mRNA_H-elongata_contig8239.15894.1 (mRNA) Himanthalia elongata Himel1 dioecious
|
Overview
Homology
BLAST of mRNA_H-elongata_contig8239.15894.1 vs. uniprot
Match: A0A6H5JWF7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JWF7_9PHAE) HSP 1 Score: 440 bits (1131), Expect = 6.700e-141 Identity = 335/788 (42.51%), Postives = 407/788 (51.65%), Query Frame = 3
Query: 27 IMDQGNGKQGISRQGPLRSITTPPFAGRATLRNSGPLAPALRDSSSNSSVGSGATTDTQTAPYQHGVPPSLSQPLTYQQQPPI----QAVFPYSSPNLAAVADMSSIGQQPTSRSEAPAFTLTPAPTSSDPLSDLLL--SGVHTGRNAPNDRLSNHDSFHRASNSEFNSRSFPVAQTQAPPFAPEPTPPAWIASVSGDGGTVVGRDHDGSRAAAPPTPSSSQPMPALPXXPTNYAG----------------SSFATSAKHYHPQQLPRAIPPPVVTRP------------------------FPPTTPPAPVKAAFRTPPASPQEKSLDQLVSEFLTVSAPPAPEPADQNLHLSDPNGWVAALGQLARRRAWAYIVDVAGKMLETHRRGGALGLTAEQVMTLRLRRASGMLRIGKIEEAAEAASEAARGNGHPPLSTVSIAARFVAASAKSMLSGVAEEEAIDELTALKLELKSVMDSG-----VVPPFSNETIEGATVSM----------------VAAAVWRQRVITSLTNAFVRRGSWRQALGLLETMGEE---------CASSTYAGKRNARDVTGKEQTADGALPDGAAEIAGNALVAAARVDVLTRIGRVFLQFGALEDAEVYFRRAENTAVEPAHDPRILVNNGLLLFSKNDFVAAQESFQRAAAAAA----QAEPSGQRDDDWLWAYLDEGAGLLDCALNNLSLALVYSCDVIGAVQTLEGLIRKDPCLYMLDVVVFNLCTLYDLSFDPVASAKKKRTLQAVAQRFRLEDIDATSFRLS 2150
+ ++ + KQGISR+GPLRSI +PPFAG NSGPLA D+S+ S GA TA + S PL Y Q + Q P SP ++ + PT+ + + T +S++PLS LLL +G+ R+AP S + F PP T D +A PMPALPXX S A S LP IPPP + +PP P PQEK+LD LV EFL+ APP PEP ++ L L DP+GWVAALGQLA RRAW +V++AG ML HR GGA GLTA+Q M LRLRRA GML++G+ EAAEAA G AEEEA+DELT LK EL+ V+ +G + P S + +E T A WR+RV+ +L N FV RG+WR ALGLLE +GE+ C+SS++ DVTG A E A V RV++L+RIGRVFLQFG+LEDAEVYFRRAE A +PRILVN GLL FS+N+FVAAQE+F+ AA AA + EP DD+WLWA LD+GAGLLD ALNNLSLA+VYSCDV+ V+TLEGLIRKDP LYMLDVV+FNLCTLYDLSFD VASAKKKRTLQAVAQRFRLEDID +SFR+S
Sbjct: 1 MNEEDDSKQGISREGPLRSIASPPFAGPVAHVNSGPLAHNHADNSAALSSHPGAPPPAATAAS------AASHPLDYDSQVHLPQQQQQRLPLQSPPRGPLSGGIPLPVAPTAAPISSSST-----SSNNPLSHLLLRPNGMRMERDAP-------------PASXXXXXXXXATEPATAKFDFSGNPPXXXXXXXXXXXTAGPEVSDSPKAP---------PMPALPXXXXXXXXXXXXXXXXXXXXXXXRSQPAPSPATLSGVALP-CIPPPQLPXXXXXXXXXXXXXXXXXXXXXXXXXXYPPRQP--------------PQEKTLDALVLEFLSTEAPPPPEPVNETLALGDPDGWVAALGQLAWRRAWRKLVEIAGTMLVAHRGGGAPGLTADQAMDLRLRRAMGMLKLGRAAEAAEAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGEAEEEALDELTVLKFELEGVIAAGDGPSALAPSPSEDGMEATTXXXXXXXXXXXXXXXXXXXAEATTWRRRVMLNLVNMFVARGNWRMALGLLEDLGEDQCGERSTPACSSSSH------EDVTGA-----------AREEGARAPVDDLRVELLSRIGRVFLQFGSLEDAEVYFRRAEAAAAAVGSNPRILVNRGLLNFSRNEFVAAQENFRNAATEAAMLAAKEEPPDDSDDNWLWATLDQGAGLLDTALNNLSLAMVYSCDVLRGVRTLEGLIRKDPRLYMLDVVIFNLCTLYDLSFDAVASAKKKRTLQAVAQRFRLEDIDPSSFRMS 723
BLAST of mRNA_H-elongata_contig8239.15894.1 vs. uniprot
Match: D8LLE2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LLE2_ECTSI) HSP 1 Score: 343 bits (879), Expect = 1.160e-108 Identity = 211/420 (50.24%), Postives = 244/420 (58.10%), Query Frame = 3
Query: 903 VSAPPAPEPADQNLHLSDPNGWVAALGQLARRRAWAYIVDVAGKMLETHRRGGALGLTAEQVMTLRLRRASGMLRIGKIEEAAEAASEAARGNGHPPLSTVSIAARFVAASAKSMLSGVAEEEAIDELTALKLELKSVMDSGVVPPFSNETIEGATVSMVAAAVWRQRVITSLTNAFVRRGSWRQALGLLETMGEECASSTYAGKRNARDVTGKEQTADGALPDGAAEIAGNALVAAARVDVLTRIGRVFLQFGALEDAEVYFRRAENTAVEPAHDPRILVNNGLLLFSKNDFVAAQESFQRAAAAAA----QAEPSGQRDDDWLWAYLDEGAGLLDCALNNLSLALVYSCDVIGAVQTLEGLIRKDPCLYMLDVVVFNLCTLYDLSFDPVASAKKKRTLQAVAQRFRLEDIDATSFRLS 2150
+ APP PEP ++ L L DP+GWVAALGQLA RRAW +V++AG ML HR GGA GLTA+Q M LRLRRA GML++G+ EAAEAA G AEEEA+DELTALK+ AAA + S+ N RV++L+RIGRVFLQFG+LEDAEVYFRRAE A +PRILVN GLL FS+N+FVAAQE+F+ AA AA + EP DD+WLWA LD+GAGLLD ALNNLSLA+VYSCDV+ V+TLEGLIRKDP LYMLDVV+FNLCTLYDLSFD VASAKKKRTLQAVAQRFRLEDIDA+SFR+S
Sbjct: 1 MEAPPPPEPVNETLALGDPDGWVAALGQLAWRRAWRKLVEIAGTMLVAHRGGGAPGLTADQAMDLRLRRAMGMLKLGRAAEAAEAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCEGEAEEEALDELTALKV--------------------------TAAAAGEEGARASVDNV--------------------------------------------------------------RVELLSRIGRVFLQFGSLEDAEVYFRRAEAAAAVAGSNPRILVNRGLLDFSRNEFVAAQENFRNAATEAAMLAAKEEPPDGSDDNWLWATLDQGAGLLDAALNNLSLAMVYSCDVLRGVRTLEGLIRKDPRLYMLDVVIFNLCTLYDLSFDAVASAKKKRTLQAVAQRFRLEDIDASSFRMS 332
BLAST of mRNA_H-elongata_contig8239.15894.1 vs. uniprot
Match: A0A6H5KFR3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KFR3_9PHAE) HSP 1 Score: 151 bits (381), Expect = 1.570e-39 Identity = 81/110 (73.64%), Postives = 91/110 (82.73%), Query Frame = 3
Query: 1821 AAQAEPSGQRDDDWLWAYLDEGAGLLDCALNNLSLALVYSCDVIGAVQTLEGLIRKDPCLYMLDVVVFNLCTLYDLSFDPVASAKKKRTLQAVAQRFRLEDIDATSFRLS 2150
AA+ EP DD WL A LD+GAGLLD AL NLSLA+ SCDV+ V+TL+GLIRK+P LYMLDVV+FNLCTLYDLSFD VASAKK RTLQAV QRFRLEDID +SFR+S
Sbjct: 3 AAEEEPPDGSDDIWLRATLDQGAGLLDSALTNLSLAMC-SCDVLRGVRTLKGLIRKNPRLYMLDVVIFNLCTLYDLSFDAVASAKK-RTLQAVTQRFRLEDIDTSSFRMS 110
BLAST of mRNA_H-elongata_contig8239.15894.1 vs. uniprot
Match: A0A836CFY7_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CFY7_9STRA) HSP 1 Score: 134 bits (338), Expect = 6.150e-30 Identity = 124/424 (29.25%), Postives = 177/424 (41.75%), Query Frame = 3
Query: 969 VAALGQLARRRAWAYIVDVAGKMLETHRRGGALGLTAEQVMTLRLRRASGMLRIGKIEEAAEAASEAARGNGHPPLSTVSIAARFVAASAKSMLSGVAEEEAIDELTALKLELKSVMDSGVVPPFSNETIEGAT-----------VSMVAAAVWRQRVITSLTNAFVRRGSWRQALGLLETMGEECASSTYAGKRNARDVTGKEQTADGALPDGAAEIAGNALVAAARVDVLTRIGRVFLQFGALEDAEVYFRRAEN-----------TAVEPAHDPRILVNNGLLLFSKNDFVAAQESFQRAAAAAAQAEPSGQ---------RDDDWLWAYLDEGAGLLDCALNNLSLALVYSCDVIGAVQTLEGLIRKDPCLYMLDVVVFNLCTLYDLSFDPVASAKKKRTLQAVAQRFRLEDIDATSFRL 2147
V+ L A RAW + A E GAL + +R+ RA+ +LR+ +++A R + + AA +A ++ ++AI L LK L + + + P T G T ++ A WR+RV T+L +AF G WR AL L+ ++ +G AAR +V +RIGRVFLQ G + A ++ RAE A H + L+N GLL F+++DF A E +RAAA A A LL A +N +LA +Y+CDV A+ EG R+DP + D FNLCTLYDL P SA +K L A+AQRF L+D+D SFR+
Sbjct: 78 VSCLLVFAEMRAWRSVAAAA----EALPASGAL--SPSDAADVRMCRATALLRMRHVDDAQAELQRVQRASA-AAATPAPFAAELLALQIGLFKGTLSSDDAIASLGTLKRALDARIAAAAASP---ATESGYTXXXXXXXXXXXLTAQEAVRWRRRVRTTLASAFQVMGRWRAALAELQANDDDLRGVLASGXXXXXXXXXXXXX-----------------XLAARGEVNSRIGRVFLQIGDVHSATTFYNRAERMWAAAGSSGAGAADAALHRAQALINAGLLAFARSDFRGAAERHERAAAEARTARTLAAGXXXXXXXXXXXXXXXVEXXXXXALLAAAASNAALAHLYACDVARALAAAEGAAREDPAAALRDTTAFNLCTLYDLGGGPAGSATRKAALAALAQRFSLDDVDVGSFRM 474
BLAST of mRNA_H-elongata_contig8239.15894.1 vs. uniprot
Match: A0A7S2K5V8_9STRA (Hypothetical protein n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2K5V8_9STRA) HSP 1 Score: 109 bits (273), Expect = 3.220e-23 Identity = 76/241 (31.54%), Postives = 128/241 (53.11%), Query Frame = 3
Query: 1500 STYAGKRNARDVTGKEQTADGALPDGAAEIAGNALVAAARVDVLTRIGRVFLQFGALEDAEVYFRRAEN------TAVEPAHDP------------------RILVNNGLLLFSKNDFVAAQESFQRAAAAAAQAEPSGQRDDDW--LWAYLDEGAGLLDCALNNLSLALVYSCDVIGAVQTLEGLIRKDPCLYMLDVVVFNLCTLYDLSFDPVASAKKKRTLQAVAQRFRLEDIDATSFR 2144
S AG + A + G ++ +GA+ D A +AL+AA+R+++L+R GR+ +Q GAL +A F+ A++ +A+ A+ +++VN G+LLF+ ++ A + F RA A + E Q L +L L+ ALNN++L +Y+C + A+ +E L+R++P Y+ + FNLCT+Y+L D ++KR LQ +A+RF L D+ SFR
Sbjct: 9 SALAGAKGALETFGADE--NGAVADVANGHFCSALLAASRIEILSRQGRMLMQTGALTEASTVFQYAQDEIPPILSALNAANKSSVIRNILSGVTIIHQAPKQLIVNEGILLFADGEYALAMDKF-RAVMEAQRQESKLQTHGTTGHLENWLTVNDSLIPPALNNMALCALYTCQLEKAISLMESLVRENPSRYLTQELAFNLCTMYELGSD--VGGRRKRVLQLIAKRFSLHDVPQASFR 244
BLAST of mRNA_H-elongata_contig8239.15894.1 vs. uniprot
Match: A0A024G727_9STRA (Uncharacterized protein n=1 Tax=Albugo candida TaxID=65357 RepID=A0A024G727_9STRA) HSP 1 Score: 114 bits (286), Expect = 1.220e-22 Identity = 71/190 (37.37%), Postives = 109/190 (57.37%), Query Frame = 3
Query: 1617 RVDVLTRIGRVFLQFGALEDAEVYFR-------RAENTAVEPAHDPRILVNNGLLLFSKNDFVAAQESFQRAAAAAAQAEPSGQRDDDWLWAYLD------EGAGLLDCALNNLSLALVYSCDVIGAVQTLEGLIRKDPCLYMLDVVVFNLCTLYDLSFDPVASAKKKRTLQAVAQRFRLEDIDATSFRL 2147
++ VL+RIGR+++Q G +E AE+ F+ + + +P H P++L+N GLLL S+++ A +F R+ AE Q +D W L E L+ A+NN ++ +YSCDV GAV LE +IR P ++ +VVVFNL +LYDL +D S +K L+ +A + LE IDA +FR+
Sbjct: 562 QIIVLSRIGRIYMQLGDIESAEILFKHVSVLSEKLSSDEKQPGH-PQVLMNKGLLLLSRDNIQEAIHTF-RSILHLGLAEGKAQ-NDKWSNTILPDEDLMLEQGELICAAVNNYAICALYSCDVHGAVTMLERMIRLCPLRFLNEVVVFNLSSLYDLIYDNANSTNRKEMLKRIADLYNLEHIDAAAFRI 748
BLAST of mRNA_H-elongata_contig8239.15894.1 vs. uniprot
Match: F0WJF3_9STRA (Uncharacterized protein AlNc14C121G6682 n=1 Tax=Albugo laibachii Nc14 TaxID=890382 RepID=F0WJF3_9STRA) HSP 1 Score: 112 bits (281), Expect = 5.150e-22 Identity = 69/186 (37.10%), Postives = 108/186 (58.06%), Query Frame = 3
Query: 1617 RVDVLTRIGRVFLQFGALEDAEVYFRRAENTAVE-PAHD-----PRILVNNGLLLFSKNDFVAAQESFQ---RAAAAAAQAEPSGQRDDDWLWAYLDEGAGLLDCALNNLSLALVYSCDVIGAVQTLEGLIRKDPCLYMLDVVVFNLCTLYDLSFDPVASAKKKRTLQAVAQRFRLEDIDATSFRL 2147
++ VL+RIGR+++Q G +E AE+ F+ + + + P+H ++L+N GLLL S+++ A E F A Q + S ++ L L E L+ A+NN ++ +YSCDV GAV LE +IR P ++ +VVVFNL +LYDL +D S +K L+ +A + LE IDA +FR+
Sbjct: 582 QIAVLSRIGRIYMQLGDIESAEMVFQHVRHLSEKLPSHQNQTLHAQVLMNKGLLLLSRDNVQEAIEIFSSILHLELANGQTKNSQWSNEIVLDDLLLEQEDLICAAVNNYAICALYSCDVHGAVAMLEKMIRLSPVRFLNEVVVFNLSSLYDLIYDNANSTNRKEMLKRIADAYDLEHIDAAAFRI 767
BLAST of mRNA_H-elongata_contig8239.15894.1 vs. uniprot
Match: L8H1C1_ACACA (Tetratricopeptide repeat domain containing protein n=1 Tax=Acanthamoeba castellanii str. Neff TaxID=1257118 RepID=L8H1C1_ACACA) HSP 1 Score: 91.3 bits (225), Expect = 2.190e-15 Identity = 58/176 (32.95%), Postives = 92/176 (52.27%), Query Frame = 3
Query: 1620 VDVLTRIGRVFLQFGALEDAEVYFRRAENTAVEPAHDPRILVNNGLLLFSKNDFVAAQESFQRAAAAAAQAEPSGQRDDDWLWAYLDEGAGLLDCALNNLSLALVYSCDVIGAVQTLEGLIRKDPCLYMLDVVVFNLCTLYDLSFDPVASAKKKRTLQAVAQRFRLEDIDATSFRL 2147
V +L+ +GR+ LQ+G L AE YFR E EP + +++N G+ ++ + A +F+R + EP D+ W A NN ++ +Y D+ ++ +LE LI +P +LDVVVFNLCTLYDL D +S KK+ L A+ +F +D D + ++
Sbjct: 450 VVLLSAVGRLLLQWGNLTGAERYFRDVEQLVTEPTNSVVVMMNRGMEYIGRDRYSDAARAFER----VLELEP----DNVW--------------AANNRAVCWLYLRDLQRSITSLEQLIAANPEANLLDVVVFNLCTLYDLESD--SSGVKKKALLAIISQFASDDFDTSGIKV 601
BLAST of mRNA_H-elongata_contig8239.15894.1 vs. uniprot
Match: A0A3Q3GH96_9LABR (Trafficking protein particle complex 12 n=2 Tax=Labrus bergylta TaxID=56723 RepID=A0A3Q3GH96_9LABR) HSP 1 Score: 78.6 bits (192), Expect = 2.750e-11 Identity = 53/168 (31.55%), Postives = 87/168 (51.79%), Query Frame = 3
Query: 1617 RVDVLTRIGRVFLQFGALEDAEVYFRRAENTAV----EPAHDPRILVNNGLLLFSKNDFVAAQESFQRAAAAAAQAEPSGQRDDDWLWAYLDEGAGLLDCALNNLSLALVYSCDVIGAVQTLEGLIRKDPCLYMLDVVVFNLCTLYDLSFDPVASAKKKRTLQAVAQR 2108
RV +L+ IGR+FLQ G ++ AE YF+ AE + +P H +L+N + S+N++ A SF + +P A NN ++ L+Y + ++ LEGL+++DP LY+ + V+FNL T+Y+L ++ KK+ L+AVA R
Sbjct: 633 RVQLLSGIGRIFLQIGDVKTAERYFQDAEKDCLMKGSQPGHTTCVLMNRAFVYLSQNNYSEAHSSFTE----VLKIDPKNP------------------VANNNAAVCLLYLGRLKESLGQLEGLVQQDPALYLHESVLFNLTTMYELESSR-STQKKQALLEAVASR 777
BLAST of mRNA_H-elongata_contig8239.15894.1 vs. uniprot
Match: A0A5N5N6Q9_PANHP (Uncharacterized protein n=2 Tax=Siluroidei TaxID=1489793 RepID=A0A5N5N6Q9_PANHP) HSP 1 Score: 78.6 bits (192), Expect = 2.760e-11 Identity = 53/168 (31.55%), Postives = 85/168 (50.60%), Query Frame = 3
Query: 1617 RVDVLTRIGRVFLQFGALEDAEVYFRRAENTAVE----PAHDPRILVNNGLLLFSKNDFVAAQESFQRAAAAAAQAEPSGQRDDDWLWAYLDEGAGLLDCALNNLSLALVYSCDVIGAVQTLEGLIRKDPCLYMLDVVVFNLCTLYDLSFDPVASAKKKRTLQAVAQR 2108
RV +L+ IGR+FLQ G + AE YF+ E E P HD IL+N + S+N++ A F + + +P+ A NN ++ L+Y + ++ LE L+++DP LY+ + V+FNL T+Y+L ++ KK+ L+AVA R
Sbjct: 637 RVQLLSGIGRIFLQIGDIRTAEKYFQEVEKAGEEKGKGPTHDTAILMNRAFVYLSQNNYADAHTCFS----SVLKIDPNNP------------------VANNNAAVCLLYLGRLKESLGQLESLVQQDPALYLHESVLFNLTTMYELESSR-STQKKQALLEAVAGR 781 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig8239.15894.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig8239.15894.1 >prot_H-elongata_contig8239.15894.1 ID=prot_H-elongata_contig8239.15894.1|Name=mRNA_H-elongata_contig8239.15894.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=708bp MDQGNGKQGISRQGPLRSITTPPFAGRATLRNSGPLAPALRDSSSNSSVGback to top mRNA from alignment at H-elongata_contig8239:3557..8477- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig8239.15894.1 ID=mRNA_H-elongata_contig8239.15894.1|Name=mRNA_H-elongata_contig8239.15894.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=4921bp|location=Sequence derived from alignment at H-elongata_contig8239:3557..8477- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig8239:3557..8477- >mRNA_H-elongata_contig8239.15894.1 ID=mRNA_H-elongata_contig8239.15894.1|Name=mRNA_H-elongata_contig8239.15894.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=4248bp|location=Sequence derived from alignment at H-elongata_contig8239:3557..8477- (Himanthalia elongata Himel1 dioecious)back to top |