mRNA_H-elongata_contig8239.15893.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig8239.15893.1 vs. uniprot
Match: D8LLE1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LLE1_ECTSI) HSP 1 Score: 243 bits (621), Expect = 5.670e-80 Identity = 106/170 (62.35%), Postives = 136/170 (80.00%), Query Frame = 1
Query: 1 SRVPMSSKPCPCFSGKPYGECCKPFHDGEKQPEPMQAMRARYAAYASAMPQYIMKSTHPEHDDFGKPGWSGELLDFCNNYRFTGLDVGAPEADPEAPSDRVFVYFTALMTGAQRGGAVSFDERSLFVRRD-GQWLYRSADKDYEPSVDVVSKRRFNKTARIDKPKGMPQR 507
++ P +S PCPCFSG PYG+CCKPFHDGEK P+P+Q MRARYAAYA MPQ+IMK+THP+H+DF K GW +L FCNNY+FTGL+VG PE D + P D+V+VYFTA+M GA+ GGAVSFDERS+F+ D G+WLYR+ D +Y+ SV+V+SKR++N A+ D+P G R
Sbjct: 7 NKTPAASAPCPCFSGNPYGDCCKPFHDGEKSPQPVQVMRARYAAYACNMPQFIMKTTHPDHEDFAKSGWRDSILVFCNNYKFTGLEVGQPEVDQDTP-DKVYVYFTAMMAGAKGGGAVSFDERSVFLLTDDGEWLYRAPDANYKESVNVISKRKYNAAAKTDRPSGFSAR 175
BLAST of mRNA_H-elongata_contig8239.15893.1 vs. uniprot
Match: A0A6H5JTH4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JTH4_9PHAE) HSP 1 Score: 246 bits (628), Expect = 7.360e-80 Identity = 108/170 (63.53%), Postives = 137/170 (80.59%), Query Frame = 1
Query: 1 SRVPMSSKPCPCFSGKPYGECCKPFHDGEKQPEPMQAMRARYAAYASAMPQYIMKSTHPEHDDFGKPGWSGELLDFCNNYRFTGLDVGAPEADPEAPSDRVFVYFTALMTGAQRGGAVSFDERSLFVRRD-GQWLYRSADKDYEPSVDVVSKRRFNKTARIDKPKGMPQR 507
++ P +S PCPCFSG PYG+CCKPFHDGEK +P+Q MRARYAAYA MPQ+IMK+THP+H+DFGKPGW +L FCNNY+FTGL+VG PE D + P D+V+VYFTA+M GA+ GGAVSFDERS+FV D G+WLYR+ D +Y+ SV+V+SKR++N A+ D+P G R
Sbjct: 89 TKTPAASAPCPCFSGNPYGDCCKPFHDGEKSAQPVQVMRARYAAYACNMPQFIMKTTHPDHEDFGKPGWRDSILVFCNNYKFTGLEVGQPEEDQDTP-DKVYVYFTAMMAGAKVGGAVSFDERSVFVLTDDGEWLYRAPDANYKESVNVISKRKYNAAAKTDRPSGFSAR 257
BLAST of mRNA_H-elongata_contig8239.15893.1 vs. uniprot
Match: A0A835ZDT4_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZDT4_9STRA) HSP 1 Score: 118 bits (295), Expect = 1.880e-30 Identity = 64/159 (40.25%), Postives = 92/159 (57.86%), Query Frame = 1
Query: 4 RVPM-SSKPCPCFSGKPYGECCKPFHDGEK-QPEPMQAMRARYAAYASAMPQYIMKSTHPEHDDF-------GKPGWSGELLDFCNNYRFTGLDVGAPEADPEAPSDRVFVYFTALMTGAQRGGAVSFDERSLFV-RRDGQWLYRSADKDYEPSVDVVS 450
+VP +S C C SGK Y +CC+ +HDG + P+P+ +R+RY+AYA +P YIM +THP+H+D+ G W LL+FC+ Y F GL GA E + + F+ FTA + + + F ERS F+ DG+WLY S D D+ P V + S
Sbjct: 18 KVPKDASTACVCGSGKAYQDCCRHYHDGTRFAPDPVALLRSRYSAYAYRLPDYIMATTHPDHEDYKPAKDKAGAKAWQQSLLNFCDAYTFQGLQPGALELEDDGAV--AFLNFTAKVNALSQ--RLQFVERSKFLCGGDGRWLYVSGDADFTPEVLLES 172
BLAST of mRNA_H-elongata_contig8239.15893.1 vs. uniprot
Match: A0A6M1Z103_9BACT (Uncharacterized protein n=1 Tax=Chlamydiae bacterium TaxID=2081524 RepID=A0A6M1Z103_9BACT) HSP 1 Score: 113 bits (283), Expect = 3.040e-29 Identity = 60/131 (45.80%), Postives = 76/131 (58.02%), Query Frame = 1
Query: 28 CPCFSGKPYGECCKPFHDGEKQPEPM-QAMRARYAAYASAMPQYIMKSTHPEHDDF--GKPGWSGELLDFCNNYRFTGLDVGAPEADPEAPSDRVFVYFTALMTGAQRGGAVSFDERSLFVRRDGQWLYRS 411
CPC SGK Y CC P H E+ PE Q MR+RY+AYA +P+YIM +THPE+ + + W E+L FC FTGLD+ E D FV F A + Q VSF E+S F++ DG+WLYRS
Sbjct: 3 CPCHSGKSYQACCVPLHRKERLPESAEQLMRSRYSAYALQLPEYIMDTTHPENPTYLEDRSPWQIEILKFCKETTFTGLDI----LSTENRDDEAFVTFFAHLI--QNNLDVSFQEKSRFLKEDGRWLYRS 127
BLAST of mRNA_H-elongata_contig8239.15893.1 vs. uniprot
Match: A0A7Y5NW54_9DELT (Uncharacterized protein n=1 Tax=Polyangiaceae bacterium TaxID=2268199 RepID=A0A7Y5NW54_9DELT) HSP 1 Score: 99.8 bits (247), Expect = 1.060e-23 Identity = 56/140 (40.00%), Postives = 76/140 (54.29%), Query Frame = 1
Query: 4 RVPMSSKPCPCFSGKPYGECCKPFHDGEKQ-PEPMQAMRARYAAYASAMPQYIMKSTHPEHDDFGKPGWSGELLDF-----CNNYRFTGLDVGAPEADPEAPSDRVFVYFTALMTGAQRGGAVSFDERSLFVRRDGQWLY 405
R P + CPC SGKPYGECC+P+H ++ P+P MR+RY+A+A Y++ + HPEH + K E+L C ++R+TGL + D DR V F A + QRG +SF ERS F R G W Y
Sbjct: 5 RAPKRTSACPCQSGKPYGECCRPYHRRTQEAPDPEALMRSRYSAFAIGEIDYLVATLHPEHAE--KKNLPEEMLRSSLRAACRDHRYTGLTILETSVD----GDRGMVRFVAKVF--QRGKDISFSERSTFERVGGAWRY 136
BLAST of mRNA_H-elongata_contig8239.15893.1 vs. uniprot
Match: A0A7V9UIY6_9BACT (Uncharacterized protein n=1 Tax=Parachlamydiaceae bacterium TaxID=2052176 RepID=A0A7V9UIY6_9BACT) HSP 1 Score: 99.4 bits (246), Expect = 1.170e-23 Identity = 51/131 (38.93%), Postives = 74/131 (56.49%), Query Frame = 1
Query: 28 CPCFSGKPYGECCKPFHDGEKQPEPMQAMRARYAAYASAMPQYIMKSTHPEHDD--FGKPGWSGELLDFCNNYRFTGLDVGAPEADPEAPSDRVFVYFTALMTGAQRGGAVSFDERSLFVRRDGQWLYRSA 414
CPC S K Y ECC+ HDG + MR+RY+AYA ++P+YIM++THP+H D K W ++LDF +F LD+ + + +D FV F A ++ Q + E+S F++ QWLYR A
Sbjct: 5 CPCCSKKIYQECCQLMHDGAFPENALALMRSRYSAYALSLPEYIMRTTHPDHGDRLLNKEEWKMKILDFSRTTQFHRLDI----VNFQDGADEAFVTFIAHLS--QEKQPMQLHEKSRFLKIGSQWLYRDA 129
BLAST of mRNA_H-elongata_contig8239.15893.1 vs. uniprot
Match: A0A2H0VN27_9BACT (Uncharacterized protein n=1 Tax=Chlamydiae bacterium CG10_big_fil_rev_8_21_14_0_10_35_9 TaxID=1973935 RepID=A0A2H0VN27_9BACT) HSP 1 Score: 98.6 bits (244), Expect = 3.000e-23 Identity = 52/129 (40.31%), Postives = 71/129 (55.04%), Query Frame = 1
Query: 28 CPCFSGKPYGECCKPFHDGEKQPEPMQAMRARYAAYASAMPQYIMKSTHPE--HDDFGKPGWSGELLDFCNNYRFTGLDVGAPEADPEAPSDRVFVYFTALMTGAQRGGAVSFDERSLFVRRDGQWLYR 408
CPC SG Y +CC+PFH G+ P P +RARYAAYA +P +I+ +THPE + + K W +L +F + F L + D E F+ F A + Q +F ERS FVR +G+WLYR
Sbjct: 3 CPCHSGNDYKDCCEPFHKGKLPPTPTILLRARYAAYALNLPDFIIDTTHPECFYYEKDKDKWKKDLEEFSTSTIFKDLRILDTHEDEELG----FITFVAFIK--QGDEDATFTERSYFVREEGKWLYR 125
BLAST of mRNA_H-elongata_contig8239.15893.1 vs. uniprot
Match: M1VH01_CYAM1 (Uncharacterized protein n=1 Tax=Cyanidioschyzon merolae (strain NIES-3377 / 10D) TaxID=280699 RepID=M1VH01_CYAM1) HSP 1 Score: 97.1 bits (240), Expect = 1.240e-21 Identity = 55/142 (38.73%), Postives = 83/142 (58.45%), Query Frame = 1
Query: 4 RVPMSSK-PCPCFSGKPYGECCKPFHDGEKQP-EPMQAMRARYAAYASAMPQYIMKST---HPEH-DDFGKPGWSGELLDFCNNYRFTGLDVGAPEADPEAPSDRVFVYFTALMTGAQRGGAVSFDERSLFVRRDGQWLYRS 411
RVP + + PC C SG+ Y CC PFH K P E + +RARY+A+A +P +IM++T +P++ DD+ + W ++L+FC+ YRF G++V + A D F+ F A + G F ERS FV+ G+W+Y S
Sbjct: 95 RVPQNPEIPCACGSGRTYRNCCMPFHTNSKAPAEAEELLRARYSAFAYRLPGFIMRTTSKTNPDYTDDWNR--WEADILEFCDLYRFPGMEV---LDEKTASPDVSFIQFRANLI--YEGALGFFIERSRFVKERGKWMYAS 229
BLAST of mRNA_H-elongata_contig8239.15893.1 vs. uniprot
Match: A0A7S0HEU9_9EUKA (Hypothetical protein n=1 Tax=Phaeocystis antarctica TaxID=33657 RepID=A0A7S0HEU9_9EUKA) HSP 1 Score: 93.2 bits (230), Expect = 6.810e-20 Identity = 53/155 (34.19%), Postives = 79/155 (50.97%), Query Frame = 1
Query: 4 RVPMSSKPCPCFSGKPYGECCKPFHDGEKQPEPMQAMRARYAAYASAMPQYIMKSTHPEHDDF--GKPGWSGELLDFCNNYRFTGLDVGAPEADPEAP---SDRVFVYFTALMTGAQRGGAVSFD--ERSLFVR-RDGQWLYRSADKDYEPSVDV 444
R P C C S + Y CC+P H+ EP+ +RARY AYA +P +++ +T P+H+++ + W +LL FC+ + GL+VG +A A +D V V F A + Q+G D E S VR G WLY D +YE + +
Sbjct: 114 RRPAKGVACACGSAQSYEACCQPCHEAGLATEPLALIRARYTAYAYRLPDFLIDTTSPDHEEWETDRTAWKKDLLTFCDTFVCEGLEVGQQQAGDAAAVGGADAVQVPFRAKLV--QKGAIKMLDLLETSTLVRGAAGGWLYAKGDVEYEATPEA 266
BLAST of mRNA_H-elongata_contig8239.15893.1 vs. uniprot
Match: A0A3S4VK87_ACTVI (UPF0225 protein E4J66_10125 n=2 Tax=Actinomyces TaxID=1654 RepID=A0A3S4VK87_ACTVI) HSP 1 Score: 88.6 bits (218), Expect = 3.040e-19 Identity = 48/137 (35.04%), Postives = 66/137 (48.18%), Query Frame = 1
Query: 16 SSKPCPCFSGKPYGECCKPFHDGEKQPEPMQAMRARYAAYASAMPQYIMKSTHPEHDDFGKPGWSGELLDFCN-NYRFTGLDVGAPEADPEAPSDRVFVYFTALMTGAQRGGAVS--FDERSLFVRRDGQWLYRSAD 417
++ PCPC SG+ YG+CC+P HDG P MR+RY A+ Y+ ++ HP G +C+ R+TGL + + + A TG RGG V+ ERS F RR G+WLY AD
Sbjct: 23 TAAPCPCGSGRTYGQCCEPLHDGAPAPTAEALMRSRYTAFVVGDEDYLFRTWHPRTRPEGP---------YCHPGTRWTGLTIHETAGGGTDDETGIVEFTAAYRTGDGRGGVVADALRERSRFTRRAGRWLYLDAD 150 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig8239.15893.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig8239.15893.1 >prot_H-elongata_contig8239.15893.1 ID=prot_H-elongata_contig8239.15893.1|Name=mRNA_H-elongata_contig8239.15893.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=166bp MSSKPCPCFSGKPYGECCKPFHDGEKQPEPMQAMRARYAAYASAMPQYIMback to top mRNA from alignment at H-elongata_contig8239:1330..2720+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig8239.15893.1 ID=mRNA_H-elongata_contig8239.15893.1|Name=mRNA_H-elongata_contig8239.15893.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1391bp|location=Sequence derived from alignment at H-elongata_contig8239:1330..2720+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig8239:1330..2720+ >mRNA_H-elongata_contig8239.15893.1 ID=mRNA_H-elongata_contig8239.15893.1|Name=mRNA_H-elongata_contig8239.15893.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=996bp|location=Sequence derived from alignment at H-elongata_contig8239:1330..2720+ (Himanthalia elongata Himel1 dioecious)back to top |