mRNA_H-elongata_contig82541.15906.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig82541.15906.1
Unique NamemRNA_H-elongata_contig82541.15906.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig82541.15906.1 vs. uniprot
Match: D8LG27_ECTSI (Voltage dependent anion channel n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LG27_ECTSI)

HSP 1 Score: 134 bits (337), Expect = 1.230e-36
Identity = 67/86 (77.91%), Postives = 78/86 (90.70%), Query Frame = 1 
Query:    1 RVPPDILSDDYSLKRTLKMKHTTPEGLSVTSKSEHNKGMAAALEAKFFHAKSGVMIDKAKLNPDGSMGLEASMKGVAKDVRLLAKV 258
            +V  DILSDDY+LKRTLKMKHTTP G++VT+KSEH+KG+  ALEAKFFHAKSGV IDKAKLNPDGSMGLEAS + VAK+V+L+AKV
Sbjct:   59 KVARDILSDDYNLKRTLKMKHTTPHGVTVTAKSEHSKGVNGALEAKFFHAKSGVSIDKAKLNPDGSMGLEASRRDVAKNVKLVAKV 144
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BLAST of mRNA_H-elongata_contig82541.15906.1 vs. uniprot
Match: A0A6H5L9E4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L9E4_9PHAE)

HSP 1 Score: 107 bits (267), Expect = 6.490e-27
Identity = 52/68 (76.47%), Postives = 62/68 (91.18%), Query Frame = 1 
Query:   55 MKHTTPEGLSVTSKSEHNKGMAAALEAKFFHAKSGVMIDKAKLNPDGSMGLEASMKGVAKDVRLLAKV 258
            MKHTTP G++VT+KSEH+KG+  ALEAKFFHAKSGV IDKAKLNPDGSMGLEAS + +AK+V+L+AKV
Sbjct:    1 MKHTTPHGVTVTAKSEHSKGVNGALEAKFFHAKSGVSIDKAKLNPDGSMGLEASRRDIAKNVKLVAKV 68
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BLAST of mRNA_H-elongata_contig82541.15906.1 vs. uniprot
Match: A0A835YRG3_9STRA (Voltage dependent anion channel n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YRG3_9STRA)

HSP 1 Score: 84.3 bits (207), Expect = 8.390e-18
Identity = 40/84 (47.62%), Postives = 58/84 (69.05%), Query Frame = 1 
Query:   13 DILSDDYSLKRTLKMKHTTPEGLSVTSKSEHN--KGMAAALEAKFFHAKSGVMIDKAKLNPDGSMGLEASMKGVAKDVRLLAKV 258
            D+L+DDYSLK TLK+KHTTP  ++ T+++EH    G+A  L+ K+ H  SG  +DK  L PDG   +E S+ GVA+ ++L AK+
Sbjct:   16 DLLTDDYSLKNTLKLKHTTPHAVAFTAENEHKGASGVAGKLQLKYAHKPSGFSLDKVVLGPDGGTSVECSLAGVAEGLKLTAKI 99
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BLAST of mRNA_H-elongata_contig82541.15906.1 vs. uniprot
Match: A0A835YZM2_9STRA (Voltage dependent anion channel n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YZM2_9STRA)

HSP 1 Score: 71.6 bits (174), Expect = 4.960e-13
Identity = 38/88 (43.18%), Postives = 60/88 (68.18%), Query Frame = 1 
Query:    1 RVPPDILSDDYSLKRTLKMKHTTPEGLSVTSKSEHNKGMAAA--LEAKFFHAKSGVMIDKAKLNPDGSMGLEASMKGVAKDVRLLAKV 258
            +V  D+L+DD+SLKRT+K+KHTTP  ++ T ++EH KG A A  ++ K+ H  SG  +DK  +  +G+  +E S+ G+A  ++L AKV
Sbjct:   12 KVVNDLLTDDFSLKRTVKVKHTTPHNVNFTIENEH-KGSAVAGKVQLKYAHKPSGFALDKVTIAQNGAKTVECSLAGLAPGLKLTAKV 98
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BLAST of mRNA_H-elongata_contig82541.15906.1 vs. uniprot
Match: W7U0F0_9STRA (Voltage-dependent anion-selective channel n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7U0F0_9STRA)

HSP 1 Score: 58.2 bits (139), Expect = 2.770e-9
Identity = 29/67 (43.28%), Postives = 44/67 (65.67%), Query Frame = 1 
Query:   16 ILSDDYSLKRTLKMKHTTPEGLSVTSKSEHNK-----GMAAALEAKFFHAKSGVMIDKAKLNPDGSM 201
            IL+DDYSLKRTLK+KH TP+G++VT+++E         + A +  K+ HA +G  +DK +L   G +
Sbjct:   19 ILNDDYSLKRTLKVKHVTPDGVAVTTENELTGKDGKFDLKAKISGKYKHAATGFSVDKLQLKETGGL 85
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BLAST of mRNA_H-elongata_contig82541.15906.1 vs. uniprot
Match: W7U446_9STRA (Voltage-dependent anion-selective channel protein 2 n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7U446_9STRA)

HSP 1 Score: 55.5 bits (132), Expect = 4.610e-7
Identity = 31/70 (44.29%), Postives = 48/70 (68.57%), Query Frame = 1 
Query:   13 DILSDDYSLKRTLKMKHTTPEGLSVTSKSE-HNKGMAAALEAKFFHAKSGVMIDKAKLNPDGSMGLEASM 219
            D+L+DD++ KR LK+K  TP+G++ TS+ E  +KG+ A L AK+ H  SG+ +DK +   DG +  EAS+
Sbjct:   12 DLLNDDFTYKRKLKIKLPTPDGVTWTSEGELSSKGVMAKLAAKYKHP-SGISLDKLEFKSDGRVLGEASL 80
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig82541.15906.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
D8LG27_ECTSI1.230e-3677.91Voltage dependent anion channel n=1 Tax=Ectocarpus... [more]
A0A6H5L9E4_9PHAE6.490e-2776.47Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A835YRG3_9STRA8.390e-1847.62Voltage dependent anion channel n=1 Tax=Tribonema ... [more]
A0A835YZM2_9STRA4.960e-1343.18Voltage dependent anion channel n=1 Tax=Tribonema ... [more]
W7U0F0_9STRA2.770e-943.28Voltage-dependent anion-selective channel n=2 Tax=... [more]
W7U446_9STRA4.610e-744.29Voltage-dependent anion-selective channel protein ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig82541contigH-elongata_contig82541:1231..2773 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score136.3
Seed ortholog evalue6.5e-30
Seed eggNOG ortholog2880.D8LG27
KEGG koko:K15040
KEGG TC1.B.8.1
KEGG Pathwayko04020,ko04022,ko04216,ko04217,ko04218,ko04621,ko04979,ko05012,ko05016,ko05166,map04020,map04022,map04216,map04217,map04218,map04621,map04979,map05012,map05016,map05166
EggNOG free text desc.Eukaryotic porin
EggNOG OGs2D161@1,2SGUK@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko02000,ko03029
Hectar predicted targeting categoryother localisation
Exons2
Model size258
Cds size258
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931232.3663037-CDS-H-elongata_contig82541:1230..14101622931232.3663037-CDS-H-elongata_contig82541:1230..1410Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig82541 1231..1410 +
1691679752.4031568-CDS-H-elongata_contig82541:1230..14101691679752.4031568-CDS-H-elongata_contig82541:1230..1410Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig82541 1231..1410 +
1622931232.38157-CDS-H-elongata_contig82541:2695..27731622931232.38157-CDS-H-elongata_contig82541:2695..2773Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig82541 2696..2773 +
1691679752.4168682-CDS-H-elongata_contig82541:2695..27731691679752.4168682-CDS-H-elongata_contig82541:2695..2773Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig82541 2696..2773 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig82541.15906.1prot_H-elongata_contig82541.15906.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig82541 1231..2773 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig82541.15906.1

>prot_H-elongata_contig82541.15906.1 ID=prot_H-elongata_contig82541.15906.1|Name=mRNA_H-elongata_contig82541.15906.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=86bp
RVPPDILSDDYSLKRTLKMKHTTPEGLSVTSKSEHNKGMAAALEAKFFHA
KSGVMIDKAKLNPDGSMGLEASMKGVAKDVRLLAKV
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mRNA from alignment at H-elongata_contig82541:1231..2773+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig82541.15906.1 ID=mRNA_H-elongata_contig82541.15906.1|Name=mRNA_H-elongata_contig82541.15906.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1543bp|location=Sequence derived from alignment at H-elongata_contig82541:1231..2773+ (Himanthalia elongata Himel1 dioecious)
CGCGTGCCCCCAGATATCTTGAGTGATGACTACAGCTTGAAGCGGACCCT
TAAGATGAAGCACACGACCCCTGAAGGGTTGTCGGTGACCTCCAAGAGCG
AGCACAACAAGGGGATGGCCGCCGCGCTCGAGGCCAAGTTTTTCCACGCC
AAGTCGGGGGTCATGATTGACAAGGCGAAGGTAAACAGTGGGGGAGGCGG
AGGGAGTTGTCGACGGGAGTACGAGGGACCGTGTTCGAAAAGGCTCCGAT
GAGCAACGGGGGGTGGTTCACACAAAGTGACACTTTGATGAGGTTTTTGT
ACTCTAGGGAAGCGTGTTCACGCCAAGTACGAGTATTAAGGAGGGGGGCT
AAAATTAAATGTCCCCGGCCGAAACATGGTTTTGCCTAGGAAGTGGATAT
ATGGCTTGGGGGGGGGGGGTTCTCTCCCCACAGGAGGGCAAAGAAAATGG
GGCCTTAGGGCAAGCATCCCCCCCCCCCGCCCGATCATCGTCACTTAGAG
GTAAACGCTGTATATGTTCTGAGGTAACCACGGACGGGCGGGAATGGGCA
AGGTAACGTTGATTTAGTATTGGAGGGGGGATTAGTGACATATGTCGTCG
TTTATTGTTGACTCTGTGGGAATAAAAATCTAGAAATAGATAGAGGATAA
AGGGGCGATGGTGACTGGAAGAGGAAAGAGGGGCGGGAACATAATAGAAA
CGTCGGGCCAATGATAGAAGGAGCGAGGGAAGAAAAACAAATAGGGGAGG
AAAAAATCATAGCCCCTCTCCTGTTGCGGCCGTTTAGAACGCTCTCGTGG
TACGGGGGATACGTCGCACCAACCATCCTCTTCTTGGCGGCAGCGATATT
CCACTATTGGCTATTGATAGAGGCATTCTCTGTTATATACCGGGGGGGGG
GGGGGATCTTGGGGGGCTGGTCATCTTCCTTTGGGGGTGTTTGTGGGTGG
TTTTTTTGGTATTACGGGGGGGGGGGGGGGGGAATCTTGGGCGGTGTAGA
TATAGCTAACTGGTGGCTGTAGTATGATGTATAGATGTCGATTTGGTCTA
TTAATTACTAGTATGTGTTTCTTGTACTGTACTGAAGACAGACAGGGCGT
GCTCGGGACATTACTGTTCAAATGTATTTATGTATAAAAATATCTTAAAT
GCTAATACTTTGAATGAAAACGAAATGGATTTTCACATTGAGTCCAATCC
CGCGAGTATTTTTGTCAGCAGCGGCAGTTGGGAAGTTGGGAAAAGTGCGC
ATGGGGGCAGCTGTTCTGGATGATTCGATTTGATTTTATTATTATACTGT
ATAGCGATCGTCGTCCGTACTACAATCCATGTTTTCCTCTGTATATAGCG
ATGTATAGATGAGTGTGTACCGATAAGCGGCATGCGGTGCGAGATATTGA
TAAGTTTTCGGTGTCTCTGGTTTTGGCTTTTCTTCTTCGTCTCTCTCGTG
ATCTTGCTCTCGCAGCTGAACCCGGACGGCAGCATGGGGCTGGAGGCGTC
CATGAAGGGTGTTGCGAAGGACGTCAGGCTCCTCGCAAAGGTG
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Coding sequence (CDS) from alignment at H-elongata_contig82541:1231..2773+

>mRNA_H-elongata_contig82541.15906.1 ID=mRNA_H-elongata_contig82541.15906.1|Name=mRNA_H-elongata_contig82541.15906.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=516bp|location=Sequence derived from alignment at H-elongata_contig82541:1231..2773+ (Himanthalia elongata Himel1 dioecious)
CGCGTGCCCCCAGATATCTTGAGTGATGACTACAGCTTGAAGCGGACCCT
TAAGATGAAGCACACGACCCCTGAAGGGTTGTCGGTGACCTCCAAGAGCG
AGCACAACAAGGGGATGGCCGCCGCGCTCGAGGCCAAGTTTTTCCACGCC
AAGTCGGGGGTCATGATTGACAAGGCGAAGCGCGTGCCCCCAGATATCTT
GAGTGATGACTACAGCTTGAAGCGGACCCTTAAGATGAAGCACACGACCC
CTGAAGGGTTGTCGGTGACCTCCAAGAGCGAGCACAACAAGGGGATGGCC
GCCGCGCTCGAGGCCAAGTTTTTCCACGCCAAGTCGGGGGTCATGATTGA
CAAGGCGAAGCTGAACCCGGACGGCAGCATGGGGCTGGAGGCGTCCATGA
AGGGTGTTGCGAAGGACGTCAGGCTCCTCGCAAAGGTGCTGAACCCGGAC
GGCAGCATGGGGCTGGAGGCGTCCATGAAGGGTGTTGCGAAGGACGTCAG
GCTCCTCGCAAAGGTG
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