mRNA_H-elongata_contig82387.15892.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig82387.15892.1
Unique NamemRNA_H-elongata_contig82387.15892.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig82387.15892.1 vs. uniprot
Match: D8LEK5_ECTSI (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LEK5_ECTSI)

HSP 1 Score: 154 bits (388), Expect = 5.370e-42
Identity = 99/169 (58.58%), Postives = 115/169 (68.05%), Query Frame = 1 
Query:   19 AQVAGAGEGVG-EESIGRAEASDLLSYVVDVSVTMGSLLQASCFLSAADDVKSGDDGDGSSQQRVSSGVATLAPRLQGTDGEVSPEGLAAALALTFEATLPALQGLLLLRTKSDQVGAMSSSMENRRRLSIARQWLLRCLHGLLGPVFLHPLGLQEASATAEGRGGGVG 522
            A++AGA +G+G    I   EASD+LSYV DV+V++GSLLQAS  + A      G  G          G+  LA RLQG+DGEVSPEGLAAALALTFEATLPAL+G LL  T S +VGA  S    R R  +ARQWLLRCLHGL+GPVFL PLGLQEAS +  G G G G
Sbjct:   89 AKMAGAQDGLGLGPPIDHTEASDVLSYVTDVAVSVGSLLQASSGVRAV-----GSSGXXXXXXXXX-GIGLLAQRLQGSDGEVSPEGLAAALALTFEATLPALEGFLLAPTSSGKVGAPDSESV-RARGRVARQWLLRCLHGLIGPVFLQPLGLQEASPSVAGSGDGDG 250
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BLAST of mRNA_H-elongata_contig82387.15892.1 vs. uniprot
Match: A0A6H5L6J2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L6J2_9PHAE)

HSP 1 Score: 155 bits (391), Expect = 8.020e-41
Identity = 100/169 (59.17%), Postives = 116/169 (68.64%), Query Frame = 1 
Query:   19 AQVAGAGEGVG-EESIGRAEASDLLSYVVDVSVTMGSLLQASCFLSAADDVKSGDDGDGSSQQRVSSGVATLAPRLQGTDGEVSPEGLAAALALTFEATLPALQGLLLLRTKSDQVGAMSSSMENRRRLSIARQWLLRCLHGLLGPVFLHPLGLQEASATAEGRGGGVG 522
            A++AGA +G+G    I   EASD+LSYV DV+V++GSLLQASC + A   V SG  G          G+  LA RLQG+DGEVSPEGLAAALALTFEATLPAL+  LL  T S +VGA  S    R R  +ARQWLLRCLHGL+GPVFL PLGLQEAS +  G   G G
Sbjct:   36 AKMAGAQDGLGLGPPIDHTEASDVLSYVTDVAVSVGSLLQASCGVRA---VGSGAGG----------GIGLLAQRLQGSDGEVSPEGLAAALALTFEATLPALESFLLAPTSSGKVGAPDSESV-RARGRVARQWLLRCLHGLIGPVFLQPLGLQEASPSVAGSWDGDG 190
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig82387.15892.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LEK5_ECTSI5.370e-4258.58Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A6H5L6J2_9PHAE8.020e-4159.17Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig82387contigH-elongata_contig82387:244..2326 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-23_002690.1
Exons2
Model size555
Cds size555
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931230.2803829-CDS-H-elongata_contig82387:243..4191622931230.2803829-CDS-H-elongata_contig82387:243..419Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig82387 244..419 -
1691679751.4775398-CDS-H-elongata_contig82387:243..4191691679751.4775398-CDS-H-elongata_contig82387:243..419Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig82387 244..419 -
1622931230.2936625-CDS-H-elongata_contig82387:1947..23261622931230.2936625-CDS-H-elongata_contig82387:1947..2326Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig82387 1948..2326 -
1691679751.4879432-CDS-H-elongata_contig82387:1947..23261691679751.4879432-CDS-H-elongata_contig82387:1947..2326Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig82387 1948..2326 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig82387.15892.1prot_H-elongata_contig82387.15892.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig82387 244..2326 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig82387.15892.1

>prot_H-elongata_contig82387.15892.1 ID=prot_H-elongata_contig82387.15892.1|Name=mRNA_H-elongata_contig82387.15892.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=185bp
ASVRARAQVAGAGEGVGEESIGRAEASDLLSYVVDVSVTMGSLLQASCFL
SAADDVKSGDDGDGSSQQRVSSGVATLAPRLQGTDGEVSPEGLAAALALT
FEATLPALQGLLLLRTKSDQVGAMSSSMENRRRLSIARQWLLRCLHGLLG
PVFLHPLGLQEASATAEGRGGGVGSTARSEAAGE*
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mRNA from alignment at H-elongata_contig82387:244..2326-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig82387.15892.1 ID=mRNA_H-elongata_contig82387.15892.1|Name=mRNA_H-elongata_contig82387.15892.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=2083bp|location=Sequence derived from alignment at H-elongata_contig82387:244..2326- (Himanthalia elongata Himel1 dioecious)
GCCTCTGTACGCGCGCGCGCACAGGTTGCTGGCGCGGGCGAGGGCGTCGG
TGAGGAATCGATCGGCCGAGCAGAAGCTTCTGATCTTCTGTCTTACGTCG
TCGACGTCTCCGTCACCATGGGTTCACTCTTGCAAGCTTCCTGCTTCCTG
AGTGCTGCCGACGATGTAAAGAGTGGCGACGACGGCGACGGTAGCAGCCA
GCAGCGGGTTTCCAGTGGCGTGGCGACGTTAGCGCCACGCCTACAGGGGA
CGGATGGGGAGGTGTCCCCGGAGGGTCTCGCGGCCGCGCTGGCGTTGACC
TTCGAAGCGACTCTGCCGGCCCTGCAAGGGCTGCTGCTCCTGCGGACGAA
GAGCGATCAGGTCGGCGCGATGTCTTCCTGTTCACCGATGATGGGCTGTA
ACGTACACGTGCATGTTTTTATATCCACACGGTCGCGCATTGGTCTGGCC
GCTCGCAACCTTCTGCATTTTTCTCCAAAAACAGGATCCGCGTTTGACCG
CCGGCAGCATCAGAAGCAAAATTTCATGGCATGGTCGCGTGTTTGTTTAA
CGTTTGGCGGCTTTGGGCGTCAACCCGCCCGTCTGTCCGACCTTCTTTAG
TTACTTGGTTAGTGTATACTAGAGAGCTGTAGCGCTGAAATGGGTCAAAT
GACTAGGCCGCATTCGATTATCTAGATAGAGGTAGAGATAGAGAGCACGT
CGTTGCACCTTGGGCAAAGACAGAATTATTTATTATTATACTTCGTATGT
ATATATGTAGATGTATATATTTATTTTAAAAAACGCTTACAGTAGAGCCT
ATGGGTAGCTAGACTAATTATTTATTCCTTCATTTATTTGTTTTCGTAGA
TATTTCGAGGAGTAACAAAAAAAAATGGTATGACTTGATGTAGAAGTGTA
AAGGATGGAAGCGTTTTACATGTGTTATTAGTAGCGTATATCGTATGGCG
TATAGCGTATGACGCATCGTATACTAATAATAGTGTAGTATGTAATTATG
TCGGGGTTTCGCCGGCCAGGCTGCGTTTGCGATGCCGAACCGGATGTTTT
GCGGGGTTGATTGGACACGTCGGGGAACAAAATTCTCTGCATGGCCAGCA
GGCATGACGTCATCAGTCCGAGTACCGCAAACATACGTTGATCTCCGCCC
GAGCGCACAAGCACCTAATGCACGCACGCACACCACATGCACAACGGTAT
GTGTGTGGTAATACACTCGGACGATAATATTCCTTGACAGAAATTTACCA
TCTCAGCGAAGAGGTTGGCTTGCTCACCAACTCGGCCACTCGGCAACTCC
GGCGACGATGCAAACTTAAATATATAGTATATATGTACATATACATATAG
CTGTATTGTGTTGTATGTAGCCTATGCCAGAACGTTATAGCCTCTCTTTT
CTCTTTCTCTCTCTTTTTTTTGCGGTGAATGGGCTCACGGTTTGCGGTCG
TGGTACCGACGCGTACCGAGACAGTCGCTTGTCAAAAAGAACAAAATCGC
GCTCCACCGTTTCGCTTCGCTGTCTAGCCGTCGTGTCGAGAGCAACGGCT
CAATGCGAGAGGTGAGGAAGAGGGCGGGGGACGGGGGGACGGGAAGCCCT
CGGCGGAGGCTCCGCGCCATCTCGTCAGCCTCGATACCTTAAACAAGTGA
AAGCCCGGTCCGGTTACGCACTCCCCGAATGGGACACGGCGGCGCACGCT
CTCTGGCTGGAAGCTGTGGTCTGATCCTTCCTCTTCTATTTTTCTTGTTA
TGTACTGTCCGAAGTGTGATAGTCGTAGCTTGCGCGCATCTCTCGAAAAT
AACCCCCCACTTTTTCCTGCTCCCTTTGATCACAACGCCTCCTCGACCTG
CATGATTTGGAACTCCCCTGCCTCCACAGACCCCCGCCGCGACCGAGTCC
GAAGCAGCGATGGAAAACAGGAGACGCCTGTCGATAGCGAGGCAGTGGCT
TTTGCGGTGCCTCCACGGCCTGCTCGGACCCGTTTTCCTGCACCCTCTGG
GTTTACAGGAGGCGTCGGCAACGGCAGAGGGTAGGGGGGGAGGGGTCGGC
TCAACGGCGAGATCCGAGGCGGCGGGTGAGTAA
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Coding sequence (CDS) from alignment at H-elongata_contig82387:244..2326-

>mRNA_H-elongata_contig82387.15892.1 ID=mRNA_H-elongata_contig82387.15892.1|Name=mRNA_H-elongata_contig82387.15892.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1110bp|location=Sequence derived from alignment at H-elongata_contig82387:244..2326- (Himanthalia elongata Himel1 dioecious)
GCCTCTGTACGCGCGCGCGCACAGGTTGCTGGCGCGGGCGAGGGCGTCGG
TGAGGAATCGATCGGCCGAGCAGAAGCTTCTGATCTTCTGTCTTACGTCG
TCGACGTCTCCGTCACCATGGGTTCACTCTTGCAAGCTTCCTGCTTCCTG
AGTGCTGCCGACGATGTAAAGAGTGGCGACGACGGCGACGGTAGCAGCCA
GCAGCGGGTTTCCAGTGGCGTGGCGACGTTAGCGCCACGCCTACAGGGGA
CGGATGGGGAGGTGTCCCCGGAGGGTCTCGCGGCCGCGCTGGCGTTGACC
TTCGAAGCGACTCTGCCGGCCCTGCAAGGGCTGCTGCTCCTGCGGACGAA
GAGCGATCAGGTCGGCGCGATGTCTTCCTGCCTCTGTACGCGCGCGCGCA
CAGGTTGCTGGCGCGGGCGAGGGCGTCGGTGAGGAATCGATCGGCCGAGC
AGAAGCTTCTGATCTTCTGTCTTACGTCGTCGACGTCTCCGTCACCATGG
GTTCACTCTTGCAAGCTTCCTGCTTCCTGAGTGCTGCCGACGATGTAAAG
AGTGGCGACGACGGCGACGGTAGCAGCCAGCAGCGGGTTTCCAGTGGCGT
GGCGACGTTAGCGCCACGCCTACAGGGGACGGATGGGGAGGTGTCCCCGG
AGGGTCTCGCGGCCGCGCTGGCGTTGACCTTCGAAGCGACTCTGCCGGCC
CTGCAAGGGCTGCTGCTCCTGCGGACGAAGAGCGATCAGGTCGGCGCGAT
GTCTTCCTCGATGGAAAACAGGAGACGCCTGTCGATAGCGAGGCAGTGGC
TTTTGCGGTGCCTCCACGGCCTGCTCGGACCCGTTTTCCTGCACCCTCTG
GGTTTACAGGAGGCGTCGGCAACGGCAGAGGGTAGGGGGGGAGGGGTCGG
CTCAACGGCGAGATCCGAGGCGGCGGGTGAGTAACGATGGAAAACAGGAG
ACGCCTGTCGATAGCGAGGCAGTGGCTTTTGCGGTGCCTCCACGGCCTGC
TCGGACCCGTTTTCCTGCACCCTCTGGGTTTACAGGAGGCGTCGGCAACG
GCAGAGGGTAGGGGGGGAGGGGTCGGCTCAACGGCGAGATCCGAGGCGGC
GGGTGAGTAA
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