mRNA_H-elongata_contig82699.15914.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig82699.15914.1
Unique NamemRNA_H-elongata_contig82699.15914.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig82699.15914.1 vs. uniprot
Match: A0A6P0N5L4_9CYAN (Patatin-like protein n=1 Tax=Moorena sp. SIO3C2 TaxID=2607842 RepID=A0A6P0N5L4_9CYAN)

HSP 1 Score: 301 bits (770), Expect = 7.150e-89
Identity = 153/328 (46.65%), Postives = 217/328 (66.16%), Query Frame = 1
Query:    1 ANLSALGQKARPVAYGDVLQRVIGAVFCRRYGKKLADYFQPWGQYGVAVSGGVEIMALTVTLGFEYDCAILSYDGQNAFNSIYRHRFLPALAEIVPSMVSYASNLYAREPQKLLFALDGGGLEVVESARGVQQGCYLGPLCYSADSLKILKEFRANPPVPRARAVSFIDDITVILPPKLSIDMAAIGKFTEWLQKRLGVEGISLNRRKSQALLAYGVWPEQLTEEQRVAMDTTGLTVVRQGMRVVGVPVGTEQFQRDFVQKAVNGEPAELVRALIPMEDAQASFQSLCLSATSRFSYLLRTVPPSIICQAAANYDALVEWALAFIIAG 984
            ANLSA+G K RP+A GD+ +R++G V CR+YG  LA++F+P GQYGVAV GG E++A    L  +    +L+YD +NAFNS+ R   LPALA+++P M+ YA+N+YAREP KLL+  D G + V+ SA GVQQGC LGPLCYSA  LK+L++FRANPPV  A+ ++FIDD+ V+LP   + + AA    T W+Q  +   G++LNR KS+ L   G   +   E+ R  ++ T L V   GMR+VGVPVG   + +        GEP +L++ +  ++DAQAS Q L  SA +R ++LLR++PP +  +AA+ +D  VE  L  I+ G
Sbjct: 1222 ANLSAIGDKCRPIAVGDLFRRIVGGVICRQYGPSLAEHFEPQGQYGVAVPGGTELLAARAFLAHQKGQCLLAYDARNAFNSMKRSAILPALADLIPPMLPYATNIYAREPPKLLYKTDSG-MAVIPSATGVQQGCNLGPLCYSAGLLKLLRDFRANPPVVGAQLMAFIDDLVVLLPKNHACNPAAAEAVTTWIQANMQPLGVALNRSKSKILFPPGTDVKSWPEKDRETLERTQLAVAEGGMRIVGVPVGEPDYIKRSALDIARGEPTDLLKEIASLDDAQASLQILRFSAATRLNFLLRSLPPDLTKEAASEFDKSVEQTLETILNG 1548          
BLAST of mRNA_H-elongata_contig82699.15914.1 vs. uniprot
Match: A0A6H5KGJ4_9PHAE (Reverse transcriptase domain-containing protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KGJ4_9PHAE)

HSP 1 Score: 285 bits (729), Expect = 5.580e-88
Identity = 153/328 (46.65%), Postives = 207/328 (63.11%), Query Frame = 1
Query:    1 ANLSALGQKARPVAYGDVLQRVIGAVFCRRYGKKLADYFQPWGQYGVAVSGGVEIMALTVTLGFEYDCAILSYDGQNAFNSIYRHRFLPALAEIVPSMVSYASNLYAREPQKLLFALDGGGLEVVESARGVQQGCYLGPLCYSADSLKILKEFRANPPVPRARAVSFIDDITVILPPKLSIDMAAIGKFTEWLQKRLGVEGISLNRRKSQALLAYGVWPEQLTEEQRVAMDTTGLTVVRQGMRVVGVPVGTEQFQRDFVQKAVNGEPAELVRALIPMEDAQASFQSLCLSATSRFSYLLRTVPPSIICQAAANYDALVEWALAFIIAG 984
            ANLSALG+K RP+A G VL+R+I   FC +Y   +A+ F+   Q+G  V GGVEI+A T  L  +    ILS+DG+NA+NS+ R   LPA+A   P +V Y  N+YAR   KLLF ++ G +EVV S RGVQQGC LG   +    L I+KEF   PPVP A+ + ++DD+ V LPP L+ ++ AI   T W+Q  L  +GI L+  KS+ L   G++   LT +++  +  TGL+V   GM +VGVPVGTE FQR FV     G PAEL+R L  ++D QAS+Q L LS   R  +LLRT+ PSI   AA  +D L+ WA++ I+ G
Sbjct:  186 ANLSALGEKKRPIAVGGVLRRIISGSFCHQYKGGIANIFEAANQFGGGVPGGVEIVASTAALSHQQGSTILSFDGKNAYNSMRRSSILPAVATHTPHLVKYFGNIYARTKAKLLFKMEDGSIEVVLSQRGVQQGCNLGGFGFCVGLLDIMKEFNNKPPVPGAKLIGYVDDLQVHLPPGLARNIQAIATVTNWIQDHLLQKGIELSLPKSKVLFPEGLFFSSLTNDEQRDLTKTGLSVAEGGMAIVGVPVGTECFQRSFVTNFARGNPAELIRRLSTLDDPQASYQLLRLSGVPRLFHLLRTIAPSITNTAAREHDNLMIWAVSKIVLG 513          
BLAST of mRNA_H-elongata_contig82699.15914.1 vs. uniprot
Match: A0A6H5JCM0_9PHAE (Reverse transcriptase domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JCM0_9PHAE)

HSP 1 Score: 290 bits (742), Expect = 8.350e-88
Identity = 152/328 (46.34%), Postives = 209/328 (63.72%), Query Frame = 1
Query:    1 ANLSALGQKARPVAYGDVLQRVIGAVFCRRYGKKLADYFQPWGQYGVAVSGGVEIMALTVTLGFEYDCAILSYDGQNAFNSIYRHRFLPALAEIVPSMVSYASNLYAREPQKLLFALDGGGLEVVESARGVQQGCYLGPLCYSADSLKILKEFRANPPVPRARAVSFIDDITVILPPKLSIDMAAIGKFTEWLQKRLGVEGISLNRRKSQALLAYGVWPEQLTEEQRVAMDTTGLTVVRQGMRVVGVPVGTEQFQRDFVQKAVNGEPAELVRALIPMEDAQASFQSLCLSATSRFSYLLRTVPPSIICQAAANYDALVEWALAFIIAG 984
            ANLSALG+K RP+A G VL+R+I   FCR+Y   +A+ F+   Q+G  V GGVEI+A T  L  +    ILS+DG+NA+NS+ R   LPA+A   P +V Y  N+YAR   KLLF ++ G +EVV S RGVQQGC LG   +    L I+KEF   PPVP  + + ++DD+   LPP L+ +M AI   T W+Q+RL  +GI L+  KS+ L   G+    LT +++  +   GL+V   GM VVG+PVGTE+FQR+FV K   G+PAEL+  L  ++D QAS+Q L LS   R  +LLRT+ PSI   AA  +D ++ WA++ I+ G
Sbjct:  186 ANLSALGEKKRPIAVGGVLRRIISGSFCRQYKGGIANIFEAANQFGGGVPGGVEIVASTAALSHQQGSTILSFDGKNAYNSMRRSSILPAVATHTPHLVKYFGNIYARTKAKLLFKMEDGSIEVVLSQRGVQQGCNLGGFGFCVGLLDIMKEFNNKPPVPGVKLIGYVDDLQAHLPPGLARNMQAISTVTNWIQERLSQKGIELSLPKSKVLFPEGLCMSSLTNDEQQQLTKIGLSVTEGGMPVVGIPVGTEEFQRNFVSKIARGDPAELILRLATLDDPQASYQLLRLSGVPRLFHLLRTIAPSITNSAAKIHDNMMMWAMSKIVLG 513          
BLAST of mRNA_H-elongata_contig82699.15914.1 vs. uniprot
Match: A0A6H5KSY9_9PHAE (Reverse transcriptase domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KSY9_9PHAE)

HSP 1 Score: 280 bits (716), Expect = 2.070e-87
Identity = 150/328 (45.73%), Postives = 205/328 (62.50%), Query Frame = 1
Query:    1 ANLSALGQKARPVAYGDVLQRVIGAVFCRRYGKKLADYFQPWGQYGVAVSGGVEIMALTVTLGFEYDCAILSYDGQNAFNSIYRHRFLPALAEIVPSMVSYASNLYAREPQKLLFALDGGGLEVVESARGVQQGCYLGPLCYSADSLKILKEFRANPPVPRARAVSFIDDITVILPPKLSIDMAAIGKFTEWLQKRLGVEGISLNRRKSQALLAYGVWPEQLTEEQRVAMDTTGLTVVRQGMRVVGVPVGTEQFQRDFVQKAVNGEPAELVRALIPMEDAQASFQSLCLSATSRFSYLLRTVPPSIICQAAANYDALVEWALAFIIAG 984
            ANLSALG+K RP+A G VL+R+I   FCR+Y   +A+ F+   Q+G  V GGVEI+A T  L  +    ILS+DG+NA+NS+ R   LPA+A   P +  Y  N+YAR   KLLF ++ G +EVV S RGVQQGC LG   +    L I+KEF   PPVP A+ + ++DD+ V LPP L+ ++ AI   T W+Q  L  +GI L+  KS  L   G++   LT +++  +  TGL+V   GM +VGVPVGTE FQR FV     G PAEL+  L  ++D Q S+Q L +S   R  +LLRT+ PSI   AA  +D+L+ WA++ I+ G
Sbjct:   34 ANLSALGEKKRPIAVGGVLRRIISGSFCRQYKGGIANIFEAANQFGGGVPGGVEIVASTAALSHQQGSTILSFDGKNAYNSMRRSSILPAVATHTPHLAKYFGNIYARTKAKLLFKMEDGSIEVVLSQRGVQQGCNLGGFGFCVGLLDIMKEFNNKPPVPGAKLIGYVDDLQVHLPPGLARNIQAIATVTNWIQDHLLQKGIELSLPKSNVLFPEGLFFSSLTNDEQRDLTKTGLSVAEGGMAIVGVPVGTECFQRSFVTNFARGIPAELIPRLSTLDDPQTSYQLLRMSGVPRLFHLLRTIAPSITNTAAREHDSLMIWAVSKIVLG 361          
BLAST of mRNA_H-elongata_contig82699.15914.1 vs. uniprot
Match: A0A6H5LN63_9PHAE (Reverse transcriptase domain-containing protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LN63_9PHAE)

HSP 1 Score: 290 bits (742), Expect = 2.560e-86
Identity = 152/328 (46.34%), Postives = 209/328 (63.72%), Query Frame = 1
Query:    1 ANLSALGQKARPVAYGDVLQRVIGAVFCRRYGKKLADYFQPWGQYGVAVSGGVEIMALTVTLGFEYDCAILSYDGQNAFNSIYRHRFLPALAEIVPSMVSYASNLYAREPQKLLFALDGGGLEVVESARGVQQGCYLGPLCYSADSLKILKEFRANPPVPRARAVSFIDDITVILPPKLSIDMAAIGKFTEWLQKRLGVEGISLNRRKSQALLAYGVWPEQLTEEQRVAMDTTGLTVVRQGMRVVGVPVGTEQFQRDFVQKAVNGEPAELVRALIPMEDAQASFQSLCLSATSRFSYLLRTVPPSIICQAAANYDALVEWALAFIIAG 984
            ANLSALG+K RP+A G VL+R+I   FCR+Y   +A+ F+   Q+G  V GGVEI+A T  L  +    ILS+DG+NA+NS+ R   LPA+A   P +V Y  N+YAR   KLLF ++ G +EVV S RGVQQGC LG   +    L I+KEF   PPVP  + + ++DD+   LPP L+ +M AI   T W+Q+RL  +GI L+  KS+ L   G+    LT +++  +   GL+V   GM VVG+PVGTE+FQR+FV K   G+PAEL+  L  ++D QAS+Q L LS   R  +LLRT+ PSI   AA  +D ++ WA++ I+ G
Sbjct:  186 ANLSALGEKKRPIAVGGVLRRIISGSFCRQYKGGIANIFEAANQFGGGVPGGVEIVASTAALSHQQGSTILSFDGKNAYNSMRRSSILPAVATHTPHLVKYFGNIYARTKAKLLFKMEDGSIEVVLSQRGVQQGCNLGGFGFCVGLLDIMKEFNNKPPVPGVKLIGYVDDLQAHLPPGLARNMQAISTVTNWIQERLSQKGIELSLPKSKVLFPEGLCMSSLTNDEQQQLTKIGLSVAEGGMPVVGIPVGTEEFQRNFVSKIARGDPAELILRLATLDDPQASYQLLRLSGVPRLFHLLRTIAPSITNSAAKIHDNMMMWAMSKIVLG 513          
BLAST of mRNA_H-elongata_contig82699.15914.1 vs. uniprot
Match: A0A6H5K1H0_9PHAE (Reverse transcriptase domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K1H0_9PHAE)

HSP 1 Score: 288 bits (736), Expect = 5.050e-85
Identity = 151/328 (46.04%), Postives = 209/328 (63.72%), Query Frame = 1
Query:    1 ANLSALGQKARPVAYGDVLQRVIGAVFCRRYGKKLADYFQPWGQYGVAVSGGVEIMALTVTLGFEYDCAILSYDGQNAFNSIYRHRFLPALAEIVPSMVSYASNLYAREPQKLLFALDGGGLEVVESARGVQQGCYLGPLCYSADSLKILKEFRANPPVPRARAVSFIDDITVILPPKLSIDMAAIGKFTEWLQKRLGVEGISLNRRKSQALLAYGVWPEQLTEEQRVAMDTTGLTVVRQGMRVVGVPVGTEQFQRDFVQKAVNGEPAELVRALIPMEDAQASFQSLCLSATSRFSYLLRTVPPSIICQAAANYDALVEWALAFIIAG 984
            ANLSALG+K RP+A G VL+R+I   F R+Y   +A+ F+   Q+G  V GGVEI+A T  L  +    ILS+DG+NA+NS+ R   LPA+A + P +V Y  N+YAR   KLLF ++ G +EVV S RGVQQGC LG   +    L I+KEF   PPVP  + + ++DD+   LPP L+ +M AI   T W+Q+RL  +GI L+  KS+ L   G+    LT +++  +   GL+V   GM VVG+PVGTE+FQR+FV K   G+PAEL+  L  ++D QAS+Q L LS   R  +LLRT+ PSI   AA  +D ++ WA++ I+ G
Sbjct:   34 ANLSALGEKKRPIAVGGVLRRIISGSFYRQYKGGIANIFEAANQFGGGVPGGVEIVASTAALSHQQGSTILSFDGKNAYNSMRRSSILPAVATLTPHLVKYFGNIYARTKAKLLFKMEDGSIEVVLSQRGVQQGCNLGGFGFCVGLLDIMKEFNNKPPVPGVKLIGYVDDLQAHLPPGLARNMQAISTVTNWIQERLSQKGIELSLPKSKVLFPEGLCMSSLTNDEQQQLTKIGLSVAEGGMPVVGIPVGTEEFQRNFVSKIARGDPAELILRLATLDDPQASYQLLRLSGVPRLFHLLRTIAPSITNSAAKIHDNMMMWAMSKIVLG 361          
BLAST of mRNA_H-elongata_contig82699.15914.1 vs. uniprot
Match: A0A6H5KQ62_9PHAE (Reverse transcriptase domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQ62_9PHAE)

HSP 1 Score: 196 bits (498), Expect = 4.340e-56
Identity = 101/212 (47.64%), Postives = 136/212 (64.15%), Query Frame = 1
Query:    1 ANLSALGQKARPVAYGDVLQRVIGAVFCRRYGKKLADYFQPWGQYGVAVSGGVEIMALTVTLGFEYDCAILSYDGQNAFNSIYRHRFLPALAEIVPSMVSYASNLYAREPQKLLFALDGGGLEVVESARGVQQGCYLGPLCYSADSLKILKEFRANPPVPRARAVSFIDDITVILPPKLSIDMAAIGKFTEWLQKRLGVEGISLNRRKSQAL 636
            ANLSALG+K RP+A G VL+R+I   FCR+Y   +A+ F+   Q+G  V GGVEI+A T  L  +    ILS+DG+NA+NS+ R   LPA+A   P +V Y  N+YAR   KLLF ++ G +EVV S RGVQQGC LG   +    L I+KEF   PPVP  + + ++DD+   LPP L+ +M AI   T W+Q+RL  +GI L+  KS+ L
Sbjct:  186 ANLSALGEKKRPIAVGGVLRRIISGSFCRQYKGGIANIFEAANQFGGGVPGGVEIVASTAALSHQQGSTILSFDGKNAYNSMRRSSILPAVATHTPHLVKYFGNIYARTKAKLLFKMEDGSIEVVLSQRGVQQGCNLGGFGFCVGLLDIMKEFNNKPPVPGVKLIGYVDDLQAHLPPGLARNMQAISTVTNWIQERLSQKGIELSLPKSKVL 397          
BLAST of mRNA_H-elongata_contig82699.15914.1 vs. uniprot
Match: A0A6H5K541_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K541_9PHAE)

HSP 1 Score: 177 bits (449), Expect = 3.860e-50
Identity = 95/212 (44.81%), Postives = 131/212 (61.79%), Query Frame = 1
Query:  349 LDGGGLEVVESARGVQQGCYLGPLCYSADSLKILKEFRANPPVPRARAVSFIDDITVILPPKLSIDMAAIGKFTEWLQKRLGVEGISLNRRKSQALLAYGVWPEQLTEEQRVAMDTTGLTVVRQGMRVVGVPVGTEQFQRDFVQKAVNGEPAELVRALIPMEDAQASFQSLCLSATSRFSYLLRTVPPSIICQAAANYDALVEWALAFIIAG 984
            ++ G +E+V S RGVQQGC LG   +S   L  +KEF   PPVP A+ + ++DD+ V LPP L+ ++ AI   T W+Q  L  +GI L+  KS+ L   G +   LT +++  +  TGL+V   GM +VGVPVGTE FQR FV     G PAEL+R L  ++D QAS+Q L LS   R  +LLRT+ PSI   AA  +D L+ WA++ I+ G
Sbjct:    1 MEDGSIEIVRSQRGVQQGCNLGGFGFSVGLLDTMKEFNDKPPVPGAKLIGYVDDLQVHLPPGLARNIQAIATVTNWIQDHLLQKGIELSLPKSKVLFPEGFFFSSLTNDEQRDLTKTGLSVAEGGMAIVGVPVGTECFQRSFVTNFARGNPAELIRRLSTLDDPQASYQLLRLSGVPRLFHLLRTIAPSITNTAAREHDNLMIWAVSKIVLG 212          
BLAST of mRNA_H-elongata_contig82699.15914.1 vs. uniprot
Match: A0A6H5JLD7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JLD7_9PHAE)

HSP 1 Score: 150 bits (380), Expect = 1.150e-39
Identity = 77/179 (43.02%), Postives = 112/179 (62.57%), Query Frame = 1
Query:  448 LKEFRANPPVPRARAVSFIDDITVILPPKLSIDMAAIGKFTEWLQKRLGVEGISLNRRKSQALLAYGVWPEQLTEEQRVAMDTTGLTVVRQGMRVVGVPVGTEQFQRDFVQKAVNGEPAELVRALIPMEDAQASFQSLCLSATSRFSYLLRTVPPSIICQAAANYDALVEWALAFIIAG 984
            +KEF   PPVP  + + ++DD+   LPP L+ +M AI   T W+Q+RL  +GI L+  KS+ L   G+    LT +++  +   GL+V   GM VVG+P GTE+FQR+FV K   G+PAEL+  L  ++D QAS+Q L LS   R  +LLRT+ PSI   AA  +D ++ WA++ I+ G
Sbjct:    1 MKEFNNKPPVPGVKLIGYVDDLQAHLPPGLARNMQAISTVTNWIQERLSQKGIELSLPKSKVLFPEGLCMSSLTNDEQQQLTKIGLSVAEGGMPVVGIPAGTEEFQRNFVSKIARGDPAELILRLATLDDPQASYQLLRLSGVPRLFHLLRTIAPSITNSAAKIHDNMMMWAMSKIVLG 179          
BLAST of mRNA_H-elongata_contig82699.15914.1 vs. uniprot
Match: A0A6H5JH58_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JH58_9PHAE)

HSP 1 Score: 158 bits (400), Expect = 1.900e-39
Identity = 104/323 (32.20%), Postives = 167/323 (51.70%), Query Frame = 1
Query:    1 ANLSALGQKARPVAYGDVLQRVIGAVFCRRYGKKLADYFQPWGQYGVAVSGGVEIMALTVTLGFEYDCAILSYDGQNAFNSIYRHRFLPALAEIVPSMVSYASNLYAREPQKLLFALDGGGLEVVESARGVQQGCYLGPLCYSADSLKILKEFRANPPVPRARAVSFIDDITVILPPKLSIDMAAIGKFTEWLQKRLGVEGISLNRRKSQALLAYGVWPEQLTEEQRVAMDTTGLTVVRQGMRVVGVPVGTEQFQRDFVQKAVNGEPAELVRALIP-MEDAQASFQSLCLSATSRFSYLLRTVPPSIICQAAANYDALVEWAL 966
            ++L ALG+K RPV  G   +R+I A   R++  KL + F+   Q+GVAV+GGVE +A+   L  +    I+  D  NAFN+  R   +   A+ +P +V Y +  Y   P   ++ +D G    +E   GVQQG  +GP  +S   + I+ + +           +++DDIT+ L       + A+    +     L   GI +NR KS AL   G     +T++QR  ++  GLTV  +G+ VVGVP+GT+ + R+F  K +    AE +  ++P M D Q +     LS   R +Y+ R + P++  +A    D +V+WAL
Sbjct:  608 SSLIALGEKCRPVCIGMTWRRLIAAGTVRQWKPKLEEMFREANQFGVAVAGGVERVAMEAQLVHQTGNWIIQTDCSNAFNTGKRTAIMAQAAKSLPDLVGYIARCYDEIPATAVYEMDSGERRTLECTSGVQQGDGMGPPLFSLILIPIILKLQDKYKPLGVAFKAYMDDITLHLKDLTEESVQAMTDLVD----ELAEVGIVVNRAKSSALPPPG---HMITDQQRRLLEGVGLTVAGEGITVVGVPIGTDNYVREFAMKVITEGGAEKLARMLPLMSDRQVANLITSLSLIQRSAYIERGIDPTLTKEACERLDNMVQWAL 923          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig82699.15914.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6P0N5L4_9CYAN7.150e-8946.65Patatin-like protein n=1 Tax=Moorena sp. SIO3C2 Ta... [more]
A0A6H5KGJ4_9PHAE5.580e-8846.65Reverse transcriptase domain-containing protein n=... [more]
A0A6H5JCM0_9PHAE8.350e-8846.34Reverse transcriptase domain-containing protein (F... [more]
A0A6H5KSY9_9PHAE2.070e-8745.73Reverse transcriptase domain-containing protein (F... [more]
A0A6H5LN63_9PHAE2.560e-8646.34Reverse transcriptase domain-containing protein n=... [more]
A0A6H5K1H0_9PHAE5.050e-8546.04Reverse transcriptase domain-containing protein n=... [more]
A0A6H5KQ62_9PHAE4.340e-5647.64Reverse transcriptase domain-containing protein (F... [more]
A0A6H5K541_9PHAE3.860e-5044.81Reverse transcriptase domain-containing protein n=... [more]
A0A6H5JLD7_9PHAE1.150e-3943.02Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JH58_9PHAE1.900e-3932.20Reverse transcriptase domain-containing protein n=... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig82699contigH-elongata_contig82699:1550..2533 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score79.0
Seed ortholog evalue4.7e-12
Seed eggNOG ortholog400682.PAC_15702057
EggNOG free text desc.Ribonuclease H protein
EggNOG OGsKOG1075@1,KOG1075@2759
COG Functional cat.E
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons1
Model size984
Cds size984
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931233.4054127-CDS-H-elongata_contig82699:1549..25331622931233.4054127-CDS-H-elongata_contig82699:1549..2533Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig82699 1550..2533 -
1691679752.7684085-CDS-H-elongata_contig82699:1549..25331691679752.7684085-CDS-H-elongata_contig82699:1549..2533Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig82699 1550..2533 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig82699.15914.1prot_H-elongata_contig82699.15914.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig82699 1550..2533 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig82699.15914.1

>prot_H-elongata_contig82699.15914.1 ID=prot_H-elongata_contig82699.15914.1|Name=mRNA_H-elongata_contig82699.15914.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=328bp
ANLSALGQKARPVAYGDVLQRVIGAVFCRRYGKKLADYFQPWGQYGVAVS
GGVEIMALTVTLGFEYDCAILSYDGQNAFNSIYRHRFLPALAEIVPSMVS
YASNLYAREPQKLLFALDGGGLEVVESARGVQQGCYLGPLCYSADSLKIL
KEFRANPPVPRARAVSFIDDITVILPPKLSIDMAAIGKFTEWLQKRLGVE
GISLNRRKSQALLAYGVWPEQLTEEQRVAMDTTGLTVVRQGMRVVGVPVG
TEQFQRDFVQKAVNGEPAELVRALIPMEDAQASFQSLCLSATSRFSYLLR
TVPPSIICQAAANYDALVEWALAFIIAG
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mRNA from alignment at H-elongata_contig82699:1550..2533-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig82699.15914.1 ID=mRNA_H-elongata_contig82699.15914.1|Name=mRNA_H-elongata_contig82699.15914.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=984bp|location=Sequence derived from alignment at H-elongata_contig82699:1550..2533- (Himanthalia elongata Himel1 dioecious)
GCCAACCTTTCCGCGCTGGGGCAAAAGGCGAGACCAGTGGCGTACGGTGA TGTCTTGCAGAGAGTTATTGGTGCTGTTTTCTGTCGCCGATACGGCAAGA AGCTGGCAGACTACTTCCAGCCCTGGGGGCAGTACGGCGTAGCAGTTTCA GGTGGAGTAGAGATAATGGCGCTCACAGTAACACTGGGTTTCGAATATGA TTGCGCAATTCTCTCATACGACGGACAAAACGCCTTCAACAGTATATACC GCCACAGGTTCCTGCCCGCGCTGGCGGAAATTGTTCCCTCAATGGTCTCC TACGCATCTAACTTGTACGCAAGGGAACCCCAAAAACTCCTGTTTGCACT AGATGGCGGAGGTTTGGAAGTGGTTGAATCAGCGCGAGGAGTACAGCAAG GATGTTATCTAGGCCCACTTTGCTATAGCGCAGACTCACTGAAGATCCTA AAAGAATTCAGGGCTAATCCACCGGTGCCAAGAGCGAGAGCGGTTTCGTT CATCGACGACATCACGGTCATCCTACCACCGAAACTCTCTATCGATATGG CAGCAATAGGGAAATTTACGGAATGGCTACAGAAACGCCTGGGGGTAGAA GGCATCTCGCTGAACCGAAGAAAGTCGCAGGCCTTGCTAGCATATGGAGT TTGGCCAGAACAACTGACGGAGGAGCAGCGGGTGGCAATGGATACCACAG GGCTCACGGTAGTCCGACAGGGGATGAGGGTTGTGGGAGTACCAGTTGGA ACAGAACAGTTCCAGCGCGATTTCGTACAGAAGGCGGTTAATGGAGAGCC AGCTGAGCTTGTGAGGGCGCTGATCCCGATGGAGGATGCCCAAGCGAGCT TTCAGAGCTTGTGTTTATCTGCCACTTCTCGCTTTTCATATCTCCTTCGA ACAGTCCCGCCCTCCATCATCTGCCAAGCCGCAGCAAATTACGATGCCTT GGTGGAGTGGGCTTTGGCGTTTATCATAGCTGGT
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Coding sequence (CDS) from alignment at H-elongata_contig82699:1550..2533-

>mRNA_H-elongata_contig82699.15914.1 ID=mRNA_H-elongata_contig82699.15914.1|Name=mRNA_H-elongata_contig82699.15914.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1968bp|location=Sequence derived from alignment at H-elongata_contig82699:1550..2533- (Himanthalia elongata Himel1 dioecious)
GCCAACCTTTCCGCGCTGGGGCAAAAGGCGAGACCAGTGGCGTACGGTGA
TGTCTTGCAGAGAGTTATTGGTGCTGTTTTCTGTCGCCGATACGGCAAGA
AGCTGGCAGACTACTTCCAGCCCTGGGGGCAGTACGGCGTAGCAGTTTCA
GGTGGAGTAGAGATAATGGCGCTCACAGTAACACTGGGTTTCGAATATGA
TTGCGCAATTCTCTCATACGACGGACAAAACGCCTTCAACAGTATATACC
GCCACAGGTTCCTGCCCGCGCTGGCGGAAATTGTTCCCTCAATGGTCTCC
TACGCATCTAACTTGTACGCAAGGGAACCCCAAAAACTCCTGTTTGCACT
AGATGGCGGAGGTTTGGAAGTGGTTGAATCAGCGCGAGGAGTACAGCAAG
GATGTTATCTAGGCCCACTTTGCTATAGCGCAGACTCACTGAAGATCCTA
AAAGAATTCAGGGCTAATCCACCGGTGCCAAGAGCGAGAGCGGTTTCGTT
CATCGACGACATCACGGTCATCCTACCACCGAAACTCTCTATCGATATGG
CAGCAATAGGGAAATTTACGGAATGGCTACAGAAACGCCTGGGGGTAGAA
GGCATCTCGCTGAACCGAAGAAAGTCGCAGGCCTTGCTAGCATATGGAGT
TTGGCCAGAACAACTGACGGAGGAGCAGCGGGTGGCAATGGATACCACAG
GGCTCACGGTAGTCCGACAGGGGATGAGGGTTGTGGGAGTACCAGTTGGA
ACAGAACAGTTCCAGCGCGATTTCGTACAGAAGGCGGTTAATGGAGAGCC
AGCTGAGCTTGTGAGGGCGCTGATCCCGATGGAGGATGCCCAAGCGAGCT
TTCAGAGCTTGTGTTTATCTGCCACTTCTCGCTTTTCATATCTCCTTCGA
ACAGTCCCGCCCTCCATCATCTGCCAAGCCGCAGCAAATTACGATGCCTT
GGTGGAGTGGGCTTTGGCGTTTATCATAGCTGGTGCCAACCTTTCCGCGC
TGGGGCAAAAGGCGAGACCAGTGGCGTACGGTGATGTCTTGCAGAGAGTT
ATTGGTGCTGTTTTCTGTCGCCGATACGGCAAGAAGCTGGCAGACTACTT
CCAGCCCTGGGGGCAGTACGGCGTAGCAGTTTCAGGTGGAGTAGAGATAA
TGGCGCTCACAGTAACACTGGGTTTCGAATATGATTGCGCAATTCTCTCA
TACGACGGACAAAACGCCTTCAACAGTATATACCGCCACAGGTTCCTGCC
CGCGCTGGCGGAAATTGTTCCCTCAATGGTCTCCTACGCATCTAACTTGT
ACGCAAGGGAACCCCAAAAACTCCTGTTTGCACTAGATGGCGGAGGTTTG
GAAGTGGTTGAATCAGCGCGAGGAGTACAGCAAGGATGTTATCTAGGCCC
ACTTTGCTATAGCGCAGACTCACTGAAGATCCTAAAAGAATTCAGGGCTA
ATCCACCGGTGCCAAGAGCGAGAGCGGTTTCGTTCATCGACGACATCACG
GTCATCCTACCACCGAAACTCTCTATCGATATGGCAGCAATAGGGAAATT
TACGGAATGGCTACAGAAACGCCTGGGGGTAGAAGGCATCTCGCTGAACC
GAAGAAAGTCGCAGGCCTTGCTAGCATATGGAGTTTGGCCAGAACAACTG
ACGGAGGAGCAGCGGGTGGCAATGGATACCACAGGGCTCACGGTAGTCCG
ACAGGGGATGAGGGTTGTGGGAGTACCAGTTGGAACAGAACAGTTCCAGC
GCGATTTCGTACAGAAGGCGGTTAATGGAGAGCCAGCTGAGCTTGTGAGG
GCGCTGATCCCGATGGAGGATGCCCAAGCGAGCTTTCAGAGCTTGTGTTT
ATCTGCCACTTCTCGCTTTTCATATCTCCTTCGAACAGTCCCGCCCTCCA
TCATCTGCCAAGCCGCAGCAAATTACGATGCCTTGGTGGAGTGGGCTTTG
GCGTTTATCATAGCTGGT
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