF GTAR  NKVTVVGAAGGIGQPMSLL+KLSGKI+HLSLFDIVN+PGVAAD++HCN+KGKV G+KGAEEMA+ALDG+DIVVIPAGVPRKPGMTRDDLFNTNASIVKGIA+QC+KSCP AC+LIISNPVNSTVPIFADVLKA GVY+P KLMGVTTLDV RAKTFVAENQGMDVD V+V V+GGHAGTTIMPLLSQV+GAKF+EEDIKALTHRIQFGGDEVV+AKDGAGSATLSMAHAGAYFA KVLDGLNGV+G++EC FVES LT+APFFASP +LG +GVS+VH +  L+ FEQ+LVDENVPAL+K A     FVK++
Sbjct:    1 MSAIARVQMASRLAAPIASKAVGVSAARSFTGTARAQNKVTVVGAAGGIGQPMSLLLKLSGKIEHLSLFDIVNTPGVAADISHCNSKGKVTGHKGAEEMATALDGADIVVIPAGVPRKPGMTRDDLFNTNASIVKGIADQCSKSCPNACFLIISNPVNSTVPIFADVLKANGVYNPQKLMGVTTLDVCRAKTFVAENQGMDVDKVDVTVVGGHAGTTIMPLLSQVEGAKFSEEDIKALTHRIQFGGDEVVQAKDGAGSATLSMAHAGAYFAGKVLDGLNGVQGVKECAFVESDLTDAPFFASPVSLGKDGVSKVHGFSNLSAFEQSLVDENVPALMKQAXXXXXFVKSN 349
[Close]
BLAST of mRNA_H-elongata_contig8279.15917.1 vs. uniprot
Match: A0A097IUI7_9PHAE (Malate dehydrogenase n=1 Tax=Ishige okamurae TaxID=233772 RepID=A0A097IUI7_9PHAE)

HSP 1 Score: 538 bits (1386), Expect = 9.280e-188
Identity = 273/347 (78.67%), Postives = 305/347 (87.90%), Query Frame = 3 
Query:   81 SAVTRFYPVVKSAAPMASKAVGVCSVRSFGGTARCLNKVTVVGAAGGIGQPMSLLMKLSGKIDHLSLFDIVNSPGVAADVAHCNTKGKVVGYKGAEEMASALDGSDIVVIPAGVPRKPGMTRDDLFNTNASIVKGIAEQCAKSCPKACYLIISNPVNSTVPIFADVLKAAGVYDPAKLMGVTTLDVVRAKTFVAENQGMDVDAVEVDVIGGHAGTTIMPLLSQVKGAKFTEEDIKALTHRIQFGGDEVVKAKDGAGSATLSMAHAGAYFAEKVLDGLNGVKGIRECTFVESALTEAPFFASPCTLGTEGVSEVHTYGQLTPFEQALVDENVPALIKMAQKGSDFVKN 1121
            S  +R   + + AAP ASKAVG+ + R+F  +    NKV VVGAAGGIGQPMSLL+KLSGKI+HLSLFDIVN+PGVAAD+ HCNT GKV  + G EEM++ALDG DIVVIPAGVPRKPGM+RDDLFNTNASIVKGIAEQCAKSCPKAC+LIISNPVNSTVPIFADVLK+AGV+ P KLMGVTTLDV RAKTFVAENQGMDVD VEVDVIGGHAGTTIMPLLSQ+ GAKF++EDIKALTHRIQFGGDEVVKAKDGAGSATLSMAHAGAYFA +VLDGL+G   I+ECTFVE  +T+APFFASPCTLG EGVSE+H +  L+ FEQALVD+NV +L KMA+KGSDFVKN
Sbjct:    4 SIASRVSSITRMAAPTASKAVGISASRTFTSSTTAQNKVAVVGAAGGIGQPMSLLLKLSGKIEHLSLFDIVNTPGVAADIGHCNTHGKVTSHTGPEEMSTALDGCDIVVIPAGVPRKPGMSRDDLFNTNASIVKGIAEQCAKSCPKACFLIISNPVNSTVPIFADVLKSAGVFHPGKLMGVTTLDVCRAKTFVAENQGMDVDKVEVDVIGGHAGTTIMPLLSQIPGAKFSDEDIKALTHRIQFGGDEVVKAKDGAGSATLSMAHAGAYFAGRVLDGLDGQADIKECTFVECDITDAPFFASPCTLGKEGVSEIHGFKNLSSFEQALVDDNVDSLKKMAKKGSDFVKN 350
[Close]
BLAST of mRNA_H-elongata_contig8279.15917.1 vs. uniprot
Match: A0A835YGB7_9STRA (Malate dehydrogenase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YGB7_9STRA)

HSP 1 Score: 469 bits (1206), Expect = 1.580e-160
Identity = 236/338 (69.82%), Postives = 285/338 (84.32%), Query Frame = 3 
Query:  102 PVVKSAAPMASKAVGVCSVRSFGGTARCLNKVTVVGAAGGIGQPMSLLMKLSGKIDHLSLFDIVNSPGVAADVAHCNTKGKVVGYKGAEEMASALDGSDIVVIPAGVPRKPGMTRDDLFNTNASIVKGIAEQCAKSCPKACYLIISNPVNSTVPIFADVLKAAGVYDPAKLMGVTTLDVVRAKTFVAENQGMDVDAVEVDVIGGHAGTTIMPLLSQVKGAKFTEEDIKALTHRIQFGGDEVVKAKDGAGSATLSMAHAGAYFAEKVLDGLNGVKGIRECTFVESALTEAPFFASPCTLGTEGVSEVHTYGQLTPFEQALVDENVPALIKMAQKGSDFV 1115
            P ++ A+P+A++A+G+ + RSF  +     KVTVVGAAGGIGQP+SLL+KLSGK+DHLSL+D+V +PGVAAD++HCNT GKV G+KGA E+ +AL  +D+VVIPAGVPRKPGMTRDDLFNTNA IVKGIAE CA++CPKA +LIISNPVNSTVPIFA+VLK  GVYD  KLMGVTTLDV RA+TFVAEN G  V+   VDVIGGHAGTTI+PLLSQV+GAKF+++D++ALTHRIQFGGDEVVKAKDGAGSATLSMAHAGAYFA +VL  + G   IRECTFVE+ LT AP+FA+P  LG +GV +V  +G+L+ FEQ ++DENVPAL   A+KG DFV
Sbjct:    7 PALRVASPLATRALGLEAARSFSSSRSAQAKVTVVGAAGGIGQPLSLLLKLSGKVDHLSLYDLVGTPGVAADLSHCNTNGKVTGHKGASELKAALQDADVVVIPAGVPRKPGMTRDDLFNTNAGIVKGIAEACAEACPKARFLIISNPVNSTVPIFAEVLKGRGVYDKKKLMGVTTLDVCRAQTFVAENLGQSVNDTAVDVIGGHAGTTILPLLSQVEGAKFSDKDLEALTHRIQFGGDEVVKAKDGAGSATLSMAHAGAYFAIRVLAAMEGEADIRECTFVENDLTAAPYFATPVILGKDGVEKVLGFGKLSAFEQKILDENVPALQAQAKKGVDFV 344
[Close]
BLAST of mRNA_H-elongata_contig8279.15917.1 vs. uniprot
Match: A0A6V1QQG6_HETAK (Malate dehydrogenase n=2 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1QQG6_HETAK)

HSP 1 Score: 425 bits (1092), Expect = 2.610e-143
Identity = 218/326 (66.87%), Postives = 259/326 (79.45%), Query Frame = 3 
Query:  135 KAVGVCSVRSFGGTARCLNKVTVVGAAGGIGQPMSLLMKLSGKIDHLSLFDIVNSPGVAADVAHCNTKGKVVGYKGAEEMASALDGSDIVVIPAGVPRKPGMTRDDLFNTNASIVKGIAEQCAKSCPKACYLIISNPVNSTVPIFADVLKAAGVYDPAKLMGVTTLDVVRAKTFVAENQGMDVDAVEVDVIGGHAGTTIMPLLSQVKGAKFTEEDIKALTHRIQFGGDEVVKAKDGAGSATLSMAHAGAYFAEKVLDGLNGVKGIRECTFVESALTEAPFFASPCTLGTEGVSEVHTYGQLTPFEQALVDENVPALIKMAQKGSDF 1112
            KAV   + R+F  +AR L KVTVVGAAGGIGQPMSLL+K + K+  LSLFD+VN+PGVAAD+ H        GY GAE+M  AL GSDIVVIPAGVPRKPGMTRDDLF TNA+IV GIAE CA++CP A + IISNPVNSTVPIFA+ LK  GVY+  KL GVTTLD+ RAKTF+ +NQG+D   V+VDVIGGHAG TIMPLLSQV+G  FT++DI+ LTHRIQFGGDEVVKAKDGAGSATLSMA+AGA F   +L+ L+G + +RECTFVES LT+APFF+SP T+   GV E+H +G L+ FEQA+ DEN+P L+K A+KG  F
Sbjct:    2 KAVQGIAKRAFNSSARNLAKVTVVGAAGGIGQPMSLLLKTNPKVTELSLFDVVNTPGVAADIGHVCQPSVTKGYVGAEQMGEALQGSDIVVIPAGVPRKPGMTRDDLFATNANIVYGIAESCAQNCPDAMFAIISNPVNSTVPIFAEALKKYGVYNSKKLFGVTTLDITRAKTFIGQNQGLDPRDVKVDVIGGHAGKTIMPLLSQVQGVSFTDKDIEELTHRIQFGGDEVVKAKDGAGSATLSMAYAGASFTGSLLNALSGTE-VRECTFVESPLTDAPFFSSPVTIDANGVKEIHNFGTLSAFEQAVFDENLPTLVKQAEKGVAF 326
[Close]
BLAST of mRNA_H-elongata_contig8279.15917.1 vs. uniprot
Match: F0YJC9_AURAN (Malate dehydrogenase n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YJC9_AURAN)

HSP 1 Score: 421 bits (1082), Expect = 6.200e-142
Identity = 214/319 (67.08%), Postives = 255/319 (79.94%), Query Frame = 3 
Query:  159 RSFGGTARCLNKVTVVGAAGGIGQPMSLLMKLSGKIDHLSLFDIVNSPGVAADVAHCNTKGKVVGYKGAEEMASALDGSDIVVIPAGVPRKPGMTRDDLFNTNASIVKGIAEQCAKSCPKACYLIISNPVNSTVPIFADVLKAAGVYDPAKLMGVTTLDVVRAKTFVAENQGMDVDAVEVDVIGGHAGTTIMPLLSQVKGAKFTEEDIKALTHRIQFGGDEVVKAKDGAGSATLSMAHAGAYFAEKVLDGLNGVKGIRECTFVESALTEAPFFASPCTLGTEGVSEVHTYGQLTPFEQALVDENVPALIKMAQKGSDFV 1115
            R+ G  AR  + V V+GAAGGIGQPMSLL+K S  ++ LSL+D+VN+PGVAAD++HC+T   V    G    A AL+G D+VVIPAGVPRKPGMTRDDLFNTNASIV+ +AE CA +CP AC+LII+NPVNSTVPIFA+ LK  GVYD  KL GVTTLDVVRAKTFVAENQG DV   +VDVIGGHAGTTI+PLLSQ++GA F+++DI  LTHRI FGGDEVV+AKDGAGSATLSMA+AGA+F  KVL+ LNG  GI EC FVES +T+AP+F+SP TLG  GV  +H YG L+PFEQ ++D+ VP LI  A+KG  FV
Sbjct:    9 RTVGTHARYASNVAVLGAAGGIGQPMSLLIKQSPLVNELSLYDVVNTPGVAADLSHCSTPATVRSTVGMGNAAEALEGMDVVVIPAGVPRKPGMTRDDLFNTNASIVQSLAEACATTCPNACFLIIANPVNSTVPIFAETLKKHGVYDKNKLFGVTTLDVVRAKTFVAENQGGDVLNTDVDVIGGHAGTTILPLLSQIEGASFSQDDIDKLTHRIMFGGDEVVQAKDGAGSATLSMAYAGAHFTFKVLEALNGATGITECAFVESDVTDAPYFSSPVTLGKNGVETIHGYGTLSPFEQDVLDKAVPDLIAQAEKGVKFV 327
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig8279.15917.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A097IUQ0_9PHAE2.750e-21788.54Malate dehydrogenase n=8 Tax=Sargassum TaxID=3015 ... [more]
D8LQM3_ECTSI6.210e-20283.09Malate dehydrogenase n=7 Tax=Eukaryota TaxID=2759 ... [more]
A0A097IUP2_9PHAE8.630e-20082.29Malate dehydrogenase n=1 Tax=Dictyopteris undulata... [more]
A0A097IUN2_SACJA3.370e-19982.23Malate dehydrogenase n=3 Tax=Laminariales TaxID=28... [more]
A0A097IUM5_9PHAE2.600e-19680.52Malate dehydrogenase n=1 Tax=Desmarestia viridis T... [more]
A0A097IUM6_9PHAE5.710e-19380.23Malate dehydrogenase n=1 Tax=Punctaria latifolia T... [more]
A0A097IUI7_9PHAE9.280e-18878.67Malate dehydrogenase n=1 Tax=Ishige okamurae TaxID... [more]
A0A835YGB7_9STRA1.580e-16069.82Malate dehydrogenase n=1 Tax=Tribonema minus TaxID... [more]
A0A6V1QQG6_HETAK2.610e-14366.87Malate dehydrogenase n=2 Tax=Heterosigma akashiwo ... [more]
F0YJC9_AURAN6.200e-14267.08Malate dehydrogenase n=1 Tax=Aureococcus anophagef... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig8279contigH-elongata_contig8279:2..5982 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score575.9
Seed ortholog evalue1.3e-161
Seed eggNOG ortholog2880.D8LQM3
Preferred nameMDH2
KEGG rclassRC00031
KEGG koko:K00026,ko:K03283
KEGG TC1.A.33.1
KEGG ReactionR00342,R07136
KEGG Pathwayko00020,ko00270,ko00620,ko00630,ko00710,ko01100,ko01110,ko01120,ko01130,ko01200,ko03040,ko04010,ko04141,ko04144,ko04213,ko04612,ko04915,ko05134,ko05145,ko05162,ko05164,ko05169,map00020,map00270,map00620,map00630,map00710,map01100,map01110,map01120,map01130,map01200,map03040,map04010,map04141,map04144,map04213,map04612,map04915,map05134,map05145,map05162,map05164,map05169
KEGG ModuleM00009,M00011,M00012,M00168,M00171,M00353,M00355
GOsGO:0002165,GO:0003674,GO:0003824,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005759,GO:0005975,GO:0005996,GO:0006006,GO:0006082,GO:0006091,GO:0006094,GO:0006099,GO:0006101,GO:0006107,GO:0006108,GO:0006139,GO:0006464,GO:0006473,GO:0006475,GO:0006725,GO:0006732,GO:0006733,GO:0006734,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0006919,GO:0007275,GO:0007431,GO:0007435,GO:0007552,GO:0008150,GO:0008152,GO:0008219,GO:0009058,GO:0009060,GO:0009117,GO:0009653,GO:0009791,GO:0009886,GO:0009887,GO:0009893,GO:0009987,GO:0010604,GO:0010623,GO:0010941,GO:0010942,GO:0010950,GO:0010952,GO:0012501,GO:0015980,GO:0016020,GO:0016051,GO:0016491,GO:0016614,GO:0016615,GO:0016616,GO:0016999,GO:0017144,GO:0019222,GO:0019318,GO:0019319,GO:0019362,GO:0019538,GO:0019637,GO:0019674,GO:0019752,GO:0022612,GO:0030060,GO:0030154,GO:0030162,GO:0031323,GO:0031325,GO:0031974,GO:0032268,GO:0032270,GO:0032501,GO:0032502,GO:0034641,GO:0035069,GO:0035070,GO:0035071,GO:0035096,GO:0035209,GO:0035272,GO:0036211,GO:0042802,GO:0042803,GO:0042981,GO:0043065,GO:0043067,GO:0043068,GO:0043085,GO:0043170,GO:0043209,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043280,GO:0043281,GO:0043412,GO:0043436,GO:0043543,GO:0043621,GO:0043648,GO:0044093,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044281,GO:0044283,GO:0044422,GO:0044424,GO:0044429,GO:0044444,GO:0044446,GO:0044464,GO:0045333,GO:0045862,GO:0046364,GO:0046483,GO:0046496,GO:0046554,GO:0046983,GO:0048102,GO:0048468,GO:0048513,GO:0048518,GO:0048522,GO:0048707,GO:0048731,GO:0048732,GO:0048856,GO:0048869,GO:0050789,GO:0050790,GO:0050794,GO:0051087,GO:0051171,GO:0051173,GO:0051186,GO:0051246,GO:0051247,GO:0051336,GO:0051345,GO:0052547,GO:0052548,GO:0055086,GO:0055114,GO:0060033,GO:0060255,GO:0065007,GO:0065009,GO:0070013,GO:0071704,GO:0072350,GO:0072524,GO:0080090,GO:1901360,GO:1901564,GO:1901576,GO:2000116,GO:2001056
EggNOG free text desc.L-malate dehydrogenase activity
EggNOG OGsCOG0039@1,KOG1494@2759
EC1.1.1.37
COG Functional cat.C
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko01009,ko03009,ko03029,ko03041,ko03051,ko03110,ko04131,ko04147,ko04516
Hectar predicted targeting categorymitochondrion
Ec32 ortholog descriptionmalate dehydrogenase
Ec32 orthologEc-10_006200.1
Exons9
Model size1581
Cds size1050
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931233.958345-UTR-H-elongata_contig8279:1..4551622931233.958345-UTR-H-elongata_contig8279:1..455Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig8279 2..455 -
1691679753.0034833-UTR-H-elongata_contig8279:1..4551691679753.0034833-UTR-H-elongata_contig8279:1..455Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig8279 2..455 -
1622931234.1748362-UTR-H-elongata_contig8279:5905..59821622931234.1748362-UTR-H-elongata_contig8279:5905..5982Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig8279 5906..5982 -
1691679753.1384332-UTR-H-elongata_contig8279:5905..59821691679753.1384332-UTR-H-elongata_contig8279:5905..5982Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig8279 5906..5982 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931233.9943066-CDS-H-elongata_contig8279:455..5961622931233.9943066-CDS-H-elongata_contig8279:455..596Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig8279 456..596 -
1691679753.01857-CDS-H-elongata_contig8279:455..5961691679753.01857-CDS-H-elongata_contig8279:455..596Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig8279 456..596 -
1622931234.0140405-CDS-H-elongata_contig8279:2119..22391622931234.0140405-CDS-H-elongata_contig8279:2119..2239Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig8279 2120..2239 -
1691679753.0292773-CDS-H-elongata_contig8279:2119..22391691679753.0292773-CDS-H-elongata_contig8279:2119..2239Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig8279 2120..2239 -
1622931234.0345728-CDS-H-elongata_contig8279:2477..25941622931234.0345728-CDS-H-elongata_contig8279:2477..2594Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig8279 2478..2594 -
1691679753.0462582-CDS-H-elongata_contig8279:2477..25941691679753.0462582-CDS-H-elongata_contig8279:2477..2594Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig8279 2478..2594 -
1622931234.0804467-CDS-H-elongata_contig8279:2820..28971622931234.0804467-CDS-H-elongata_contig8279:2820..2897Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig8279 2821..2897 -
1691679753.0683775-CDS-H-elongata_contig8279:2820..28971691679753.0683775-CDS-H-elongata_contig8279:2820..2897Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig8279 2821..2897 -
1622931234.0977743-CDS-H-elongata_contig8279:3201..32891622931234.0977743-CDS-H-elongata_contig8279:3201..3289Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig8279 3202..3289 -
1691679753.080555-CDS-H-elongata_contig8279:3201..32891691679753.080555-CDS-H-elongata_contig8279:3201..3289Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig8279 3202..3289 -
1622931234.112506-CDS-H-elongata_contig8279:3623..37621622931234.112506-CDS-H-elongata_contig8279:3623..3762Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig8279 3624..3762 -
1691679753.0997183-CDS-H-elongata_contig8279:3623..37621691679753.0997183-CDS-H-elongata_contig8279:3623..3762Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig8279 3624..3762 -
1622931234.1282656-CDS-H-elongata_contig8279:4201..43021622931234.1282656-CDS-H-elongata_contig8279:4201..4302Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig8279 4202..4302 -
1691679753.1107266-CDS-H-elongata_contig8279:4201..43021691679753.1107266-CDS-H-elongata_contig8279:4201..4302Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig8279 4202..4302 -
1622931234.1446536-CDS-H-elongata_contig8279:5296..54461622931234.1446536-CDS-H-elongata_contig8279:5296..5446Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig8279 5297..5446 -
1691679753.1213741-CDS-H-elongata_contig8279:5296..54461691679753.1213741-CDS-H-elongata_contig8279:5296..5446Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig8279 5297..5446 -
1622931234.1618423-CDS-H-elongata_contig8279:5788..59051622931234.1618423-CDS-H-elongata_contig8279:5788..5905Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig8279 5789..5905 -
1691679753.1301486-CDS-H-elongata_contig8279:5788..59051691679753.1301486-CDS-H-elongata_contig8279:5788..5905Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig8279 5789..5905 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig8279.15917.1prot_H-elongata_contig8279.15917.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig8279 456..5905 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig8279.15917.1

>prot_H-elongata_contig8279.15917.1 ID=prot_H-elongata_contig8279.15917.1|Name=mRNA_H-elongata_contig8279.15917.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=350bp
MSAVTRFYPVVKSAAPMASKAVGVCSVRSFGGTARCLNKVTVVGAAGGIG
QPMSLLMKLSGKIDHLSLFDIVNSPGVAADVAHCNTKGKVVGYKGAEEMA
SALDGSDIVVIPAGVPRKPGMTRDDLFNTNASIVKGIAEQCAKSCPKACY
LIISNPVNSTVPIFADVLKAAGVYDPAKLMGVTTLDVVRAKTFVAENQGM
DVDAVEVDVIGGHAGTTIMPLLSQVKGAKFTEEDIKALTHRIQFGGDEVV
KAKDGAGSATLSMAHAGAYFAEKVLDGLNGVKGIRECTFVESALTEAPFF
ASPCTLGTEGVSEVHTYGQLTPFEQALVDENVPALIKMAQKGSDFVKNH*
back to top

mRNA from alignment at H-elongata_contig8279:2..5982-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig8279.15917.1 ID=mRNA_H-elongata_contig8279.15917.1|Name=mRNA_H-elongata_contig8279.15917.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=5981bp|location=Sequence derived from alignment at H-elongata_contig8279:2..5982- (Himanthalia elongata Himel1 dioecious)
TCAACTACTTCGCCCGTAGCCCAGGAACACTGCTAAGACCTCTTCTCGTC
CTCATCTACTATTTGTTGCTCAGTGTCATGTCTGCCGTCACGCGCTTCTA
TCCAGTGGTGAAATCAGCAGCACCCATGGCATCGAAGGCCGTCGGGGTGT
GTTCGGTTCGATCATTCGGCGGCACCGCTCGTTGTCTGAACAAGGTGCGC
AAGGTTCCGCTGATGCTTCCGATTGACTTCGCATGACACACGGGATGTTA
AAATGACCTACGCTGGTGGTTTTACACGAAGAATTAGACACCGATCCCTA
CGCTCCAAGCGTTCGTTGCTGCAACCAATCCATATCGGGGTTTCGCCATC
CATGTTGTAGATGATACAGGAAGTTCAAATTACGGCTATCGAGAGCTAGG
AGACAATGCGTGCTGACACGCACTGGCTGTTTCCGAGAGTTACCAGCTGT
TTTGCGGTCCCGCTGAACCGAGCTTTCCCCGAACTTCTACGAAGCCCCAA
TAAAACCTCTTCTTTGCTGTTCGTGGCGCGATGCAGGTGACCGTCGTTGG
GGCTGCGGGTGGAATAGGGCAGCCCATGTCGCTGCTGATGAAGCTGTCGG
GGAAGATCGATCACCTCTCGCTGTTCGACATTGTCAACAGCCCCGGCGTC
GCTGCAGATGTCGCCCACTGCAACACCAAGGGAAAGGTTCGCCGCCCCCC
ACAAACCTTGCCCTACTTGCTCTTATGTTTTGCGTCAATTAGACCCTACG
TCTTCTCTAGACCTATTGTGGCCATTTACTAGCCATTATTGAAAGTGGCT
CTTGGTGGTGTCGGACGTCAAGCGAATAAAGGAACGGACCGACCGCCTAT
ATTCGTACCTGTCTTGTTCACTTTCCAAATTATTCTTTTAATAGTATCTT
TGTGTTATGTGTGTGCGCGTTTTTTTGTCCCTGTTTTGTGTATGTTTGTG
TCCAATTTCTAAAAAATATATGAACTTCATGAAACCCTAGGAATATCTAC
ACCTGCATTGTTGGTCGCACTACACCAGCACGAGTGGTAATAGTAATAAT
AATAATGTGAAGGGGACCAACTATCTTCAGGTTCGAGTGTGTATTGTCCA
AGCTTTTCTTTTTTAAACACTCCTAGGTAGCCACACACACAAAAAAGTGC
AAAAACACGTTAAATATTCGTTCATTTTCAACATGTGAGTAGAGATAACT
ATAGTGAAAACTCGAAAAAGATGAAACGATACGCGGCGCATCCAGGCTCG
AGAGTCAGTGCTACGCTGAACCCTCTCTCTCCCTCTCGGGGTATGGACTC
GCTGTGGATTCTGGGGTGCGGACTTCTTCGTTGGTGTATATATGTGATGA
TGCACACATACATGTGCCTTACAGGCCTTCTGTCGGCCCTAAAATTGATG
ACACAGCTCTTCTCAACATGAAGCTTTCATGGCAACCGTGTGTAAGCTCA
AAGCGCGCTCGTGACCCTGATATTTATCCTTTTACGAGAATGGTTTTGTG
ACTACGAGTAGCTCTCCCCGACACGCAAACGCCGCCTTTCCGTGGAAAAC
CGATGTTCAGTATTGCAGCGCCGGTAAGGGGGGGAGAATATCGATGGGGT
AATATATGCAACGGAGTCCTTTGAGAAAGCAAGAGACGGTGGCAACGTTT
CAAAAAATCAATCAAACCGTTCAACAACAGGTTGTGGGTTACAAGGGCGC
CGAGGAAATGGCATCGGCGTTGGACGGGAGCGATATCGTCGTGATTCCCG
CGGGTGTACCCCGCAAGCCGGGTATGACCCGGTGAGCCCAAGAGAGCGAC
GGAGGGGGGAGTAACATAATTCCAAAAGCGGGTGTTTGGTAAGCCGTATA
TCTGGGATCCTTTTATGTTTTGTCCGTATGTGTCTGAATGCGGTTGGCCA
TAGAGAGAAAAGAGGGTATGCTGAGTAAAAGATACATGTTTTCGGCTCGC
CTCCTCGATAATTAGCCGTCTTCAGTCCCTTCTCACCACTTCAGCCCTTT
GAAATTGTCAGTCGGGATGTCTGTGTGGACCTCATGTACCTACCCGCCCA
TCCATGATCAAAATGTTCACGCGGAGTCGGAGTAATGACTCGAAAAAGGT
GACGGGTTTCTTTTGCCCGCATTTGGCGTTCCGTGCTGTTCTATCACAAA
AAAATAAAAAATAAAATGACAGCCCCACGTACAAAAATAAGTTCCAACTC
GCACGTTCTGGCCTGAATAGGGATGATTTGTTCAACACCAACGCCTCCAT
CGTGAAGGGCATCGCCGAGCAGTGCGCCAAGAGCTGCCCCAAGGCCTGCT
ACCTCATCATTTCCAACCCCGTCAACTCCACGGTGCCCATCTTCGCCGAC
GTCCTCAAGGTGTTACCATGCATGACGATCACGGTGCTACGGTGCCCGAA
CGTGTTAGCCTCGCCACCATAGTACATAAATTGTACAGCATACCTTTTGG
AGCTTGAAAGCTACCGTATGTTTGGGGTGAATGCACGTAATTCGCATAAT
ATGAAGATGAATGCACGGAAGTCCTGAATGTGAGCCCCGATTAATTTTCG
TCTACCAGAGTAGGATACGTGAGGGCTTGTCACCCGAGCGCTCGCCTTTT
TGGACTCCTTGTTCCTACTGCTACCCTACATACTTTGATTTTGATCCCAG
CCGTTGTTCTCACAATTTCATGTTCGTCGTGTGTGCGCGCCAGGCCGCCG
GTGTCTATGACCCGGCAAAGCTCATGGGAGTCACCACCCTTGACGTCGTC
CGCGCCAAGACTTTCGTTGCAGAAAACCAGGGTGCGTCTGCGCGATCCTG
TTGCGTGCATCGTCGTTAGCCTCCCCTGACAAAACGCCGCGTTGTTTTGA
GACCTTGGCGAGCCGCGAAACCTGCTCATGATGTTTGAGTTTATTTTTCT
GGAATAAAACGGAAATGTGTCTGTGATGACCTTGCCCCAATGCCGCCTCC
ATTGATTGCTCCATTTTGCAAAGTATACCGCCCGACCAAGCACACGCCGT
TATCCTTGCATATATTTTGATGTAGCGGGCTGACTCGCGTGCTTCTCGCG
TTCGTGAAACTTCTCATCGGTGATGCGACGGACAGGCATGGACGTGGACG
CGGTCGAGGTTGATGTCATCGGGGGCCACGCGGGGACGACCATCATGCCC
CTTCTGTCGCAGGTACCGCGCCGTTTCCGGAGCACCAGTCCTTATCATGC
CCCCCATGTAGAGTCCCTCCTTTCCCTCGAGGACTTTGTTTCATTCGAAA
TGTCTGGAGGGGCCGCGGGCATGGCCAGATGTCGAGCTAGCTTGGTCAAG
AGAGGCGTTCTCCAAGAGACAGCCTTCGCCGCCGCCCTAGCCCGTAATCA
TTTCCAGCGCGCTTGGCTCGCTCGAATGGCGTGCACAGGTGAAGGGGGCT
AAATTTACGGAGGAGGACATCAAAGCCCTGACTCACCGAATCCAGTTCGG
AGGCGACGAAGTTGTCAAGGCGAAGGACGGGGCCGGATCAGCCACTCTTT
CGATGGTAAGGAAAGTCGCAGAGTCTGGCGGGGATTTAAAATACATCTAA
GCAGTAACGTACCTTTTATCCGCGTGGTAGGAACGATGGCCTGGAAGGCG
TTTTTCACTAAAATAGTTTTTATTTCTAGGTTCTTGGCACGATCGCCTCT
ACGCGCATATTAAGAATCGACTGCACTTTTACCCTCACAGCAGCCGCACT
AGCTCAGTGTCCTAAACCCGTCGCTGCCCCTCCGGTGGCCCAGGCTCACG
CGGGCGCGTACTTCGCCGAGAAGGTGCTAGACGGGCTTAACGGGGTGAAA
GGCATCAGGGAGTGCACGTTCGTGGAGAGCGCCCTCACGGAGGCGCCGTT
CTTCGCCTCCCCGGTGAGTGTTGTAGCTTGCCGATAGGCGTGTCGGATGA
CGGGGAAAGTCGGAGGCGTTCATGGAAGGGTGGTACTTGGAGCGGTGACT
GAAGAGTGCGCTTGCAGAGATTCGTCCCCTAGTTCTGCGAAACTTTCGTG
TGCGGAGAGCTGCATGCAAATACTTGGCATATCGAACGACGCATTGCACA
GGCTACCTGGGGGGGGGGTGTCCTGGAGAAGTTTTTCCTCGTGAGAAATT
ATGACGACGGCGACCACGTTATAGATAACTTGTGCCGATGTAGCTGAATG
GGCTATAATGAGCGTACCCTAGGAGACACGCTAAATTGGGGATGACGATT
TTTGTGTAATTTTCGTGAGTATCCTCCCCCCCACTCCCGCCTTCCTCTTC
CTCTTCCTCCGCTGTGTAAATACAGTAAAAATAGTCACCGCGGTTATTTA
AGATGATAGTTTTCCCGAGCATGTAGTCATGCCCGAAAAAACATGGGGAT
TTGCTGCCCCTAAGGGTACGTCTTAACGAAGAAAAAAAATGAGTTTGACT
ATTGAGTTTGATTGTGATTCTTACCGTTTGAACTTATTATTATTATTACT
ATTCCTCTAATTGGTGAAGGTATTTGAAACTTTTAGATGCAGAATCAATT
CCTCGAATTCAAGCTCAAAAAAATTATAATTCAAAAATGTTTTTTTTTTT
TAGCATCTGGCGAACGGGCACTTGATTTTGCAAATCGGAACAACGATGGG
CTGTTCGGCACCTGGCTATTACATGCCACTGGCACACGAGGCACAAATTC
ATAACAGAAAGAGAGGTATTTGGGGGAGGTATTGGAGGATGTGGGCAGCT
TGCTTCGCTAGCGGAGGGTGCCGCAGCGAGTCTACGAGGCCATGTGATGA
CGTACCAACGTTCGCCTGCAACAATCCCTGCACTGCAGATTCATGGGTCT
GCCTTCGCAGGGTCGCAGCCGACCCCATCCCCAGTGGTTTAGTTACTGCT
CCTGTGCCGTCCTAGGAATATTAATTAATGTTACGATATTGCCGAGAGCT
TTTTCATTCATTGTTTTGAAAGTTAGTGAGTGCCGTTCACATGACCCCGG
AGGAAGCAGTAGTCTCTGTTAGTACTGCAATTGGGTTTTTGTGTGAAAGA
CCACTGTCAGGCAGCTATAGAGCAAGAACGTGTTGGTCTGTTCAAGAAAA
TTAACCAAAATCAAAATCAATTTCCCCCTGTTTTGTTCCGTCGATGGGAA
TGGCGAGTGATTGATTATTGATTTTGAGTATTCGAACCGTCACAATCAAA
ATCAATTATCAATAATCATATTTGTTTTCGCTCAGACGTACCCTAAGTCG
TGTCTGTATGTGTGTTTTGTGTTTTTTACAAGTCGTACCTTTGAACGTCA
TCTCCCACCTCCCCATTCCACTTTTACCTTACGTCGAGTTTCAATGTCGC
TTCGTTCCCATGAACTGCGATTCGCGCTATACGCCAACCCCCCCTCCCTC
ACCCGTCCCCTCTCCCTTGAAACGTGTCACACGCAGTGCACGTTGGGTAC
CGAGGGCGTTAGCGAGGTCCACACCTATGGCCAGCTCACTCCGTTCGAGC
AGGCCTTGGTAGACGAGAATGTTCCCGCGCTGATCAAGATGGCCCAAAAA
GGATCCGACTTCGTCAAGAACCACTAAATAGATCTGCGACGAACATTCAC
ACATTCATAATCCCATCATTTGCCTTAGTGGCCATAACATATGCTCGCGG
TGGCTGTGCTTCTCCTTTGATTTTTTTGTGCGTACAGTAGATTTGTGAAG
AGTGGTTTTGGTTTTGGGGGTTTAGATTTAGTCGTCGGCTAAATTGGTGT
TGTTTCGGAGCAAACGTCGGCCTATTAACGGTAAGAGAGGGTGAAAAGCT
GAGACTTGCCCTGTGCTGTCGTGGCCTGAATCCATATCAATAAATACCAG
CTGAACCCCGCTATAGAGGACTACCCAGTGCGATCCATAATGCTGAACTC
CCGAGTGATGAAATATGTATATTACACTTTAAATATCGAACGACGTACTG
ATTGATAATTTTTATTTAAAATACTTTAGGCTCATTCTGACTCTCCGTAC
ATCCACACCTTCTTGTCACCGTGAGTGCAAT
back to top

Coding sequence (CDS) from alignment at H-elongata_contig8279:2..5982-

>mRNA_H-elongata_contig8279.15917.1 ID=mRNA_H-elongata_contig8279.15917.1|Name=mRNA_H-elongata_contig8279.15917.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=2100bp|location=Sequence derived from alignment at H-elongata_contig8279:2..5982- (Himanthalia elongata Himel1 dioecious)
ATGTCTGCCGTCACGCGCTTCTATCCAGTGGTGAAATCAGCAGCACCCAT
GGCATCGAAGGCCGTCGGGGTGTGTTCGGTTCGATCATTCGGCGGCACCG
CTCGTTGTCTGAACAAGATGTCTGCCGTCACGCGCTTCTATCCAGTGGTG
AAATCAGCAGCACCCATGGCATCGAAGGCCGTCGGGGTGTGTTCGGTTCG
ATCATTCGGCGGCACCGCTCGTTGTCTGAACAAGGTGACCGTCGTTGGGG
CTGCGGGTGGAATAGGGCAGCCCATGTCGCTGCTGATGAAGCTGTCGGGG
AAGATCGATCACCTCTCGCTGTTCGACATTGTCAACAGCCCCGGCGTCGC
TGCAGATGTCGCCCACTGCAACACCAAGGGAAAGGTGACCGTCGTTGGGG
CTGCGGGTGGAATAGGGCAGCCCATGTCGCTGCTGATGAAGCTGTCGGGG
AAGATCGATCACCTCTCGCTGTTCGACATTGTCAACAGCCCCGGCGTCGC
TGCAGATGTCGCCCACTGCAACACCAAGGGAAAGGTTGTGGGTTACAAGG
GCGCCGAGGAAATGGCATCGGCGTTGGACGGGAGCGATATCGTCGTGATT
CCCGCGGGTGTACCCCGCAAGCCGGGTATGACCCGGTTGTGGGTTACAAG
GGCGCCGAGGAAATGGCATCGGCGTTGGACGGGAGCGATATCGTCGTGAT
TCCCGCGGGTGTACCCCGCAAGCCGGGTATGACCCGGGATGATTTGTTCA
ACACCAACGCCTCCATCGTGAAGGGCATCGCCGAGCAGTGCGCCAAGAGC
TGCCCCAAGGCCTGCTACCTCATCATTTCCAACCCCGTCAACTCCACGGT
GCCCATCTTCGCCGACGTCCTCAAGGGATGATTTGTTCAACACCAACGCC
TCCATCGTGAAGGGCATCGCCGAGCAGTGCGCCAAGAGCTGCCCCAAGGC
CTGCTACCTCATCATTTCCAACCCCGTCAACTCCACGGTGCCCATCTTCG
CCGACGTCCTCAAGGCCGCCGGTGTCTATGACCCGGCAAAGCTCATGGGA
GTCACCACCCTTGACGTCGTCCGCGCCAAGACTTTCGTTGCAGAAAACCA
GGGCCGCCGGTGTCTATGACCCGGCAAAGCTCATGGGAGTCACCACCCTT
GACGTCGTCCGCGCCAAGACTTTCGTTGCAGAAAACCAGGGCATGGACGT
GGACGCGGTCGAGGTTGATGTCATCGGGGGCCACGCGGGGACGACCATCA
TGCCCCTTCTGTCGCAGGCATGGACGTGGACGCGGTCGAGGTTGATGTCA
TCGGGGGCCACGCGGGGACGACCATCATGCCCCTTCTGTCGCAGGTGAAG
GGGGCTAAATTTACGGAGGAGGACATCAAAGCCCTGACTCACCGAATCCA
GTTCGGAGGCGACGAAGTTGTCAAGGCGAAGGACGGGGCCGGATCAGCCA
CTCTTTCGATGGTGAAGGGGGCTAAATTTACGGAGGAGGACATCAAAGCC
CTGACTCACCGAATCCAGTTCGGAGGCGACGAAGTTGTCAAGGCGAAGGA
CGGGGCCGGATCAGCCACTCTTTCGATGGCTCACGCGGGCGCGTACTTCG
CCGAGAAGGTGCTAGACGGGCTTAACGGGGTGAAAGGCATCAGGGAGTGC
ACGTTCGTGGAGAGCGCCCTCACGGAGGCGCCGTTCTTCGCCTCCCCGGC
TCACGCGGGCGCGTACTTCGCCGAGAAGGTGCTAGACGGGCTTAACGGGG
TGAAAGGCATCAGGGAGTGCACGTTCGTGGAGAGCGCCCTCACGGAGGCG
CCGTTCTTCGCCTCCCCGTGCACGTTGGGTACCGAGGGCGTTAGCGAGGT
CCACACCTATGGCCAGCTCACTCCGTTCGAGCAGGCCTTGGTAGACGAGA
ATGTTCCCGCGCTGATCAAGATGGCCCAAAAAGGATCCGACTTCGTCAAG
AACCACTAATGCACGTTGGGTACCGAGGGCGTTAGCGAGGTCCACACCTA
TGGCCAGCTCACTCCGTTCGAGCAGGCCTTGGTAGACGAGAATGTTCCCG
CGCTGATCAAGATGGCCCAAAAAGGATCCGACTTCGTCAAGAACCACTAA
back to top