mRNA_H-elongata_contig82617.15908.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig82617.15908.1
Unique NamemRNA_H-elongata_contig82617.15908.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig82617.15908.1 vs. uniprot
Match: D8LBU4_ECTSI (Carboxypeptidase n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LBU4_ECTSI)

HSP 1 Score: 119 bits (298), Expect = 3.210e-30
Identity = 53/69 (76.81%), Postives = 57/69 (82.61%), Query Frame = 1
Query:    1 CVSLCLLATAAGPCTVNEDGESTTPNPNSWNLRATVIWVDQPAGVGFSYGQAPGDFDHGEEQVGEDMFW 207
            C S   L    GPCTVNEDGE+T PNP+SWN RA VIWVDQPAGVGFSYG+APGDFDHGE+ VGEDMFW
Sbjct:   85 CSSTLALLAENGPCTVNEDGETTMPNPSSWNSRANVIWVDQPAGVGFSYGKAPGDFDHGEDAVGEDMFW 153          
BLAST of mRNA_H-elongata_contig82617.15908.1 vs. uniprot
Match: A0A6S9GAZ6_HETAK (Carboxypeptidase n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6S9GAZ6_HETAK)

HSP 1 Score: 90.9 bits (224), Expect = 8.180e-20
Identity = 43/68 (63.24%), Postives = 49/68 (72.06%), Query Frame = 1
Query:    1 CVSLCLLATAAGPCTVNEDGESTTPNPNSWNLRATVIWVDQPAGVGFSYGQAPGDFDHGEEQVGEDMF 204
            C S+  L    GPCTVNEDG STT NP SWN  A ++WVDQPAGVGFSYG A  D+D  E +VGEDM+
Sbjct:   97 CSSILALLAENGPCTVNEDGASTTVNPFSWNSHANIMWVDQPAGVGFSYGAAS-DYDRNEAEVGEDMY 163          
BLAST of mRNA_H-elongata_contig82617.15908.1 vs. uniprot
Match: A0A8J2AFN5_9DINO (Carboxypeptidase n=1 Tax=Amoebophrya sp. A25 TaxID=1410381 RepID=A0A8J2AFN5_9DINO)

HSP 1 Score: 82.0 bits (201), Expect = 1.280e-16
Identity = 38/68 (55.88%), Postives = 46/68 (67.65%), Query Frame = 1
Query:    1 CVSLCLLATAAGPCTVNEDGESTTPNPNSWNLRATVIWVDQPAGVGFSYGQAPGDFDHGEEQVGEDMF 204
            C S+  L +  GPC+V EDG+S  PNP  WN ++ VIWVDQPAG GFS     GD+DH EE V EDM+
Sbjct:  127 CSSIMALLSENGPCSVGEDGKSLKPNPYGWNQKSNVIWVDQPAGTGFS----EGDYDHNEEGVAEDMY 190          
BLAST of mRNA_H-elongata_contig82617.15908.1 vs. uniprot
Match: A0A4Q3BNF4_9BACT (Uncharacterized protein (Fragment) n=1 Tax=Verrucomicrobiaceae bacterium TaxID=2026800 RepID=A0A4Q3BNF4_9BACT)

HSP 1 Score: 81.3 bits (199), Expect = 1.350e-16
Identity = 40/68 (58.82%), Postives = 44/68 (64.71%), Query Frame = 1
Query:    1 CVSLCLLATAAGPCTVNEDGESTTPNPNSWNLRATVIWVDQPAGVGFSYGQAPGDFDHGEEQVGEDMF 204
            C S   L    GPC V EDG STTPNP SWN  A ++WVDQPAGVGFSYG      DH E +V EDM+
Sbjct:   24 CSSQLALLFENGPCKVTEDGLSTTPNPFSWNNNANILWVDQPAGVGFSYGAK---VDHNETEVSEDMY 88          
BLAST of mRNA_H-elongata_contig82617.15908.1 vs. uniprot
Match: F2UBQ6_SALR5 (Carboxypeptidase n=1 Tax=Salpingoeca rosetta (strain ATCC 50818 / BSB-021) TaxID=946362 RepID=F2UBQ6_SALR5)

HSP 1 Score: 81.3 bits (199), Expect = 2.170e-16
Identity = 40/68 (58.82%), Postives = 46/68 (67.65%), Query Frame = 1
Query:    1 CVSLCLLATAAGPCTVNEDGESTTPNPNSWNLRATVIWVDQPAGVGFSYGQAPGDFDHGEEQVGEDMF 204
            C S   L    GPCTVN+DG +T  NP  WN +A +I+VDQPAGVGFSYG A GD DH E  V EDM+
Sbjct:   89 CSSQLALLFENGPCTVNQDGTATIENPFGWNAQANIIFVDQPAGVGFSYGDA-GDEDHNEAMVAEDMY 155          
BLAST of mRNA_H-elongata_contig82617.15908.1 vs. uniprot
Match: A0A485KKN0_9STRA (Aste57867_8544 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485KKN0_9STRA)

HSP 1 Score: 80.9 bits (198), Expect = 3.180e-16
Identity = 39/66 (59.09%), Postives = 44/66 (66.67%), Query Frame = 1
Query:    7 SLCLLATAAGPCTVNEDGESTTPNPNSWNLRATVIWVDQPAGVGFSYGQAPGDFDHGEEQVGEDMF 204
            SL  L T  GPC V  D  STT NP SW   A+V+WVDQP G GFSYG APGDFD  E+ VG +M+
Sbjct:  105 SLLALLTENGPCVVGADANSTTSNPYSWTNNASVLWVDQPTGTGFSYG-APGDFDRTEDDVGANMY 169          
BLAST of mRNA_H-elongata_contig82617.15908.1 vs. uniprot
Match: A0A7S4END1_9STRA (Carboxypeptidase n=2 Tax=Pseudo-nitzschia australis TaxID=44445 RepID=A0A7S4END1_9STRA)

HSP 1 Score: 79.7 bits (195), Expect = 8.440e-16
Identity = 38/69 (55.07%), Postives = 48/69 (69.57%), Query Frame = 1
Query:    1 CVSLCLLATAAGPCTVNEDGESTTPNPNSWNLRATVIWVDQPAGVGFSYGQAPGDFDHGEEQVGEDMFW 207
            C S   L T  GPC+V++DG+ TT NP+SW   A V+W+DQPAGVGFSYG    + D GEE VGED ++
Sbjct:  213 CSSTLALLTENGPCSVDKDGKGTTVNPHSWTEAAHVLWLDQPAGVGFSYGD---ENDSGEEMVGEDAYY 278          
BLAST of mRNA_H-elongata_contig82617.15908.1 vs. uniprot
Match: A0A7S2RD97_9STRA (Carboxypeptidase n=1 Tax=Eucampia antarctica TaxID=49252 RepID=A0A7S2RD97_9STRA)

HSP 1 Score: 79.0 bits (193), Expect = 1.540e-15
Identity = 37/69 (53.62%), Postives = 47/69 (68.12%), Query Frame = 1
Query:    1 CVSLCLLATAAGPCTVNEDGESTTPNPNSWNLRATVIWVDQPAGVGFSYGQAPGDFDHGEEQVGEDMFW 207
            C S   L T  GPC+VN+DG +T  NPNSW   A V+W+DQPAGVGFSYG+   + D  EE +GED ++
Sbjct:  129 CSSSLALLTENGPCSVNKDGATTKQNPNSWTEAANVLWLDQPAGVGFSYGK---ENDSNEEMIGEDAYF 194          
BLAST of mRNA_H-elongata_contig82617.15908.1 vs. uniprot
Match: A0A1Z5KH36_FISSO (Carboxypeptidase n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5KH36_FISSO)

HSP 1 Score: 78.6 bits (192), Expect = 2.130e-15
Identity = 38/69 (55.07%), Postives = 47/69 (68.12%), Query Frame = 1
Query:    1 CVSLCLLATAAGPCTVNEDGESTTPNPNSWNLRATVIWVDQPAGVGFSYGQAPGDFDHGEEQVGEDMFW 207
            C S   L T  GPC+VN DG+STT NP+SW   A V+W+DQPAGVGFSYGQ   + D  E+ V ED ++
Sbjct:  168 CSSTLALLTENGPCSVNPDGKSTTVNPHSWTETAHVLWLDQPAGVGFSYGQ---ETDANEQMVAEDAYY 233          
BLAST of mRNA_H-elongata_contig82617.15908.1 vs. uniprot
Match: W7TS34_9STRA (Carboxypeptidase n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TS34_9STRA)

HSP 1 Score: 77.8 bits (190), Expect = 3.820e-15
Identity = 36/68 (52.94%), Postives = 45/68 (66.18%), Query Frame = 1
Query:    1 CVSLCLLATAAGPCTVNEDGESTTPNPNSWNLRATVIWVDQPAGVGFSYGQAPGDFDHGEEQVGEDMF 204
            C S+  L    GPC VNE G  T  NP+SWN  A ++W+DQP GVGFSYG+   D+  GEE VGED++
Sbjct:  119 CSSILALFVENGPCYVNEWGNGTVLNPDSWNSNANILWIDQPVGVGFSYGERA-DYVDGEEGVGEDLY 185          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig82617.15908.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LBU4_ECTSI3.210e-3076.81Carboxypeptidase n=2 Tax=Ectocarpus TaxID=2879 Rep... [more]
A0A6S9GAZ6_HETAK8.180e-2063.24Carboxypeptidase n=1 Tax=Heterosigma akashiwo TaxI... [more]
A0A8J2AFN5_9DINO1.280e-1655.88Carboxypeptidase n=1 Tax=Amoebophrya sp. A25 TaxID... [more]
A0A4Q3BNF4_9BACT1.350e-1658.82Uncharacterized protein (Fragment) n=1 Tax=Verruco... [more]
F2UBQ6_SALR52.170e-1658.82Carboxypeptidase n=1 Tax=Salpingoeca rosetta (stra... [more]
A0A485KKN0_9STRA3.180e-1659.09Aste57867_8544 protein n=1 Tax=Aphanomyces stellat... [more]
A0A7S4END1_9STRA8.440e-1655.07Carboxypeptidase n=2 Tax=Pseudo-nitzschia australi... [more]
A0A7S2RD97_9STRA1.540e-1553.62Carboxypeptidase n=1 Tax=Eucampia antarctica TaxID... [more]
A0A1Z5KH36_FISSO2.130e-1555.07Carboxypeptidase n=2 Tax=Fistulifera solaris TaxID... [more]
W7TS34_9STRA3.820e-1552.94Carboxypeptidase n=1 Tax=Nannochloropsis gaditana ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig82617contigH-elongata_contig82617:2433..2642 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score120.9
Seed ortholog evalue2.3e-25
Seed eggNOG ortholog2880.D8LBU4
KEGG koko:K09645,ko:K13289,ko:K16298
KEGG Pathwayko04142,ko04614,map04142,map04614
EggNOG free text desc.PFAM Peptidase S10, serine carboxypeptidase
EggNOG OGsCOG2939@1,KOG1282@2759
EC3.4.16.5
COG Functional cat.E
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko01002,ko03110,ko04131,ko04147
Hectar predicted targeting categorysignal peptide
Ec32 ortholog descriptionSerine Carboxypeptidase
Ec32 orthologEc-27_002670.1
Exons1
Model size210
Cds size210
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931232.5113142-CDS-H-elongata_contig82617:2432..26421622931232.5113142-CDS-H-elongata_contig82617:2432..2642Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig82617 2433..2642 -
1691679752.4646103-CDS-H-elongata_contig82617:2432..26421691679752.4646103-CDS-H-elongata_contig82617:2432..2642Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig82617 2433..2642 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig82617.15908.1prot_H-elongata_contig82617.15908.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig82617 2433..2642 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig82617.15908.1

>prot_H-elongata_contig82617.15908.1 ID=prot_H-elongata_contig82617.15908.1|Name=mRNA_H-elongata_contig82617.15908.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=70bp
CVSLCLLATAAGPCTVNEDGESTTPNPNSWNLRATVIWVDQPAGVGFSYG
QAPGDFDHGEEQVGEDMFW*
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mRNA from alignment at H-elongata_contig82617:2433..2642-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig82617.15908.1 ID=mRNA_H-elongata_contig82617.15908.1|Name=mRNA_H-elongata_contig82617.15908.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=210bp|location=Sequence derived from alignment at H-elongata_contig82617:2433..2642- (Himanthalia elongata Himel1 dioecious)
TGCGTTTCTCTATGCTTGCTCGCCACCGCGGCAGGCCCATGCACGGTGAA CGAGGACGGAGAGTCAACAACCCCCAACCCGAACTCGTGGAACCTCAGGG CAACGGTGATATGGGTTGACCAGCCTGCCGGCGTGGGATTCAGCTACGGA CAAGCACCTGGAGACTTTGACCACGGCGAGGAGCAGGTCGGCGAGGACAT GTTCTGGTGA
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Coding sequence (CDS) from alignment at H-elongata_contig82617:2433..2642-

>mRNA_H-elongata_contig82617.15908.1 ID=mRNA_H-elongata_contig82617.15908.1|Name=mRNA_H-elongata_contig82617.15908.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=420bp|location=Sequence derived from alignment at H-elongata_contig82617:2433..2642- (Himanthalia elongata Himel1 dioecious)
TGCGTTTCTCTATGCTTGCTCGCCACCGCGGCAGGCCCATGCACGGTGAA
CGAGGACGGAGAGTCAACAACCCCCAACCCGAACTCGTGGAACCTCAGGG
CAACGGTGATATGGGTTGACCAGCCTGCCGGCGTGGGATTCAGCTACGGA
CAAGCACCTGGAGACTTTGACCACGGCGAGGAGCAGGTCGGCGAGGACAT
GTTCTGGTGATGCGTTTCTCTATGCTTGCTCGCCACCGCGGCAGGCCCAT
GCACGGTGAACGAGGACGGAGAGTCAACAACCCCCAACCCGAACTCGTGG
AACCTCAGGGCAACGGTGATATGGGTTGACCAGCCTGCCGGCGTGGGATT
CAGCTACGGACAAGCACCTGGAGACTTTGACCACGGCGAGGAGCAGGTCG
GCGAGGACATGTTCTGGTGA
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