mRNA_H-elongata_contig82427.15897.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig82427.15897.1
Unique NamemRNA_H-elongata_contig82427.15897.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig82427.15897.1 vs. uniprot
Match: A0A6H5KDP6_9PHAE (Subtilisin n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KDP6_9PHAE)

HSP 1 Score: 102 bits (254), Expect = 8.940e-24
Identity = 48/67 (71.64%), Postives = 57/67 (85.07%), Query Frame = 1 
Query:    7 SSCQVAFSIANASFYSDCECGVVPSVSEGECSVSGYTFQKERDGSTPFAPSFPASSPWVTSVGATQV 207
            S CQ+AF IA  SFYSDC C  VP ++EG C++SGYT+Q E+DG+TPFAPSFPASSPWVTS+GATQV
Sbjct:  574 SECQMAFEIARPSFYSDCACADVPPMTEGSCTLSGYTYQPEKDGATPFAPSFPASSPWVTSIGATQV 640
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BLAST of mRNA_H-elongata_contig82427.15897.1 vs. uniprot
Match: A0A835Z7S3_9STRA (Subtilisin n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z7S3_9STRA)

HSP 1 Score: 63.2 bits (152), Expect = 5.740e-10
Identity = 35/74 (47.30%), Postives = 44/74 (59.46%), Query Frame = 1 
Query:   13 CQVAFSIANASFYSDCECGVVPSVSEGECSVSGYT---------FQKERDGSTPFAPSFPASSPWVTSVGATQV 207
            C +A      + YS+C C  +P VS+G+CS  GY          F K    S PFAP+FPASSPWVT+VGATQ+
Sbjct:  485 CHIAIDPVREALYSECTCDQIPVVSQGKCSFRGYVVGDVTAKTAFGKPTPAS-PFAPNFPASSPWVTAVGATQI 557
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig82427.15897.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KDP6_9PHAE8.940e-2471.64Subtilisin n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A... [more]
A0A835Z7S3_9STRA5.740e-1047.30Subtilisin n=1 Tax=Tribonema minus TaxID=303371 Re... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig82427contigH-elongata_contig82427:1961..2170 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score110.9
Seed ortholog evalue2.4e-22
Seed eggNOG ortholog2880.D7G3S6
EggNOG free text desc.Pro-kumamolisin, activation domain
EggNOG OGs2C2GH@1,2S2RS@2759
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons1
Model size210
Cds size210
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931230.7778025-CDS-H-elongata_contig82427:1960..21701622931230.7778025-CDS-H-elongata_contig82427:1960..2170Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig82427 1961..2170 -
1691679751.7411158-CDS-H-elongata_contig82427:1960..21701691679751.7411158-CDS-H-elongata_contig82427:1960..2170Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig82427 1961..2170 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig82427.15897.1prot_H-elongata_contig82427.15897.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig82427 1961..2170 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig82427.15897.1

>prot_H-elongata_contig82427.15897.1 ID=prot_H-elongata_contig82427.15897.1|Name=mRNA_H-elongata_contig82427.15897.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=70bp
SSSSCQVAFSIANASFYSDCECGVVPSVSEGECSVSGYTFQKERDGSTPF
APSFPASSPWVTSVGATQVS
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mRNA from alignment at H-elongata_contig82427:1961..2170-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig82427.15897.1 ID=mRNA_H-elongata_contig82427.15897.1|Name=mRNA_H-elongata_contig82427.15897.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=210bp|location=Sequence derived from alignment at H-elongata_contig82427:1961..2170- (Himanthalia elongata Himel1 dioecious)
TCCTCTTCCTCATGTCAGGTGGCGTTTTCCATCGCGAACGCCTCATTCTA
CAGTGACTGCGAGTGCGGCGTCGTCCCTTCCGTGTCCGAGGGCGAGTGCT
CCGTGTCGGGCTACACGTTCCAGAAGGAGCGGGACGGTTCGACGCCCTTC
GCCCCCAGCTTTCCGGCCAGCAGTCCGTGGGTGACGTCCGTCGGGGCGAC
CCAGGTGAGC
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Coding sequence (CDS) from alignment at H-elongata_contig82427:1961..2170-

>mRNA_H-elongata_contig82427.15897.1 ID=mRNA_H-elongata_contig82427.15897.1|Name=mRNA_H-elongata_contig82427.15897.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=420bp|location=Sequence derived from alignment at H-elongata_contig82427:1961..2170- (Himanthalia elongata Himel1 dioecious)
TCCTCTTCCTCATGTCAGGTGGCGTTTTCCATCGCGAACGCCTCATTCTA
CAGTGACTGCGAGTGCGGCGTCGTCCCTTCCGTGTCCGAGGGCGAGTGCT
CCGTGTCGGGCTACACGTTCCAGAAGGAGCGGGACGGTTCGACGCCCTTC
GCCCCCAGCTTTCCGGCCAGCAGTCCGTGGGTGACGTCCGTCGGGGCGAC
CCAGGTGAGCTCCTCTTCCTCATGTCAGGTGGCGTTTTCCATCGCGAACG
CCTCATTCTACAGTGACTGCGAGTGCGGCGTCGTCCCTTCCGTGTCCGAG
GGCGAGTGCTCCGTGTCGGGCTACACGTTCCAGAAGGAGCGGGACGGTTC
GACGCCCTTCGCCCCCAGCTTTCCGGCCAGCAGTCCGTGGGTGACGTCCG
TCGGGGCGACCCAGGTGAGC
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