mRNA_H-elongata_contig82402.15895.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig82402.15895.1
Unique NamemRNA_H-elongata_contig82402.15895.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig82402.15895.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig82402contigH-elongata_contig82402:1763..2195 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal anchor
Exons2
Model size157
Cds size153
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931230.6624513-CDS-H-elongata_contig82402:1762..18391622931230.6624513-CDS-H-elongata_contig82402:1762..1839Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig82402 1763..1839 +
1691679751.6883988-CDS-H-elongata_contig82402:1762..18391691679751.6883988-CDS-H-elongata_contig82402:1762..1839Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig82402 1763..1839 +
1622931230.677813-CDS-H-elongata_contig82402:2117..21931622931230.677813-CDS-H-elongata_contig82402:2117..2193Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig82402 2118..2193 +
1691679751.702136-CDS-H-elongata_contig82402:2117..21931691679751.702136-CDS-H-elongata_contig82402:2117..2193Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig82402 2118..2193 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig82402.15895.1prot_H-elongata_contig82402.15895.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig82402 1763..2193 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig82402.15895.1

>prot_H-elongata_contig82402.15895.1 ID=prot_H-elongata_contig82402.15895.1|Name=mRNA_H-elongata_contig82402.15895.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=51bp
NRAGERGGRDRSGIRNANALGRCAERLNLVHTPGILSILSFSATVAIFIV
N
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mRNA from alignment at H-elongata_contig82402:1763..2195+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig82402.15895.1 ID=mRNA_H-elongata_contig82402.15895.1|Name=mRNA_H-elongata_contig82402.15895.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=433bp|location=Sequence derived from alignment at H-elongata_contig82402:1763..2195+ (Himanthalia elongata Himel1 dioecious)
AACCGAGCTGGGGAAAGAGGGGGACGGGACCGTAGCGGCATTCGAAACGC
CAACGCTCTAGGGCGTTGCGCCGAGAGGTGGGGAGAGTTGTATCGGTAGT
CTGGCGCGGTTGCGTAAGCAACGCGAGTAGGATATGCCAACCCAACGTCT
CCAGAGATAGCTCTCCATAAGGGAGTATTCGCAAACCGACGTGGCGCCCC
CTTACGTGTCATGCCGGTTTGCGCGGTTTAATGCAAATTATTGATAAAAA
GGGAAAATATTTTTCCCCTGTCCCCTTTCGCACCTGAGATTTTGGTCTCG
CGAGACGAGTTCAGCAGTCCCATCCCGCGTCAACCTGCTAATTCTCTCAA
CGCAGGCTGAATCTGGTGCATACTCCCGGGATCCTTTCGATCCTCTCGTT
TTCGGCGACGGTGGCCATCTTTATCGTCAACCG
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Coding sequence (CDS) from alignment at H-elongata_contig82402:1763..2195+

>mRNA_H-elongata_contig82402.15895.1 ID=mRNA_H-elongata_contig82402.15895.1|Name=mRNA_H-elongata_contig82402.15895.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=306bp|location=Sequence derived from alignment at H-elongata_contig82402:1763..2195+ (Himanthalia elongata Himel1 dioecious)
AACCGAGCTGGGGAAAGAGGGGGACGGGACCGTAGCGGCATTCGAAACGC
CAACGCTCTAGGGCGTTGCGCCGAGAGAACCGAGCTGGGGAAAGAGGGGG
ACGGGACCGTAGCGGCATTCGAAACGCCAACGCTCTAGGGCGTTGCGCCG
AGAGGCTGAATCTGGTGCATACTCCCGGGATCCTTTCGATCCTCTCGTTT
TCGGCGACGGTGGCCATCTTTATCGTCAACGCTGAATCTGGTGCATACTC
CCGGGATCCTTTCGATCCTCTCGTTTTCGGCGACGGTGGCCATCTTTATC
GTCAAC
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